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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Grishin, A.M."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Escherichia coli str. K-12 substr. MG1655 (7)
	Homo sapiens (3)
	Escherichia coli O157:H7 (2)
	Saccharomyces cerevisiae S288C (2)
	Shigella sonnei Ss046 (2)
	Escherichia coli K-12 (1)
	Escherichia coli O127:H6 str. E2348/69 (1)
	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
	Thermoactinomyces vulgaris (1)

Taxonomy

	Bacteria (15)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (4)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (14)
	2020 - 2024 (1)

Enzyme Classification Name

	Oxidoreductases (8)
	Transferases (4)
	Ligases (2)
	Hydrolases (1)
	Isomerases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (12)
	Cyclic (10)
	Dihedral (1)

SCOP Classification

	All alpha proteins (7)
	Artifacts (9)
	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 15 of 15 Structures

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3PRT \| pdb_00003prt	Download File View File

Mutant of the Carboxypeptidase T

Timofeev, V.I., Akparov, V.K., Grishin, A.M., Kuranova, I.P.

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Thermoactinomyces vulgaris
Macromolecule	Carboxypeptidase T (protein)
Unique Ligands	CA, GOL, SO4, ZN

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3PVR \| pdb_00003pvr	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with benzoyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biological Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	BYC, GOL

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3PVT \| pdb_00003pvt	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with 3-hydroxybutanoyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biological Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	3HC, GOL

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3PVY \| pdb_00003pvy	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with coenzyme A

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biological Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	COA, GOL

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3PW1 \| pdb_00003pw1	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with phenylacetyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biological Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	FAQ, GOL

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3PW8 \| pdb_00003pw8	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with acetyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biological Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	ACO

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3PWQ \| pdb_00003pwq	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biological Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)

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4FZW \| pdb_00004fzw	Download File View File

Crystal Structure of the PaaF-PaaG Hydratase-Isomerase Complex from E.coli

Grishin, A.M., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2012) J Biological Chem 287: 37986-37996

Released	2012-09-19
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli K-12
Macromolecule	1,2-epoxyphenylacetyl-CoA isomerase (protein) 2,3-dehydroadipyl-CoA hydratase (protein)
Unique Ligands	GOL

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4II4 \| pdb_00004ii4	Download File View File

The Phenylacetyl-CoA monooxygenase - mutant PaaA E49Q K68Q - PaaC wild type subcomplex with benzoyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

To be published

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.799 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	1,2-phenylacetyl-CoA epoxidase, subunit A (protein) 1,2-phenylacetyl-CoA epoxidase, subunit C (protein)
Unique Ligands	BYC

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4IIT \| pdb_00004iit	Download File View File

The Phenylacetyl-CoA monooxygenase PaaABC subcomplex with phenylacetyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2013) J Struct Biol 184: 147-154

Released	2013-11-06
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Phenylacetate-CoA oxygenase subunit PaaA (protein) Phenylacetate-CoA oxygenase subunit PaaB (protein) Phenylacetate-CoA oxygenase subunit PaaC (protein)
Unique Ligands	FAQ

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4LRJ \| pdb_00004lrj	Download File View File

Bacterial Effector NleH1 Kinase Domain with AMPPNP and Mg2+

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2014) Structure 22: 250-259

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.619 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Effector NleH1 (protein)
Unique Ligands	ANP, MG

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4LRK \| pdb_00004lrk	Download File View File

Bacterial Effector NleH2 Kinase Domain

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2014) Structure 22: 250-259

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.274 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Effector NleH2 (protein)

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4Q5E \| pdb_00004q5e	Download File View File

Shigella Effector Kinase OspG bound to E2-Ub UbcH7-Ub Conjugate

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2014) Structure 22: 878-888

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.869 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C Shigella sonnei Ss046
Macromolecule	Polyubiquitin (protein) Protein kinase OspG (protein) Ubiquitin-conjugating enzyme E2 L3 (protein)

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4Q5H \| pdb_00004q5h	Download File View File

Shigella Effector Kinase OspG bound to AMPPNP and E2-Ub UbcH7-Ub Conjugate

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2014) Structure 22: 878-888

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C Shigella sonnei Ss046
Macromolecule	Polyubiquitin (protein) Protein kinase OspG (protein) Ubiquitin-conjugating enzyme E2 L3 (protein)
Unique Ligands	ANP, MG

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7TZK \| pdb_00007tzk	Download File View File

EPS8 SH3 Domain with NleH1 PxxDY Motif

Grishin, A.M., Cygler, M.

(2022) Proc Natl Acad Sci U S A 119: e2204332119-e2204332119

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Escherichia coli O127:H6 str. E2348/69 Homo sapiens
Macromolecule	Epidermal growth factor receptor kinase substrate 8 (protein) T3SS secreted effector NleH homolog (protein)

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3PRT | pdb_00003prt

Mutant of the Carboxypeptidase T

3PVR | pdb_00003pvr

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with benzoyl-CoA

3PVT | pdb_00003pvt

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with 3-hydroxybutanoyl-CoA

3PVY | pdb_00003pvy

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with coenzyme A

3PW1 | pdb_00003pw1

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with phenylacetyl-CoA

3PW8 | pdb_00003pw8

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with acetyl-CoA

3PWQ | pdb_00003pwq

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex

4FZW | pdb_00004fzw

Crystal Structure of the PaaF-PaaG Hydratase-Isomerase Complex from E.coli

4II4 | pdb_00004ii4

The Phenylacetyl-CoA monooxygenase - mutant PaaA E49Q K68Q - PaaC wild type subcomplex with benzoyl-CoA

4IIT | pdb_00004iit

The Phenylacetyl-CoA monooxygenase PaaABC subcomplex with phenylacetyl-CoA

4LRJ | pdb_00004lrj

Bacterial Effector NleH1 Kinase Domain with AMPPNP and Mg2+

4LRK | pdb_00004lrk

Bacterial Effector NleH2 Kinase Domain

4Q5E | pdb_00004q5e

Shigella Effector Kinase OspG bound to E2-Ub UbcH7-Ub Conjugate

4Q5H | pdb_00004q5h

Shigella Effector Kinase OspG bound to AMPPNP and E2-Ub UbcH7-Ub Conjugate

7TZK | pdb_00007tzk

EPS8 SH3 Domain with NleH1 PxxDY Motif

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3PRT | pdb_00003prt

3PVR | pdb_00003pvr

3PVT | pdb_00003pvt

3PVY | pdb_00003pvy

3PW1 | pdb_00003pw1

3PW8 | pdb_00003pw8

3PWQ | pdb_00003pwq

4FZW | pdb_00004fzw

4II4 | pdb_00004ii4

4IIT | pdb_00004iit

4LRJ | pdb_00004lrj

4LRK | pdb_00004lrk

4Q5E | pdb_00004q5e

4Q5H | pdb_00004q5h

7TZK | pdb_00007tzk