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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dent, K.C."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (4)
	Cowpea mosaic virus (2)
	Bunyamwera virus (1)
	Emesvirus zinderi (1)
	Escherichia coli BL21(DE3) (1)
	Schmallenberg virus (1)
	Suid alphaherpesvirus 1 (1)

Taxonomy

	Riboviria (5)
	Eukaryota (4)
	Bacteria (1)
	Duplodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (8)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (10)
	RNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (4)
	> 4.5 (2)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (4)
	Cyclic (3)
	Icosahedral (3)

SCOP Classification

All beta proteins (1)

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1 to 10 of 10 Structures

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3ZL9 \| pdb_00003zl9	Download File View File

Crystal structure of the nucleocapsid protein from Schmallenberg virus

Ariza, A., Tanner, S.J., Walter, C.T., Dent, K.C., Shepherd, D.A., Wu, W., Matthews, S.V., Hiscox, J.A., Green, T.J., Luo, M., Elliot, R.M., Ashcroft, A.E., Stonehouse, N.J., Ranson, N.A., Barr, J.N., Edwards, T.A.

(2013) Nucleic Acids Res 41: 5912

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Schmallenberg virus
Macromolecule	NUCLEOCAPSID PROTEIN (protein)

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3ZLA \| pdb_00003zla	Download File View File

Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNA

(2013) Nucleic Acids Res 41: 5912

Released	2013-05-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bunyamwera virus Escherichia coli BL21(DE3)
Macromolecule	NUCLEOPROTEIN (protein) RNA (nucleic acid)

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4BP7 \| pdb_00004bp7	Download File View File

Asymmetric structure of a virus-receptor complex

Dent, K.C., Thompson, R., Barker, A.M., Barr, J.N., Hiscox, J.A., Stockley, P.G., Ranson, N.A.

(2013) Structure 21: 1225-1234

Released	2013-07-17
Method	ELECTRON MICROSCOPY 39 Å
Organisms	Emesvirus zinderi
Macromolecule	COAT PROTEIN (protein)

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5A32 \| pdb_00005a32	Download File View File

Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)

Hesketh, E.L., Meshcheriakova, Y., Dent, K.C., Saxena, P., Thompson, R., Cockburn, J.J., Lomonossoff, G.P., Ranson, N.A.

(2015) Nat Commun 6: 10113-10113

Released	2015-12-23
Method	ELECTRON MICROSCOPY 3.44 Å
Organisms	Cowpea mosaic virus
Macromolecule	RNA2 POLYPROTEIN (protein)

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5A33 \| pdb_00005a33	Download File View File

Electron cryo-microscopy of Cowpea Mosaic Virus (CPMV) empty virus like particle (eVLP)

Hesketh, E.L., Meshcheriakova, Y., Dent, K.C., Saxena, P., Thompson, R., Cockburn, J.J., Lomonossoff, G.P., Ranson, N.A.

(2015) Nat Commun 6: 10113-10113

Released	2015-12-23
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Cowpea mosaic virus
Macromolecule	RNA2 POLYPROTEIN (protein)

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5FKI \| pdb_00005fki	Download File View File

Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data

Hagen, C., Dent, K.C., Zeev Ben Mordehai, T., Vasishtan, D., Antonin, W., Mettenleiter, T.C., Gruenewald, K.

(2015) Cell Rep 13: 2645-2652

Released	2016-03-16
Method	ELECTRON MICROSCOPY 35 Å
Organisms	Suid alphaherpesvirus 1
Macromolecule	UL31 (protein) UL34 protein (protein)
Unique Ligands	CL, ZN

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7QH6 \| pdb_00007qh6	Download File View File

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1

Rebelo-Guiomar, P., Pellegrino, S., Dent, K.C., Warren, A.J., Minczuk, M.

(2022) Nat Commun 13: 929-929

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.08 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 44 Unique nucleic acid chains: 2
Unique Ligands	ZN

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7QH7 \| pdb_00007qh7	Download File View File

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

Rebelo-Guiomar, P., Pellegrino, S., Dent, K.C., Warren, A.J., Minczuk, M.

(2022) Nat Commun 13: 929-929

Released	2022-05-18
Method	ELECTRON MICROSCOPY 2.89 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 47 Unique nucleic acid chains: 2
Unique Ligands	MG, ZN

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7R4X \| pdb_00007r4x	Download File View File

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Pellegrino, S., Dent, K.C., Spikes, T., Warren, A.J.

(2023) Nucleic Acids Res 51: 4043-4054

Released	2023-02-22
Method	ELECTRON MICROSCOPY 2.15 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 34 Unique nucleic acid chains: 1
Unique Ligands	K, MG, ZN

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8A3D \| pdb_00008a3d	Download File View File

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Faille, A., Warren, A.J., Dent, K.C.

(2023) bioRxiv

Released	2023-03-08
Method	ELECTRON MICROSCOPY 1.67 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 42 Unique nucleic acid chains: 3
Unique Ligands	EPE, HMT, K, MG, NA, SPM, ZN

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3ZL9 | pdb_00003zl9

Crystal structure of the nucleocapsid protein from Schmallenberg virus

3ZLA | pdb_00003zla

Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNA

4BP7 | pdb_00004bp7

Asymmetric structure of a virus-receptor complex

5A32 | pdb_00005a32

Electron cryo-microscopy of Cowpea Mosaic Virus containing RNA-1 (CPMVb)

5A33 | pdb_00005a33

Electron cryo-microscopy of Cowpea Mosaic Virus (CPMV) empty virus like particle (eVLP)

5FKI | pdb_00005fki

Pseudorabies virus (PrV) nuclear egress complex proteins fitted as a hexameric lattice into a sub-tomogram average derived from focused- ion beam milled lamellae electron cryo-microscopic data

7QH6 | pdb_00007qh6

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1

7QH7 | pdb_00007qh7

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

7R4X | pdb_00007r4x

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

8A3D | pdb_00008a3d

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3ZL9 | pdb_00003zl9

3ZLA | pdb_00003zla

4BP7 | pdb_00004bp7

5A32 | pdb_00005a32

5A33 | pdb_00005a33

5FKI | pdb_00005fki

7QH6 | pdb_00007qh6

7QH7 | pdb_00007qh7

7R4X | pdb_00007r4x

8A3D | pdb_00008a3d