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1DJD \| pdb_00001djd	Download File View File

THE SOLUTION STRUCTURE OF A NON-BAY REGION 11R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 14820-14832

Released	1999-12-16
Method	SOLUTION NMR
Macromolecule	DNA(5'-D(CTGTGTATCTATATGTATATG)-3') (nucleic acid) DNA(5'-D(CTTTTTCTTTTTGTTTCTCTG)-3') (nucleic acid)
Unique Ligands	TBT

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1DL4 \| pdb_00001dl4	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 16045-16057

Released	2000-01-12
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)
Unique Ligands	BZA

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1HZ2 \| pdb_00001hz2	Download File View File

SOLUTION NMR STRUCTURE OF SELF-COMPLEMENTARY DUPLEX 5'-D(AGGCGCCT)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G. MODEL OF A MALONDIALDEHYDE CROSSLINK

Dooley, P.A., Tsarouhtsis, D., Korbel, G.A., Nechev, L.V., Shearer, J., Zegar, I.S., Harris, C.M., Stone, M.P., Harris, T.M.

(2001) J Am Chem Soc 123: 1730-1739

Released	2001-02-07
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APGPGPCPGPCPCPT)-3') (nucleic acid)
Unique Ligands	TME

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1I7V \| pdb_00001i7v	Download File View File

THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Tamura, P.J., Wilkinson, A.S., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 6743-6755

Released	2001-03-28
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCPAP(BZA)APGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)
Unique Ligands	BZA

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1K5E \| pdb_00001k5e	Download File View File

Solution Structure of R-styrene Adduct in the Ras61 Sequence

Hennard, C., Finneman, J., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 9780-9791

Released	2002-01-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(ABR)PAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)

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1K5F \| pdb_00001k5f	Download File View File

SOLUTION STRUCTURE OF THE S-STYRENE ADDUCT IN THE RAS61 SEQUENCE

Hennard, C., Finneman, J., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 9780-9791

Released	2002-01-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(ABS)PAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)

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1LUH \| pdb_00001luh	Download File View File

SOLUTION NMR STRUCTURE OF SELF-COMPLIMENTARY DUPLEX 5'-D(TCCGCGGA)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G

Dooley, P.D., Zhang, M., Korbel, G.A., Nechev, L.V., Harris, C.M., Stone, M.P., Harris, T.M.

(2003) J Am Chem Soc 125: 62-72

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(TPCPCP(TME)GPCPGPGPA)-3' (nucleic acid)
Unique Ligands	TME

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1MXJ \| pdb_00001mxj	Download File View File

NMR solution structure of benz[a]anthracene-dG in ras codon 12,2; GGCAGXTGGTG

Kim, H.-Y.H., Wilkinson, A.S., Harris, C.M., Harris, T.M., Stone, M.P.

(2003) Biochemistry 42: 2328-2338

Released	2003-03-11
Method	SOLUTION NMR
Macromolecule	5'-D(CPAPCPCPAPCPCPTPGPCPC)-3' (nucleic acid) 5'-D(GPGPCPAPGPGPTPGPGPTPG)-3' (nucleic acid)
Unique Ligands	BZR

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1QBY \| pdb_00001qby	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Mao, H., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 2969-2981

Released	1999-05-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCP G)-3' (nucleic acid)
Unique Ligands	BZA

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1U6C \| pdb_00001u6c	Download File View File

The NMR-derived solution structure of the (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide

Scholdberg, T.A., Nechev, L.N., Merritt, W.K., Harris, T.M., Harris, C.M., Lloyd, R.S., Stone, M.P.

(2004) Chem Res Toxicol 17: 717-730

Released	2004-08-17
Method	SOLUTION NMR
Macromolecule	(2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide (nucleic acid)

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1U6N \| pdb_00001u6n	Download File View File

Solution Structure of an Oligodeoxynucleotide Containing a Butadiene Derived N1 b-Hydroxyalkyl Adduct on Deoxyinosine in the Human N-ras Codon 61 Sequence

Scholdberg, T.A., Merritt, W.K., Dean, S.M., Kowalcyzk, A., Harris, T.M., Harris, C.M., Lloyd, R.S., Stone, M.P.

(2005) Biochemistry 44: 3327-3337

Released	2004-08-10
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(2BD)PAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)

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1U6O \| pdb_00001u6o	Download File View File

Mispairing of a Site-Specific Major Groove (2S,3S)-N6-(2,3,4-Trihydroxybutyl)-2-deoxyadenosyl DNA Adduct of Butadiene Diol Epoxide with Deoxyguanosine: Formation of a dA(anti)dG(anti) Pairing Interaction

Scholdberg, T.A., Nechev, L.N., Merritt, W.K., Harris, T.M., Harris, C.M., Lloyd, R.S., Stone, M.P.

(2005) Chem Res Toxicol 18: 145-153

Released	2004-08-10
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(2BU)PAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPGPGPTPCPCPG)-3' (nucleic acid)

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2KNK \| pdb_00002knk	Download File View File

Structure of the trimethylene N2-dG:N2-dG interstrand cross-link in 5'-CpG-3' sequence context

Huang, H., Dooley, P.A., Harris, C.M., Harris, T.M., Stone, M.P.

(2009) Chem Res Toxicol 22: 1810-1816

Released	2009-09-29
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APGPGPCPGPCPCPT)-3') (nucleic acid)
Unique Ligands	TME

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2KNL \| pdb_00002knl	Download File View File

Structure of the trimethylene N2-dG:N2-dG interstrand cross-link in the 5'-GpC-3' sequence context

Huang, H., Dooley, P.A., Harris, C.M., Harris, T.M., Stone, M.P.

(2009) Chem Res Toxicol 22: 1810-1816

Released	2009-09-29
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TPCPCPGPCPGPGPA)-3') (nucleic acid)
Unique Ligands	TME

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5EUD \| pdb_00005eud	Download File View File

S1P Lyase Bacterial Surrogate bound to N-(1-(4-(3-hydroxyprop-1-yn-1-yl)phenyl)-2-((4-methoxy-2,5-dimethylbenzyl)amino)ethyl)-5-methylisoxazole-3-carboxamide

Argiriadi, M.A., Banach, D., Radziejewska, E., Marchie, S., DiMauro, J., Dinges, J., Dominguez, E., Hutchins, C., Judge, R.A., Queeney, K., Wallace, G., Harris, C.M.

(2016) Bioorg Med Chem Lett 26: 2293-2296

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Symbiobacterium thermophilum IAM 14863
Macromolecule	Putative sphingosine-1-phosphate lyase (protein)
Unique Ligands	5S6, PO4

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5EUE \| pdb_00005eue	Download File View File

S1P Lyase Bacterial Surrogate bound to N-(2-((4-methoxy-2,5-dimethylbenzyl)amino)-1-phenylethyl)-5-methylisoxazole-3-carboxamide

Argiriadi, M.A., Banach, D., Radziejewska, E., Marchie, S., DiMauro, J., Dinges, J., Dominguez, E., Hutchins, C., Judge, R.A., Queeney, K., Wallace, G., Harris, C.M.

(2016) Bioorg Med Chem Lett 26: 2293-2296

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Symbiobacterium thermophilum IAM 14863
Macromolecule	Putative sphingosine-1-phosphate lyase (protein)
Unique Ligands	5S5, PO4

1DJD | pdb_00001djd

THE SOLUTION STRUCTURE OF A NON-BAY REGION 11R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

1DL4 | pdb_00001dl4

THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

1HZ2 | pdb_00001hz2

SOLUTION NMR STRUCTURE OF SELF-COMPLEMENTARY DUPLEX 5'-D(AGGCGCCT)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G. MODEL OF A MALONDIALDEHYDE CROSSLINK

1I7V | pdb_00001i7v

THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

1K5E | pdb_00001k5e

Solution Structure of R-styrene Adduct in the Ras61 Sequence

1K5F | pdb_00001k5f

SOLUTION STRUCTURE OF THE S-STYRENE ADDUCT IN THE RAS61 SEQUENCE

1LUH | pdb_00001luh

SOLUTION NMR STRUCTURE OF SELF-COMPLIMENTARY DUPLEX 5'-D(TCCGCGGA)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G

1MXJ | pdb_00001mxj

NMR solution structure of benz[a]anthracene-dG in ras codon 12,2; GGCAGXTGGTG

1QBY | pdb_00001qby

THE SOLUTION STRUCTURE OF A BAY-REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

1U6C | pdb_00001u6c

The NMR-derived solution structure of the (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide

1U6N | pdb_00001u6n

Solution Structure of an Oligodeoxynucleotide Containing a Butadiene Derived N1 b-Hydroxyalkyl Adduct on Deoxyinosine in the Human N-ras Codon 61 Sequence

1U6O | pdb_00001u6o

Mispairing of a Site-Specific Major Groove (2S,3S)-N6-(2,3,4-Trihydroxybutyl)-2-deoxyadenosyl DNA Adduct of Butadiene Diol Epoxide with Deoxyguanosine: Formation of a dA(anti)dG(anti) Pairing Interaction

2KNK | pdb_00002knk

Structure of the trimethylene N2-dG:N2-dG interstrand cross-link in 5'-CpG-3' sequence context

2KNL | pdb_00002knl

Structure of the trimethylene N2-dG:N2-dG interstrand cross-link in the 5'-GpC-3' sequence context

5EUD | pdb_00005eud

S1P Lyase Bacterial Surrogate bound to N-(1-(4-(3-hydroxyprop-1-yn-1-yl)phenyl)-2-((4-methoxy-2,5-dimethylbenzyl)amino)ethyl)-5-methylisoxazole-3-carboxamide

5EUE | pdb_00005eue

S1P Lyase Bacterial Surrogate bound to N-(2-((4-methoxy-2,5-dimethylbenzyl)amino)-1-phenylethyl)-5-methylisoxazole-3-carboxamide

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1DJD | pdb_00001djd

1DL4 | pdb_00001dl4

1HZ2 | pdb_00001hz2

1I7V | pdb_00001i7v

1K5E | pdb_00001k5e

1K5F | pdb_00001k5f

1LUH | pdb_00001luh

1MXJ | pdb_00001mxj

1QBY | pdb_00001qby

1U6C | pdb_00001u6c

1U6N | pdb_00001u6n

1U6O | pdb_00001u6o

2KNK | pdb_00002knk

2KNL | pdb_00002knl

5EUD | pdb_00005eud

5EUE | pdb_00005eue