RCSB PDB: Search

1UF9 \| pdb_00001uf9	Download File View File

Crystal structure of TT1252 from Thermus thermophilus

Seto, A., Murayama, K., Toyama, M., Ebihara, A., Nakagawa, N., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Proteins 58: 235-242

Released	2003-11-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus
Macromolecule	TT1252 protein (protein)
Unique Ligands	ATP, PO4

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1VDH \| pdb_00001vdh	Download File View File

Structure-based functional identification of a novel heme-binding protein from thermus thermophilus HB8

Ebihara, A., Okamoto, A., Kousumi, Y., Yamamoto, H., Masui, R., Ueyama, N., Shibata, T., Inoue, Y., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Struct Funct Genomics 6: 21-32

Released	2004-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	muconolactone isomerase-like protein (protein)

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1VGG \| pdb_00001vgg	Download File View File

Crystal Structure of the Conserved Hypothetical Protein TTHA1091 from Thermus Thermophilus HB8

Satoh, S., Yao, M., Kousumi, Y., Ebihara, A., Matsumoto, K., Okamoto, A., Tanaka, I., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Conserved Hypothetical Protein TT1634 (TTHA1091) (protein)

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1WJ9 \| pdb_00001wj9	Download File View File

Crystal structure of a CRISPR-associated protein from thermus thermophilus

Ebihara, A., Yao, M., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) Protein Sci 15: 1494-1499

Released	2004-11-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	CRISPR-associated protein (protein)

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1WXW \| pdb_00001wxw	Download File View File

Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8

Pioszak, A.A., Murayama, K., Nakagawa, N., Ebihara, A., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr Sect F Struct Biol Cryst Commun 61: 867-874

Released	2005-08-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Thermus thermophilus HB8
Macromolecule	hypothetical protein TTHA1280 (protein)
Unique Ligands	HEZ

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1WXX \| pdb_00001wxx	Download File View File

Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8

Pioszak, A.A., Murayama, K., Nakagawa, N., Ebihara, A., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr Sect F Struct Biol Cryst Commun 61: 867-874

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	hypothetical protein TTHA1280 (protein)
Unique Ligands	K, PO4

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2A4K \| pdb_00002a4k	Download File View File

3-Oxoacyl-[acyl carrier protein] reductase from Thermus thermophilus TT0137

Zhou, W., Ebihara, A., Tempel, W., Yokoyama, S., Chen, L., Kuramitsu, S., Nguyen, J., Chang, S.-H., Liu, Z.-J., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-10
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Thermus thermophilus
Macromolecule	3-oxoacyl-[acyl carrier protein] reductase (protein)
Unique Ligands	UNX

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2CB1 \| pdb_00002cb1	Download File View File

Crystal Structure of O-actetyl Homoserine Sulfhydrylase From Thermus Thermophilus HB8,OAH2.

Imagawa, T., Utsunomiya, H., Tsuge, H., Ebihara, A., Kanagawa, M., Nakagawa, N., Kuroishi, C., Agari, Y., Kuramitsu, S., Yokoyama, S.

To be published

Released	2007-01-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	O-ACETYL HOMOSERINE SULFHYDRYLASE (protein)
Unique Ligands	PLP

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2CTZ \| pdb_00002ctz	Download File View File

Crystal structure of o-acetyl homoserine sulfhydrylase from Thermus thermophilus HB8

Imagawa, T., Kousumi, Y., Tsuge, H., Utsunomiya, H., Ebihara, A., Nakagawa, N., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-11-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus
Macromolecule	O-acetyl-L-homoserine sulfhydrylase (protein)
Unique Ligands	PLP

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2CU3 \| pdb_00002cu3	Download File View File

Crystal structure of TT1568 from Thermus thermophilus HB8

Sugahara, M., Satoh, S., Ebihara, A., Kuramitsu, S., Yokoyama, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermus thermophilus HB8
Macromolecule	unknown function protein (protein)
Unique Ligands	CD

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2CVB \| pdb_00002cvb	Download File View File

Crystal structure of a thioredoxin-like protein from Thermus thermophilus HB8

Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	probable thiol-disulfide isomerase/thioredoxin (protein)

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2CW5 \| pdb_00002cw5	Download File View File

Crystal structure of a conserved hypothetical protein from Thermus thermophilus HB8

Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Thermus thermophilus
Macromolecule	Bacterial fluorinating enzyme homolog (protein)

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2CWC \| pdb_00002cwc	Download File View File

Crystal structure of ADP-ribosylglycohydrolase-related protein from Thermus thermophilus HB8

Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ADP-ribosylglycohydrolase (protein)

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2CWL \| pdb_00002cwl	Download File View File

Crystal structure of manganese-free form of pseudocatalase from Thermus thermophilus HB8

Ebihara, A., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermus thermophilus HB8
Macromolecule	manganese-free pseudocatalase (protein)

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2CWW \| pdb_00002cww	Download File View File

Crystal structure of Thermus thermophilus TTHA1280, a putative SAM-dependent RNA methyltransferase, in complex with S-adenosyl-L-homocysteine

Pioszak, A.A., Murayama, K., Nakagawa, N., Ebihara, A., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Acta Crystallogr Sect F Struct Biol Cryst Commun 61: 867-874

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	putative SAM-dependent RNA methyltransferase (protein)
Unique Ligands	ACY, GOL, SAH

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2CX5 \| pdb_00002cx5	Download File View File

Crystal structure of a putative trans-editing enzyme for prolyl tRNA synthetase

Murayama, K., Nakagawa, N., Ebihara, A., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-12-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	A PUTATIVE TRANS-EDITING ENZYME (protein)

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2DC0 \| pdb_00002dc0	Download File View File

Crystal structure of amidase

Ohshima, T., Sakuraba, H., Ebihara, A., Kanagawa, M., Nakagawa, N., Kuroishi, C., Satoh, S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-01-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	probable amidase (protein)

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2DQB \| pdb_00002dqb	Download File View File

Crystal structure of dNTP triphosphohydrolase from Thermus thermophilus HB8, which is homologous to dGTP triphosphohydrolase

Kondo, N., Nakagawa, N., Ebihara, A., Chen, L., Liu, Z.-J., Wang, B.-C., Yokoyama, S., Kuramitsu, S., Masui, R., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr D Biol Crystallogr 63: 230-239

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Deoxyguanosinetriphosphate triphosphohydrolase, putative (protein)
Unique Ligands	MG

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2DUY \| pdb_00002duy	Download File View File

Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8

Niwa, H., Shimada, A., Chen, L., Liu, Z.-J., Wang, B.-C., Ebihara, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Competence protein ComEA-related protein (protein)
Unique Ligands	CL

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2E6K \| pdb_00002e6k	Download File View File

X-ray structure of Thermus thermopilus HB8 TT0505

Yoshida, H., Kamitori, S., Agari, Y., Iino, H., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Transketolase (protein)

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2EBY \| pdb_00002eby	Download File View File

Crystal structure of a hypothetical protein from E. Coli

Karthe, P., Kumarevel, T.S., Ebihara, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	Putative HTH-type transcriptional regulator ybaQ (protein)
Unique Ligands	SO4

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2ECR \| pdb_00002ecr	Download File View File

Crystal structure of the ligand-free form of the flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase

Kim, S.H., Hisano, T., Iwasaki, W., Ebihara, A., Miki, K.

(2008) Proteins 70: 718-730

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase (protein)

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2ECU \| pdb_00002ecu	Download File View File

Crystal structure of flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase

Kim, S.H., Hisano, T., Iwasaki, W., Ebihara, A., Miki, K.

(2008) Proteins 70: 718-730

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	flavin reductase (HpaC) of 4-hydroxyphenylacetate 3-monooxygnease (protein)
Unique Ligands	12P, 1PG

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2ED4 \| pdb_00002ed4	Download File View File

Crystal structure of flavin reductase HpaC complexed with FAD and NAD

Kim, S.H., Hisano, T., Iwasaki, W., Ebihara, A., Miki, K.

(2008) Proteins 70: 718-730

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermus thermophilus HB8
Macromolecule	flavin reductase (HpaC) of 4-hydroxyphenylacetate 3-monooxygenae (protein)
Unique Ligands	FAD, NAD

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2EG3 \| pdb_00002eg3	Download File View File

Crystal Structure of Probable Thiosulfate Sulfurtransferase

Sakai, H., Ebihara, A., Kitamura, Y., Shinkai, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Probable thiosulfate sulfurtransferase (protein)
Unique Ligands	SO4, ZN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1UF9 | pdb_00001uf9

1VDH | pdb_00001vdh

1VGG | pdb_00001vgg

1WJ9 | pdb_00001wj9

1WXW | pdb_00001wxw

1WXX | pdb_00001wxx

2A4K | pdb_00002a4k

2CB1 | pdb_00002cb1

2CTZ | pdb_00002ctz

2CU3 | pdb_00002cu3

2CVB | pdb_00002cvb

2CW5 | pdb_00002cw5

2CWC | pdb_00002cwc

2CWL | pdb_00002cwl

2CWW | pdb_00002cww

2CX5 | pdb_00002cx5

2DC0 | pdb_00002dc0

2DQB | pdb_00002dqb

2DUY | pdb_00002duy

2E6K | pdb_00002e6k

2EBY | pdb_00002eby

2ECR | pdb_00002ecr

2ECU | pdb_00002ecu

2ED4 | pdb_00002ed4

2EG3 | pdb_00002eg3