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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Itoh, H."

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Norwalk-like virus (5)
	Saccharomyces cerevisiae S288C (2)
	Bos taurus (1)
	Chromobacterium sp. (1)
	Mus musculus (1)
	Rattus norvegicus (1)

Taxonomy

	Riboviria (5)
	Eukaryota (3)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (6)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.5 - 3.0 (1)

Release Date

2010 - 2014 (8)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Cyclic (5)
	Asymmetric (3)

SCOP Classification

	All beta proteins (6)
	All alpha proteins (2)
	Artifacts (1)

AllSelected

1 to 8 of 8 Structures

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2LHH \| pdb_00002lhh	Download File View File

Solution structure of Ca2+-bound yCaM

Ogura, K., Takahashi, K., Kobashigawa, Y., Yoshida, R., Itoh, H., Yazawa, M., Inagaki, F.

(2012) Genes Cells 17: 159-172

Released	2012-08-29
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Calmodulin (protein)
Unique Ligands	CA

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2LHI \| pdb_00002lhi	Download File View File

Solution structure of Ca2+/CNA1 peptide-bound yCaM

Ogura, K., Takahashi, K., Kobashigawa, Y., Yoshida, R., Itoh, H., Yazawa, M., Inagaki, F.

(2012) Genes Cells 17: 159-172

Released	2012-08-29
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1 (protein)
Unique Ligands	CA

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3AH8 \| pdb_00003ah8	Download File View File

Structure of heterotrimeric G protein Galpha-q beta gamma in complex with an inhibitor YM-254890

Nishimura, A., Kitano, K., Takasaki, J., Taniguchi, M., Mizuno, N., Tago, K., Hakoshima, T., Itoh, H.

(2010) Proc Natl Acad Sci U S A 107: 13666-13671

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus Chromobacterium sp. Mus musculus Rattus norvegicus
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1/Guanine nucleotide-binding protein G(q) subunit alpha chimeric protein (protein) YM-254890 (protein)
Unique Ligands	GDP

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3ASP \| pdb_00003asp	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA
Unique branched monosaccharides	A2G, FUC, GAL, NAG

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3ASQ \| pdb_00003asq	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASR \| pdb_00003asr	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3ASS \| pdb_00003ass	Download File View File

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

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3AST \| pdb_00003ast	Download File View File

Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b

Kubota, T., Kumagai, A., Itoh, H., Furukawa, S., Narimatsu, H., Wakita, T., Ishii, K., Takeda, N., Someya, Y., Shirato, H.

(2012) J Virol 86: 11138-11150

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Norwalk-like virus
Macromolecule	Capsid protein (protein)
Unique Ligands	NA, NPO
Unique branched monosaccharides	FUC, GAL, NAG

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2LHH | pdb_00002lhh

Solution structure of Ca2+-bound yCaM

2LHI | pdb_00002lhi

Solution structure of Ca2+/CNA1 peptide-bound yCaM

3AH8 | pdb_00003ah8

Structure of heterotrimeric G protein Galpha-q beta gamma in complex with an inhibitor YM-254890

3ASP | pdb_00003asp

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with A-antigen

3ASQ | pdb_00003asq

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with H-antigen

3ASR | pdb_00003asr

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-a

3ASS | pdb_00003ass

Crystal structure of P domain from Norovirus Funabashi258 stain in the complex with Lewis-b

3AST | pdb_00003ast

Crystal structure of P domain Q389N mutant from Norovirus Funabashi258 stain in the complex with Lewis-b

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2LHH | pdb_00002lhh

2LHI | pdb_00002lhi

3AH8 | pdb_00003ah8

3ASP | pdb_00003asp

3ASQ | pdb_00003asq

3ASR | pdb_00003asr

3ASS | pdb_00003ass

3AST | pdb_00003ast