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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Davies, D.R."

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Search Summary

This query matches 108 Structures.

Refinements

Structure Determination Methodology

experimental (108)

Scientific Name of Source Organism

	Homo sapiens (59)
	Mus musculus (9)
	Salmonella enterica subsp. enterica serovar Typhimurium (9)
	Gallus gallus (8)
	Human immunodeficiency virus 1 (6)
	Rhizopus microsporus var. chinensis (5)
	Escherichia coli (3)
	Geobacillus kaustophilus (3)
	Hepacivirus hominis (2)
	Bos taurus (1)

More...

Taxonomy

	Eukaryota (77)
	Bacteria (18)
	Riboviria (8)
	Eukaryota (eukaryotes) (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (108)

Polymer Entity Type

	Protein (107)
	DNA (17)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (36)
	2.0 - 2.5 (46)
	2.5 - 3.0 (17)
	3.0 - 3.5 (4)

Release Date

	1980 - 1984 (1)
	1985 - 1989 (5)
	1990 - 1994 (6)
	1995 - 1999 (20)
	2000 - 2004 (18)
	2005 - 2009 (32)
	2010 - 2014 (11)
	2015 - 2019 (11)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (51)
	Lyases (9)
	Transferases (15)
	Oxidoreductases (5)
	Isomerases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (71)
	Cyclic (30)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (49)
	Alpha and beta proteins (a/b) (30)
	All beta proteins (40)
	All alpha proteins (28)
	Artifacts (6)
	Small proteins (1)

AllSelected

1 to 25 of 108 Structures

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1A30 \| pdb_00001a30	Download File View File

HIV-1 PROTEASE COMPLEXED WITH A TRIPEPTIDE INHIBITOR

Louis, J.M., Dyda, F., Nashed, N.T., Kimmel, A.R., Davies, D.R.

(1998) Biochemistry 37: 2105-2110

Released	1998-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein) TRIPEPTIDE GLU-ASP-LEU (protein)

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1A5A \| pdb_00001a5a	Download File View File

CRYO-CRYSTALLOGRAPHY OF A TRUE SUBSTRATE, INDOLE-3-GLYCEROL PHOSPHATE, BOUND TO A MUTANT (ALPHAD60N) TRYPTOPHAN SYNTHASE ALPHA2BETA2 COMPLEX REVEALS THE CORRECT ORIENTATION OF ACTIVE SITE ALPHA GLU 49

Rhee, S., Miles, E.W., Davies, D.R.

(1998) J Biological Chem 273: 8553-8555

Released	1998-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (ALPHA CHAIN) (protein) TRYPTOPHAN SYNTHASE (BETA CHAIN) (protein)
Unique Ligands	K, PLP

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1A5B \| pdb_00001a5b	Download File View File

CRYO-CRYSTALLOGRAPHY OF A TRUE SUBSTRATE, INDOLE-3-GLYCEROL PHOSPHATE, BOUND TO A MUTANT (ALPHA D60N) TRYPTOPHAN SYNTHASE ALPHA2BETA2 COMPLEX REVEALS THE CORRECT ORIENTATION OF ACTIVE SITE ALPHA GLU 49

Rhee, S., Miles, E.W., Davies, D.R.

(1998) J Biological Chem 273: 8553-8555

Released	1998-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (ALPHA CHAIN) (protein) TRYPTOPHAN SYNTHASE (BETA CHAIN) (protein)
Unique Ligands	IGP, K, PLP

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1AER \| pdb_00001aer	Download File View File

DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED WITH BETA-TAD

Li, M., Dyda, F., Benhar, I., Pastan, I., Davies, D.R.

(1996) Proc Natl Acad Sci U S A 93: 6902-6906

Released	1996-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	EXOTOXIN A (protein)
Unique Ligands	AMP, TAD, TIA

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1B7E \| pdb_00001b7e	Download File View File

TRANSPOSASE INHIBITOR

Davies, D.R., Braam, L.M., Reznikoff, W.S., Rayment, I.

(1999) J Biological Chem 274: 11904-11913

Released	1999-04-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (TRANSPOSASE INHIBITOR PROTEIN FROM TN5) (protein)
Unique Ligands	TPT

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1BEU \| pdb_00001beu	Download File View File

TRP SYNTHASE (D60N-IPP-SER) WITH K+

Rhee, S., Mozzarelli, A., Miles, E.W., Davies, D.R.

(1998) Biochemistry 37: 10653-10659

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	TRYPTOPHAN SYNTHASE (protein)
Unique Ligands	IPL, K, PLS

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1BIS \| pdb_00001bis	Download File View File

HIV-1 INTEGRASE CORE DOMAIN

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)

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1BIU \| pdb_00001biu	Download File View File

HIV-1 INTEGRASE CORE DOMAIN COMPLEXED WITH MG++

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	MG

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1BIZ \| pdb_00001biz	Download File View File

HIV-1 INTEGRASE CORE DOMAIN

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	CAC

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1BQL \| pdb_00001bql	Download File View File

STRUCTURE OF AN ANTI-HEL FAB FRAGMENT COMPLEXED WITH BOBWHITE QUAIL LYSOZYME

Chacko, S., Davies, D.R.

(1996) Proteins 26: 55-65

Released	1995-04-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Colinus virginianus Mus musculus
Macromolecule	BOBWHITE QUAIL LYSOZYME (protein) HYHEL-5 FAB (HEAVY CHAIN) (protein) HYHEL-5 FAB (LIGHT CHAIN) (protein)

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1CI4 \| pdb_00001ci4	Download File View File

THE CRYSTAL STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)

Umland, T.C., Wei, S.-Q., Craigie, R., Davies, D.R.

(2000) Biochemistry 39: 9130-9138

Released	2000-08-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)) (protein)

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1D3R \| pdb_00001d3r	Download File View File

CRYSTAL STRUCTURE OF TRIPLEX DNA

Rhee, S., Han, Z.-J., Liu, K., Todd Miles, H.T., Davies, D.R.

(1999) Biochemistry 38: 16810-16815

Released	2000-01-01
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D(CP(BRU)PCPCP(BRU)PCPCPGPCPGPCPG)-3') (nucleic acid) DNA (5'-D(CPGPCPGPCPGPGPAP*G)-3') (nucleic acid)

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1DHS \| pdb_00001dhs	Download File View File

CRYSTAL STRUCTURE OF THE NAD COMPLEX OF HUMAN DEOXYHYPUSINE SYNTHASE

Liao, D.-I., Davies, D.R.

(1998) Structure 6: 23-32

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEOXYHYPUSINE SYNTHASE (protein)
Unique Ligands	NAD

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1HQO \| pdb_00001hqo	Download File View File

CRYSTAL STRUCTURE OF THE NITROGEN REGULATION FRAGMENT OF THE YEAST PRION PROTEIN URE2P

Umland, T.C., Taylor, K.L., Rhee, S., Wickner, R.B., Davies, D.R.

(2001) Proc Natl Acad Sci U S A 98: 1459-1464

Released	2001-02-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	URE2 PROTEIN (protein)

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1ITG \| pdb_00001itg	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HIV-1 INTEGRASE: SIMILARITY TO OTHER POLYNUCLEOTIDYL TRANSFERASES

Dyda, F., Hickman, A.B., Jenkins, T.M., Engelman, A., Craigie, R., Davies, D.R.

(1994) Science 266: 1981-1986

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	CAC

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1JY1 \| pdb_00001jy1	Download File View File

CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE (TDP1)

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.

(2002) Structure 10: 237-248

Released	2002-02-20
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	TYROSYL-DNA PHOSPHODIESTERASE (protein)

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1MCP \| pdb_00001mcp	Download File View File

PHOSPHOCHOLINE BINDING IMMUNOGLOBULIN FAB MC/PC603. AN X-RAY DIFFRACTION STUDY AT 2.7 ANGSTROMS

Satow, Y., Cohen, G.H., Padlan, E.A., Davies, D.R.

(1986) J Mol Biology 190: 593-604

Released	1985-01-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	IGA-KAPPA MCPC603 FAB (HEAVY CHAIN) (protein) IGA-KAPPA MCPC603 FAB (LIGHT CHAIN) (protein)
Unique Ligands	SO4

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1MU7 \| pdb_00001mu7	Download File View File

Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Tungstate Complex

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.

(2003) J Mol Biology 324: 917-932

Released	2003-01-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA Phosphodiesterase (protein)
Unique Ligands	GOL, WO4

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1MU9 \| pdb_00001mu9	Download File View File

Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Vanadate Complex

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.

(2002) J Mol Biology 324: 917-932

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA Phosphodiesterase (protein)
Unique Ligands	GOL, VO4

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1MUH \| pdb_00001muh	Download File View File

CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNA

Thoden, J.B., Holden, H.M., Davies, D.R., Goryshin, I.Y., Reznikoff, W.S., Rayment, I.

(2000) Science 289: 77-85

Released	2002-09-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Tn5 transposase (protein) DNA NON-TRANSFERRED STRAND (nucleic acid) DNA TRANSFERRED STRAND (nucleic acid)
Unique Ligands	MG, MN

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1NOP \| pdb_00001nop	Download File View File

Crystal structure of human tyrosyl-DNA phosphodiesterase (Tdp1) in complex with vanadate, DNA and a human topoisomerase I-derived peptide

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.

(2003) Chem Biol 10: 139-147

Released	2003-03-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	topoisomerase I-derived peptide (protein) tyrosyl-DNA phosphodiesterase 1 (protein) 5'-D(APGPAPGPTPT)-3' (nucleic acid)
Unique Ligands	VO4

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1QS4 \| pdb_00001qs4	Download File View File

Core domain of HIV-1 integrase complexed with Mg++ and 1-(5-chloroindol-3-yl)-3-hydroxy-3-(2H-tetrazol-5-yl)-propenone

Goldgur, Y., Craigie, R., Fujiwara, T., Yoshinaga, T., Davies, D.R.

(1999) Proc Natl Acad Sci U S A 96: 13040-13043

Released	1999-11-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49)) (protein)
Unique Ligands	100, MG

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1RFF \| pdb_00001rff	Download File View File

Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octapeptide KLNYYDPR, and tetranucleotide AGTT.

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.

(2004) J Med Chem 47: 829-837

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Topoisomerase I-Derived Peptide (protein) Tyrosyl-DNA phosphodiesterase 1 (protein) 5'-D(APGPTPT)-3' (nucleic acid)
Unique Ligands	SPM, VO4

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1RFI \| pdb_00001rfi	Download File View File

Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, pentapeptide KLNYK, and tetranucleotide AGTC

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.

(2004) J Med Chem 47: 829-837

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Topoisomerase I-Derived Peptide (protein) Tyrosyl-DNA phosphodiesterase 1 (protein) 5'-D(APGPTPC)-3' (nucleic acid)
Unique Ligands	SPM, VO4

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1RG1 \| pdb_00001rg1	Download File View File

Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTT

Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.

(2004) J Med Chem 47: 829-837

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tyrosyl-DNA phosphodiesterase 1 (protein) 5'-D(APGPTPT)-3' (nucleic acid)
Unique Ligands	OTS, SPM, VO4

1 to 25 of 108 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A30 | pdb_00001a30

1A5A | pdb_00001a5a

1A5B | pdb_00001a5b

1AER | pdb_00001aer

1B7E | pdb_00001b7e

1BEU | pdb_00001beu

1BIS | pdb_00001bis

1BIU | pdb_00001biu

1BIZ | pdb_00001biz

1BQL | pdb_00001bql

1CI4 | pdb_00001ci4

1D3R | pdb_00001d3r

1DHS | pdb_00001dhs

1HQO | pdb_00001hqo

1ITG | pdb_00001itg

1JY1 | pdb_00001jy1

1MCP | pdb_00001mcp

1MU7 | pdb_00001mu7

1MU9 | pdb_00001mu9

1MUH | pdb_00001muh

1NOP | pdb_00001nop

1QS4 | pdb_00001qs4

1RFF | pdb_00001rff

1RFI | pdb_00001rfi

1RG1 | pdb_00001rg1