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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fontana, P."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (6)
	Drosophila melanogaster (2)
	Saccharomyces cerevisiae (1)
	Xenopus laevis (1)

Taxonomy

Eukaryota (9)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

	Protein (9)
	RNA (2)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (4)
	> 4.5 (1)

Release Date

2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (2)

Symmetry Type

	Asymmetric (6)
	Helical (2)
	Cyclic (1)

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1 to 9 of 9 Structures

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6X6A \| pdb_00006x6a	Download File View File

Cryo-EM structure of NLRP1-DPP9 complex

Hollingsworth, L.R., Sharif, H., Griswold, A.R., Fontana, P., Mintseris, J., Dagbay, K.B., Paulo, J.A., Gygi, S.P., Bachovchin, D.A., Wu, H.

(2021) Nature 592: 778-783

Released	2021-03-10
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 9 (protein) NACHT, LRR and PYD domains-containing protein 1 (protein)

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6X6C \| pdb_00006x6c	Download File View File

Cryo-EM structure of NLRP1-DPP9-VbP complex

Hollingsworth, L.R., Sharif, H., Griswold, A.R., Fontana, P., Mintseris, J., Dagbay, K.B., Paulo, J.A., Gygi, S.P., Bachovchin, D.A., Wu, H.

(2021) Nature 592: 778-783

Released	2021-03-10
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 9 (protein) NACHT, LRR and PYD domains-containing protein 1 (protein)
Unique Ligands	GK2

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6XKJ \| pdb_00006xkj	Download File View File

Cryo-EM structure of CARD8-CARD filament

Hollingsworth, L.R., David, L., Li, Y., Sharif, H., Fontana, P., Fu, T., Wu, H.

(2021) Nat Commun 12: 189-189

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Homo sapiens
Macromolecule	Caspase recruitment domain-containing protein 8 (protein)

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6XKK \| pdb_00006xkk	Download File View File

Cryo-EM structure of the NLRP1-CARD filament

Hollingsworth, L.R., David, L., Li, Y., Sharif, H., Fontana, P., Fu, T., Wu, H.

(2021) Nat Commun 12: 189-189

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.72 Å
Organisms	Homo sapiens
Macromolecule	NACHT, LRR and PYD domains-containing protein 1 (protein)

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7TDZ \| pdb_00007tdz	Download File View File

Cryo-EM model of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis

Fontana, P., Wu, H.

(2022) Science 376: eabm9326-eabm9326

Released	2022-06-22
Method	ELECTRON MICROSCOPY 6.9 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 15

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8ADJ \| pdb_00008adj	Download File View File

Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster in complex with PARG inhibitor PDD00017272

Ariza, A., Fontana, P.

(2023) Nat Commun 14: 3200-3200

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.508 Å
Organisms	Drosophila melanogaster
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	CL, GOL, LQX, SO4

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8ADK \| pdb_00008adk	Download File View File

Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster

Ariza, A., Fontana, P.

(2023) Nat Commun 14: 3200-3200

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.474 Å
Organisms	Drosophila melanogaster
Macromolecule	Poly(ADP-ribose) glycohydrolase (protein)
Unique Ligands	CL, GOL, SO4

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8CTH \| pdb_00008cth	Download File View File

Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex

Li, J., Wang, L., Fontana, P., Hunkeler, M., Roy-Burman, S.S., Wu, H., Fishcer, E.S., Gregory, R.I.

(2023) Nature 613: 391-397

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	tRNA (guanine-N(7)-)-methyltransferase (protein) tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 (protein) Phe-tRNA (nucleic acid)
Unique Ligands	SAH

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8CTI \| pdb_00008cti	Download File View File

Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex

Li, J., Wang, L., Fontana, P., Hunkeler, M., Roy-Burman, S.S., Wu, H., Fischer, E.S., Gregory, R.I.

(2023) Nature 613: 391-397

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	tRNA (guanine-N(7)-)-methyltransferase (protein) tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 (protein) tRNA-Val-TAC-2-1 (nucleic acid)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6X6A | pdb_00006x6a

Cryo-EM structure of NLRP1-DPP9 complex

6X6C | pdb_00006x6c

Cryo-EM structure of NLRP1-DPP9-VbP complex

6XKJ | pdb_00006xkj

Cryo-EM structure of CARD8-CARD filament

6XKK | pdb_00006xkk

Cryo-EM structure of the NLRP1-CARD filament

7TDZ | pdb_00007tdz

Cryo-EM model of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis

8ADJ | pdb_00008adj

Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster in complex with PARG inhibitor PDD00017272

8ADK | pdb_00008adk

Poly(ADP-ribose) glycohydrolase (PARG) from Drosophila melanogaster

8CTH | pdb_00008cth

Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex

8CTI | pdb_00008cti

Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6X6A | pdb_00006x6a

6X6C | pdb_00006x6c

6XKJ | pdb_00006xkj

6XKK | pdb_00006xkk

7TDZ | pdb_00007tdz

8ADJ | pdb_00008adj

8ADK | pdb_00008adk

8CTH | pdb_00008cth

8CTI | pdb_00008cti