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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Freund, S.M.V."

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Search Summary

This query matches 49 Structures.

Refinements

Structure Determination Methodology

experimental (49)

Scientific Name of Source Organism

	Homo sapiens (36)
	Bacillus amyloliquefaciens (3)
	Saccharomyces cerevisiae (3)
	Schizosaccharomyces pombe (2)
	Thermococcus celer (2)
	Drosophila melanogaster (1)
	Escherichia coli (1)
	Hepatitis B virus (1)
	Lama glama (1)
	Pediculus humanus corporis (1)

More...

Taxonomy

	Eukaryota (43)
	Bacteria (4)
	Archaea (2)
	Riboviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (34)
	SOLUTION NMR (15)

Polymer Entity Type

	Protein (49)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (17)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (4)
	2010 - 2014 (22)
	2015 - 2019 (15)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (44)
	Cyclic (5)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	Artifacts (5)
	All alpha proteins (5)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 49 Structures

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1AB7 \| pdb_00001ab7	Download File View File

NMR 15N RELAXATION AND STRUCTURAL STUDIES REVEAL CONFORMATIONAL EXCHANGE IN BARSTAR C40/82A, 30 STRUCTURES

Wong, K.B., Fersht, A.R., Freund, S.M.V.

(1997) J Mol Biology 268: 494-511

Released	1997-09-04
Method	SOLUTION NMR
Organisms	Bacillus amyloliquefaciens
Macromolecule	BARSTAR (protein)

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1BTA \| pdb_00001bta	Download File View File

THREE-DIMENSIONAL SOLUTION STRUCTURE AND 13C ASSIGNMENTS OF BARSTAR USING NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Lubienski, M.J., Bycroft, M., Freund, S.M.V., Fersht, A.R.

(1994) Biochemistry 33: 8866-8877

Released	1994-07-31
Method	SOLUTION NMR
Organisms	Bacillus amyloliquefaciens
Macromolecule	BARSTAR (protein)

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1BTB \| pdb_00001btb	Download File View File

THREE-DIMENSIONAL SOLUTION STRUCTURE AND 13C ASSIGNMENTS OF BARSTAR USING NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Lubienski, M.J., Bycroft, M., Freund, S.M.V., Fersht, A.R.

(1994) Biochemistry 33: 8866-8877

Released	1994-07-31
Method	SOLUTION NMR
Organisms	Bacillus amyloliquefaciens
Macromolecule	BARSTAR (protein)

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1GO0 \| pdb_00001go0	Download File View File

NMR Structure of Ribosomal Protein L30e from Thermococcus celer

Chan, S.-H., Bycroft, M., Freund, S.M.V., Wong, K.-B.

(2003) Protein Sci 12: 1483

Released	2003-06-12
Method	SOLUTION NMR
Organisms	Thermococcus celer
Macromolecule	50S RIBOSOMAL PROTEIN L30E (protein)

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1GO1 \| pdb_00001go1	Download File View File

NMR Structure of Ribosomal Protein L30e from Thermococcus celer.

Chan, S.-H., Bycroft, M., Freund, S.M.V., Wong, K.-B.

(2003) Protein Sci 12: 1483

Released	2003-06-12
Method	SOLUTION NMR
Organisms	Thermococcus celer
Macromolecule	50S RIBOSOMAL PROTEIN L30E (protein)

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1H1J \| pdb_00001h1j	Download File View File

The SAP domain is a DNA-Binding Domain Capable of Binding S/MAR DNA

Jacobsen, J.O.B., Freund, S.M.V., Bycroft, M.

To be published

Released	2002-08-08
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	THO1 PROTEIN (protein)

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1ZTR \| pdb_00001ztr	Download File View File

Solution structure of Engrailed homeodomain L16A mutant

Religa, T.L., Markson, J.S., Mayor, U., Freund, S.M.V., Fersht, A.R.

(2005) Nature 437: 1053-1056

Released	2005-10-18
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	Segmentation polarity homeobox protein engrailed (protein)

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2L9N \| pdb_00002l9n	Download File View File

Structure of the human Shwachman-Bodian-Diamond syndrome (SBDS) protein

Hilcenko, C., Freund, S.M.V., Warren, A.J.

(2011) Genes Dev 25: 917-929

Released	2011-05-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ribosome maturation protein SBDS (protein)

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2V0E \| pdb_00002v0e	Download File View File

BRK domain from human CHD7

Allen, M.D., Religa, T.L., Freund, S.M.V., Bycroft, M.

(2007) J Mol Biology 371: 1135

Released	2007-05-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7 (protein)

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2V0F \| pdb_00002v0f	Download File View File

BRK domain from human CHD7

Allen, M.D., Religa, T.L., Freund, S.M.V., Bycroft, M.

(2007) J Mol Biology 371: 1135

Released	2007-05-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7 (protein)

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2VYT \| pdb_00002vyt	Download File View File

The MBT repeats of human SCML2 bind to peptides containing mono methylated lysine.

Santiveri, C.M., Lechtenberg, B.C., Allen, M.D., Sathyamurthy, A., Jaulent, A.M., Freund, S.M.V., Bycroft, M.

(2008) J Mol Biology 382: 1107

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	SEX COMB ON MIDLEG-LIKE PROTEIN 2 (protein)
Unique Ligands	MLZ, PGE

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2X35 \| pdb_00002x35	Download File View File

Molecular basis of Histone H3K36me3 recognition by the PWWP domain of BRPF1.

Vezzoli, A., Bonadies, N., Allen, M.D., Freund, S.M.V., Santiveri, C.M., Kvinlaug, B., Huntly, B.J.P., Gottgens, B., Bycroft, M.

(2010) Nat Struct Mol Biol 17: 617

Released	2010-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PEREGRIN (protein)

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2X4W \| pdb_00002x4w	Download File View File

Molecular basis of Histone H3K36me3 recognition by the PWWP domain of BRPF1.

Vezzoli, A., Bonadies, N., Allen, M.D., Freund, S.M.V., Santiveri, C.M., Kvinlaug, B., Huntly, B.J.P., Gottgens, B., Bycroft, M.

(2010) Nat Struct Mol Biol 17: 617

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	HISTONE H3.2 (protein) PEREGRIN (protein)
Unique Ligands	FMT

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2X4X \| pdb_00002x4x	Download File View File

Molecular basis of Histone H3K36me3 recognition by the PWWP domain of BRPF1.

Vezzoli, A., Bonadies, N., Allen, M.D., Freund, S.M.V., Santiveri, C.M., Kvinlaug, B., Huntly, B.J.P., Gottgens, B., Bycroft, M.

(2010) Nat Struct Mol Biol 17: 617

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	HISTONE H3.2 (protein) PEREGRIN (protein)
Unique Ligands	SO4

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2X4Y \| pdb_00002x4y	Download File View File

Molecular basis of Histone H3K36me3 recognition by the PWWP domain of BRPF1.

Vezzoli, A., Bonadies, N., Allen, M.D., Freund, S.M.V., Santiveri, C.M., Kvinlaug, B., Huntly, B.J.P., Gottgens, B., Bycroft, M.

(2010) Nat Struct Mol Biol 17: 617

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	HISTONE H3.2 (protein) PEREGRIN (protein)
Unique Ligands	SO4

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2XEW \| pdb_00002xew	Download File View File

Crystal structure of K11-linked diubiquitin

Bremm, A., Freund, S.M.V., Komander, D.

(2010) Nat Struct Mol Biol 17: 939

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN (protein)
Unique Ligands	CL, EDO, FLC

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2Y9T \| pdb_00002y9t	Download File View File

Structural basis of p63a SAM domain mutants involved in AEC syndrome

Sathyamurthy, A., Freund, S.M.V., Johnson, C.M., Allen, M.D.

(2011) FEBS J 278: 2680

Released	2011-08-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TUMOR PROTEIN 63 (protein)

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2Y9U \| pdb_00002y9u	Download File View File

Structural basis of p63a SAM domain mutants involved in AEC syndrome

Sathyamurthy, A., Freund, S.M.V., Johnson, C.M., Allen, M.D.

(2011) FEBS J 278: 2680

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	TUMOR PROTEIN 63 (protein)
Unique Ligands	SO4

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2YMT \| pdb_00002ymt	Download File View File

gamma 2 adaptin EAR domain crystal structure with phage peptide GEEWGPWV

Juergens, M.C., Voros, J., Rautureau, G., Shepherd, D., Pye, V.E., Muldoon, J., Johnson, C.M., Ashcroft, A., Freund, S.M.V., Ferguson, N.

(2013) Nat Chem Biol 9: 540

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2 (protein) PHAGE DISPLAY DERIVED GAMMA 2 ADAPTIN EAR DOMAIN BINDING PEPTIDE (protein)
Unique Ligands	PDO

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3ZHF \| pdb_00003zhf	Download File View File

gamma 2 adaptin EAR domain crystal structure with preS1 site1 peptide NPDWDFN

Juergens, M.C., Voros, J., Rautureau, G., Shepherd, D., Pye, V.E., Muldoon, J., Johnson, C.M., Ashcroft, A., Freund, S.M.V., Ferguson, N.

(2013) Nat Chem Biol 9: 540

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hepatitis B virus Homo sapiens
Macromolecule	AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2 (protein) LARGE ENVELOPE PROTEIN (protein)
Unique Ligands	EDO, PEG

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3ZLZ \| pdb_00003zlz	Download File View File

Lys6-linked tri-ubiquitin

Hospenthal, M.K., Freund, S.M.V., Komander, D.

(2013) Nat Struct Mol Biol 20: 555

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN (protein)
Unique Ligands	ZN

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4BCX \| pdb_00004bcx	Download File View File

gamma 2 adaptin EAR domain crystal structure

Juergens, M.C., Voros, J., Rautureau, G., Shepherd, D., Pye, V.E., Muldoon, J., Johnson, C.M., Ashcroft, A., Freund, S.M.V., Ferguson, N.

(2013) Nat Chem Biol 9: 540

Released	2013-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2 (protein)
Unique Ligands	IMD, PDO

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4BOP \| pdb_00004bop	Download File View File

Structure of OTUD1 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	OTU DOMAIN-CONTAINING PROTEIN 1 (protein)
Unique Ligands	PO4

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4BOQ \| pdb_00004boq	Download File View File

Structure of OTUD2 OTU domain

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	GOL

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4BOS \| pdb_00004bos	Download File View File

Structure of OTUD2 OTU domain in complex with Ubiquitin K11-linked peptide

Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

(2013) Cell 154: 169

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	OTUD2 (protein) POLYUBIQUITIN-C (protein) UBIQUITIN THIOESTERASE OTU1 (protein)
Unique Ligands	MG, NO3

1 to 25 of 49 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AB7 | pdb_00001ab7

1BTA | pdb_00001bta

1BTB | pdb_00001btb

1GO0 | pdb_00001go0

1GO1 | pdb_00001go1

1H1J | pdb_00001h1j

1ZTR | pdb_00001ztr

2L9N | pdb_00002l9n

2V0E | pdb_00002v0e

2V0F | pdb_00002v0f

2VYT | pdb_00002vyt

2X35 | pdb_00002x35

2X4W | pdb_00002x4w

2X4X | pdb_00002x4x

2X4Y | pdb_00002x4y

2XEW | pdb_00002xew

2Y9T | pdb_00002y9t

2Y9U | pdb_00002y9u

2YMT | pdb_00002ymt

3ZHF | pdb_00003zhf

3ZLZ | pdb_00003zlz

4BCX | pdb_00004bcx

4BOP | pdb_00004bop

4BOQ | pdb_00004boq

4BOS | pdb_00004bos