RCSB PDB: Search

1NWB	Download File View File

Solution NMR Structure of Protein AQ_1857 from Aquifex aeolicus: Northeast Structural Genomics Consortium Target QR6.

Xu, D., Liu, G., Xiao, R., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2004) Proteins 54: 794-796

Released	2003-06-03
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	Hypothetical protein AQ_1857 (protein)

Explore in 3D

1PUZ	Download File View File

Solution NMR Structure of Protein NMA1147 from Neisseria meningitidis. Northeast Structural Genomics Consortium Target MR19

Liu, G., Xu, D., Sukumaran, D.K., Chiang, Y., Acton, T., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2004) Proteins 55: 756-758

Released	2004-06-29
Method	SOLUTION NMR
Organisms	Neisseria meningitidis MC58
Macromolecule	conserved hypothetical protein (protein)

Explore in 3D

1XN6	Download File View File

Solution Structure of Northeast Structural Genomics Target Protein BcR68 encoded in gene Q816V6 of B. cereus

Liu, G., Acton, T., Parish, D., Ma, L., Xu, D., Xiao, R., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2005) Proc Natl Acad Sci U S A 102: 10487-10492

Released	2004-12-14
Method	SOLUTION NMR
Organisms	Bacillus cereus
Macromolecule	hypothetical protein BC4709 (protein)

Explore in 3D

2GZO	Download File View File

NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39

Singarapu, K.K., Liu, G., Eletsky, A., Xu, D., Sukumaran, D.K., Mei, J., Xiao, R., Cunningham, K., Ma, L.C., Ritu, S., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-06-20
Method	SOLUTION NMR
Organisms	Shewanella oneidensis
Macromolecule	UPF0301 protein SO3346 (protein)

Explore in 3D

2HFD	Download File View File

NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415

Singarapu, K.K., Liu, G., Eletsky, A., Parish, D., Atreya, H.S., Xu, D., Janjua, H., Cunningham, K., Ma, L.C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2008) J Struct Funct Genomics 9: 41-49

Released	2006-08-22
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Hydrogenase-1 operon protein hyaE (protein)

Explore in 3D

2HFI	Download File View File

Solution NMR Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213

Liu, G., Singarapu, K.K., Parish, D., Eletsky, A., Xu, D., Sukumaran, D., Ho, C.K., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-07-25
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Hypothetical protein yppE (protein)

Explore in 3D

2HG7	Download File View File

Solution NMR structure of Phage-like element PBSX protein xkdW, Northeast Structural Genomics Consortium Target SR355

Liu, G., Parish, D., Xu, D., Atreya, H., Sukumaran, D., Ho, C.K., Jiang, M., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-08-22
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Phage-like element PBSX protein xkdW (protein)

Explore in 3D

2HI6	Download File View File

Solution NMR structure of UPF0107 protein AF_0055, Northeast Structural Genomics Consortium Target GR101

Liu, G., Atreya, H., Xu, D., Sukumaran, D.K., Chen, C.X., Janjua, H., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-08-29
Method	SOLUTION NMR
Organisms	Archaeoglobus fulgidus
Macromolecule	UPF0107 protein AF0055 (protein)

Explore in 3D

2JPU	Download File View File

solution structure of NESG target SsR10, Orf c02003 protein

Wu, Y., Singarapu, K.K., Zhang, Q., Eletski, A., Xu, D., Sukumaran, D., Parish, D., Wang, D., Jiang, M., Cunningham, K., Maglaqui, M., Owens, L., Xiao, R., Liu, J., Baran, M., Swapna, G.V.T., Acton, T., Rost, B., Montelione, G., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-07-03
Method	SOLUTION NMR
Organisms	Saccharolobus solfataricus
Macromolecule	Orf c02003 protein (protein)

Explore in 3D

2JS4	Download File View File

Solution NMR Structure of Bordetella bronchiseptica protein BB2007. Northeast Structural Genomics Consortium target BoR54

Eletsky, A., Sukumaran, D., Wu, Y., Singarapu, K., Parish, D., Xu, D., Wang, D., Nwosu, C., Cunningham, K., Xiao, R., Liu, J., Baran, M.C., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-07-10
Method	SOLUTION NMR
Organisms	Bordetella bronchiseptica RB50
Macromolecule	UPF0434 protein BB2007 (protein)

Explore in 3D

2JVM	Download File View File

Solution NMR structure of Rhodobacter sphaeroides protein RHOS4_26430. Northeast Structural Genomics Consortium target RhR95

Eletsky, A., Sukumaran, D., Zhang, Q., Parish, D., Xu, D., Wang, H., Janjua, H., Owens, L., Xiao, R., Liu, J., Baran, M.C., Swapna, G.V.T., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-10-16
Method	SOLUTION NMR
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

2K71	Download File View File

Structure and dynamics of a DNA GNRA hairpin solved vy high-sensitivity NMR with two independent converging methods, simulated annealing (DYANA) and mesoscopic molecular modelling (BCE/AMBER)

Santini, G.P.H., Cognet, J.A.H., Xu, D., Singarapu, K.K., Herve du Penhoat, C.L.M.

(2009) J Phys Chem B 113: 6881-6893

Released	2009-07-21
Method	SOLUTION NMR
Macromolecule	5'-D(DGPDCPDGPDAPDAPDAPDGPDC)-3' (nucleic acid)

Explore in 3D

3BD9	Download File View File

human 3-O-sulfotransferase isoform 5 with bound PAP

Xu, D., Moon, A.F., Song, D., Liu, J., Pedersen, L.C.

(2008) Nat Chem Biol 4: 200-202

Released	2008-01-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Heparan sulfate glucosamine 3-O-sulfotransferase 5 (protein)
Unique Ligands	A3P

Explore in 3D

3F5F	Download File View File

Crystal structure of heparan sulfate 2-O-sulfotransferase from gallus gallus as a maltose binding protein fusion.

Bethea, H.N., Xu, D., Liu, J., Pedersen, L.C.

(2008) Proc Natl Acad Sci U S A 105: 18724-18729

Released	2008-12-16
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli K-12 Gallus gallus
Macromolecule	Maltose-binding periplasmic protein, Heparan sulfate 2-O-sulfotransferase 1 (protein)
Unique Ligands	A3P
Unique branched monosaccharides	GLC

Explore in 3D

3MXN	Download File View File

Crystal structure of the RMI core complex

Hoadley, K.A., Xu, D., Xue, Y., Satyshur, K.A., Wang, W., Keck, J.L.

(2010) Structure 18: 1149-1158

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	RecQ-mediated genome instability protein 1 (protein) RecQ-mediated genome instability protein 2 (protein)
Unique Ligands	BEN

Explore in 3D

3S1S	Download File View File

Characterization and crystal structure of the type IIG restriction endonuclease BpuSI

Shen, B.W., Xu, D., Chan, S.-H., Zheng, Y., Zhu, Y., Xu, S.-Y., Stoddard, B.L.

(2011) Nucleic Acids Res 39: 8223-8236

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bacillus pumilus
Macromolecule	restriction endonuclease BpuSI (protein)
Unique Ligands	EDO, IOD, MN, SAH

Explore in 3D

4I35	Download File View File

The crystal structure of serralysin

Zou, M., Ran, T., Xu, D., Wang, W.

To be published

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.501 Å
Organisms	Serratia
Macromolecule	Serralysin (protein)
Unique Ligands	CA, GOL, HEX, OCT, ZN

Explore in 3D

4IM8	Download File View File

low resolution crystal structure of mouse RAGE

Xu, D., Young, J.H., Krahn, J.M., Song, D., Corbett, K.D., Chazin, W.J., Pedersen, L.C., Esko, J.D.

(2013) ACS Chem Biol 8: 1611-1620

Released	2013-08-14
Method	X-RAY DIFFRACTION 3.503 Å
Organisms	Mus musculus
Macromolecule	Advanced glycation end-products receptor (protein)

Explore in 3D

4WJA	Download File View File

Crystal Structure of PAXX

Xing, M., Yang, M., Huo, W., Feng, F., Wei, L., Ning, S., Yan, Z., Li, W., Wang, Q., Hou, M., Dong, C., Guo, R., Gao, G., Ji, J., Lan, L., Liang, H., Xu, D.

(2015) Nat Commun 6: 6233-6233

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein C9orf142 (protein)

Explore in 3D

5CIO	Download File View File

Crystal structure of PqqF

Wei, Q., Xu, D., Ran, T., Wang, W.

(2016) J Biological Chem 291: 15575-15587

Released	2016-06-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Serratia sp. FS14
Macromolecule	pyrroloquinoline quinone biosynthesis protein PqqF (protein)
Unique Ligands	ZN

Explore in 3D

5CZW	Download File View File

Crystal structure of myroilysin

Zhou, J., Ran, T., Xu, D., Wang, W.

(2017) J Biological Chem 292: 5195-5206

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Myroides profundi
Macromolecule	Myroilysin (protein)
Unique Ligands	ZN

Explore in 3D

5GP7	Download File View File

Structural basis for the binding between Tankyrase-1 and USP25

Liu, J., Xu, D., Fu, T., Pan, L.

(2017) Genes Dev 31: 1024-1035

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.502 Å
Organisms	Homo sapiens
Macromolecule	Tankyrase-1 (protein) Ubiquitin carboxyl-terminal hydrolase 25 (protein)
Unique Ligands	GOL

Explore in 3D

5GWD	Download File View File

Structure of Myroilysin

Xu, D., Ran, T., Wang, W.

(2017) J Biological Chem 292: 5195-5206

Released	2017-02-15
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Myroides sp. CSLB8
Macromolecule	Myroilysin (protein)
Unique Ligands	ZN

Explore in 3D

5GXT	Download File View File

Crystal structure of PigG

Zhang, F., Ran, T., Xu, D., Wang, W.

(2017) Int J Biol Macromol 99: 394-400

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.245 Å
Organisms	Escherichia coli K-12 Serratia sp. FS14
Macromolecule	Maltose-binding periplasmic protein,PigG (protein)
Unique Ligands	MG

Explore in 3D

5GXV	Download File View File

Crystal structure of PigG

Zhang, F., Ran, T., Xu, D., Wang, W.

(2017) Int J Biol Macromol 99: 394-400

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12 Serratia
Macromolecule	Maltose-binding periplasmic protein,PigG (protein)
Unique Ligands	MG

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification