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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "James, R."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Escherichia coli (13)
	Staphylococcus simulans (2)
	Staphylococcus simulans bv. staphylolyticus (1)

Taxonomy

Bacteria (16)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (8)
	2005 - 2009 (1)
	2010 - 2014 (3)

Enzyme Classification Name

	Hydrolases (8)
	Lyases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (2)

SCOP Classification

	All alpha proteins (9)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (2)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

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1AYI \| pdb_00001ayi	Download File View File

COLICIN E7 IMMUNITY PROTEIN IM7

Dennis, C.A., Pauptit, R.A., Wallis, R., James, R., Moore, G.R., Kleanthous, C.

(1998) Biochem J 333 ( Pt 1): 183-191

Released	1998-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E IMMUNITY PROTEIN 7 (protein)

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1BXI \| pdb_00001bxi	Download File View File

CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9

Kuhlmann, U.C., Kleanthous, C., James, R., Moore, G.R., Hemmings, A.M.

(1998) Thesis

Released	1999-10-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (COLICIN E9 IMMUNITY PROTEIN) (protein) PROTEIN (COLICIN E9) (protein)
Unique Ligands	NI, PO4

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1C5K \| pdb_00001c5k	Download File View File

THE STRUCTURE OF TOLB, AN ESSENTIAL COMPONENT OF THE TOL-DEPENDENT TRANSLOCATION SYSTEM AND ITS INTERACTIONS WITH THE TRANSLOCATION DOMAIN OF COLICIN E9

Carr, S., Penfold, C.N., Bamford, V., James, R., Hemmings, A.M.

(2000) Structure 8: 57-66

Released	2000-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (TOLB PROTEIN) (protein)
Unique Ligands	YB

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1E0H \| pdb_00001e0h	Download File View File

Inhibitor Protein Im9 bound to its partner E9 DNase

Boetzel, R., Czisch, M., Kaptein, R., Hemmings, A.M., James, R., Kleanthous, C., Moore, G.R.

(2000) Protein Sci 9: 1709-1718

Released	2000-10-30
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	IMMUNITY PROTEIN FOR COLICIN E9 (protein)

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1E44 \| pdb_00001e44	Download File View File

ribonuclease domain of colicin E3 in complex with its immunity protein

Carr, S., Walker, D., James, R., Kleanthous, C., Hemmings, A.M.

(2000) Structure 8: 949

Released	2001-06-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E3 (protein) IMMUNITY PROTEIN (protein)
Unique Ligands	EDO

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1EMV \| pdb_00001emv	Download File View File

CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS)

Kuhlmann, U.C., Pommer, A.J., Moore, G.M., James, R., Kleanthous, C.

(2000) J Mol Biology 301: 1163-1178

Released	2000-09-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) IMMUNITY PROTEIN IM9 (protein)
Unique Ligands	PO4

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1FR2 \| pdb_00001fr2	Download File View File

CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN WITH A MUTANT IMMUNITY PROTEIN IM9(E41A)

Kuhlmann, U.C., Pommer, A.J., Moore, G.M., James, R., Kleanthous, C., Hemmings, A.M.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN E9 IMMUNITY PROTEIN (protein)
Unique Ligands	PO4, ZN

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1FSJ \| pdb_00001fsj	Download File View File

CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN

Kuhlmann, U.C., Pommer, A.J., Moore, G.R., James, R., Kleanthous, C., Hemmings, A.M.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein)
Unique Ligands	PO4, ZN

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1GXG \| pdb_00001gxg	Download File View File

Non-cognate protein-protein interactions: the NMR structure of the colicin E8 inhibitor protein Im8 and its interaction with the DNase domain of colicin E9

Le Duff, C.S., Videler, H., Boetzel, R., Czisch, M., James, R., Kleanthous, C., Moore, G.R.

To be published

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	COLICIN E8 IMMUNITY PROTEIN (protein)

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1GXH \| pdb_00001gxh	Download File View File

Colicin E8 DNAse immunity protein: Im8

Leduff, C.S., Videler, H., Boetzel, R., Czisch, M., James, R., Kleanthous, C., Moore, G.R.

To be published

Released	2002-05-01
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	COLICIN E8 IMMUNITY PROTEIN (protein)

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1IMP \| pdb_00001imp	Download File View File

COLICIN E9 IMMUNITY PROTEIN IM9, NMR, 21 STRUCTURES

Osborne, M.J., Breeze, A.L., Lian, L.-Y., Reilly, A., James, R., Kleanthous, C., Moore, G.R.

(1996) Biochemistry 35: 9505-9512

Released	1997-09-17
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	IM9 (protein)

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1IMQ \| pdb_00001imq	Download File View File

COLICIN E9 IMMUNITY PROTEIN IM9, NMR, MINIMIZED AVERAGE STRUCTURE

Osborne, M.J., Breeze, A.L., Lian, L.Y., Reilly, A., James, R., Kleanthous, C., Moore, G.R.

(1996) Biochemistry 35: 9505-9512

Released	1997-07-07
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	IM9 (protein)

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2IVZ \| pdb_00002ivz	Download File View File

Structure of TolB in complex with a peptide of the colicin E9 T- domain

Loftus, S.R., Walker, D., Mate, M.J., Bonsor, D.A., James, R., Moore, G.R., Kleanthous, C.

(2006) Proc Natl Acad Sci U S A 103: 12353

Released	2006-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN-E9 (protein) PROTEIN TOLB (protein)
Unique Ligands	CA

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4LXC \| pdb_00004lxc	Download File View File

The antimicrobial peptidase lysostaphin from Staphylococcus simulans

Sabala, I., Jagielska, E., Bardelang, P.T., Czapinska, H., Dahms, S.O., Sharpe, J.A., James, R., Than, M.E., Thomas, N.R., Bochtler, M.

(2014) FEBS J 281: 4112-4122

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Staphylococcus simulans
Macromolecule	Lysostaphin (protein)
Unique Ligands	SO4, ZN

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4QP5 \| pdb_00004qp5	Download File View File

Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate

Sabala, I., Jagielska, E., Bardelang, P.T., Czapinska, H., Dahms, S.O., Sharpe, J.A., James, R., Than, M.E., Thomas, N.R., Bochtler, M.

(2014) FEBS J 281: 4112-4122

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Staphylococcus simulans bv. staphylolyticus
Macromolecule	Lysostaphin (protein)
Unique Ligands	GOL, PO4, ZN

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4QPB \| pdb_00004qpb	Download File View File

Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the absence of phosphate

Sabala, I., Jagielska, E., Bardelang, P.T., Czapinska, H., Dahms, S.O., Sharpe, J.A., James, R., Than, M.E., Thomas, N.R., Bochtler, M.

(2014) FEBS J 281: 4112-4122

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Staphylococcus simulans
Macromolecule	Lysostaphin (protein)
Unique Ligands	EDO, ZN

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AYI | pdb_00001ayi

COLICIN E7 IMMUNITY PROTEIN IM7

1BXI | pdb_00001bxi

CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9

1C5K | pdb_00001c5k

THE STRUCTURE OF TOLB, AN ESSENTIAL COMPONENT OF THE TOL-DEPENDENT TRANSLOCATION SYSTEM AND ITS INTERACTIONS WITH THE TRANSLOCATION DOMAIN OF COLICIN E9

1E0H | pdb_00001e0h

Inhibitor Protein Im9 bound to its partner E9 DNase

1E44 | pdb_00001e44

ribonuclease domain of colicin E3 in complex with its immunity protein

1EMV | pdb_00001emv

CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS)

1FR2 | pdb_00001fr2

CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN WITH A MUTANT IMMUNITY PROTEIN IM9(E41A)

1FSJ | pdb_00001fsj

CRYSTAL STRUCTURE OF THE E9 DNASE DOMAIN

1GXG | pdb_00001gxg

Non-cognate protein-protein interactions: the NMR structure of the colicin E8 inhibitor protein Im8 and its interaction with the DNase domain of colicin E9

1GXH | pdb_00001gxh

Colicin E8 DNAse immunity protein: Im8

1IMP | pdb_00001imp

COLICIN E9 IMMUNITY PROTEIN IM9, NMR, 21 STRUCTURES

1IMQ | pdb_00001imq

COLICIN E9 IMMUNITY PROTEIN IM9, NMR, MINIMIZED AVERAGE STRUCTURE

2IVZ | pdb_00002ivz

Structure of TolB in complex with a peptide of the colicin E9 T- domain

4LXC | pdb_00004lxc

The antimicrobial peptidase lysostaphin from Staphylococcus simulans

4QP5 | pdb_00004qp5

Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate

4QPB | pdb_00004qpb

Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the absence of phosphate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AYI | pdb_00001ayi

1BXI | pdb_00001bxi

1C5K | pdb_00001c5k

1E0H | pdb_00001e0h

1E44 | pdb_00001e44

1EMV | pdb_00001emv

1FR2 | pdb_00001fr2

1FSJ | pdb_00001fsj

1GXG | pdb_00001gxg

1GXH | pdb_00001gxh

1IMP | pdb_00001imp

1IMQ | pdb_00001imq

2IVZ | pdb_00002ivz

4LXC | pdb_00004lxc

4QP5 | pdb_00004qp5

4QPB | pdb_00004qpb