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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kim, K."

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Search Summary

This query matches 93 Structures.

Refinements

Structure Determination Methodology

experimental (93)

Scientific Name of Source Organism

	Homo sapiens (52)
	Trypanosoma brucei brucei (6)
	Hyphochytrium catenoides (5)
	Saccharomyces cerevisiae S288C (5)
	Opisthacanthus madagascariensis (4)
	Escherichia coli (3)
	Escherichia coli K-12 (3)
	Agrobacterium tumefaciens (2)
	Bacillus cereus ATCC 14579 (2)
	Oryctolagus cuniculus (2)

More...

Taxonomy

	Eukaryota (78)
	Bacteria (14)
	Riboviria (3)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (44)
	ELECTRON MICROSCOPY (41)
	SOLUTION NMR (8)

Polymer Entity Type

Protein (93)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (12)
	2.0 - 2.5 (23)
	2.5 - 3.0 (28)
	3.0 - 3.5 (18)
	3.5 - 4.0 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (9)
	2010 - 2014 (9)
	2015 - 2019 (13)
	2020 - 2024 (51)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (14)
	Isomerases (10)
	Transferases (5)
	Lyases (6)

Membrane Protein Annotation

	mpstruc (33)
	OPM (22)
	PDBTM (18)
	MemProtMD (1)

Symmetry Type

	Cyclic (43)
	Asymmetric (37)
	Dihedral (14)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (8)
	Artifacts (5)
	Peptides (4)
	All alpha proteins (2)

AllSelected

1 to 25 of 93 Structures

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1NW4 \| pdb_00001nw4	Download File View File

Crystal Structure of Plasmodium falciparum Purine Nucleoside Phosphorylase in complex with ImmH and Sulfate

Shi, W., Ting, L.M., Kicska, G.A., Lewandowicz, A., Tyler, P.C., Evans, G.B., Furneaux, R.H., Kim, K., Almo, S.C., Schramm, V.L.

(2004) J Biological Chem 279: 18103-18106

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	uridine phosphorylase, putative (protein)
Unique Ligands	IMH, IPA, SO4

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1Q1G \| pdb_00001q1g	Download File View File

Crystal structure of Plasmodium falciparum PNP with 5'-methylthio-immucillin-H

Shi, W., Ting, L.M., Kicska, G.A., Lewandowicz, A., Tyler, P.C., Evans, G.B., Furneaux, R.H., Kim, K., Almo, S.C., Schramm, V.L.

(2004) J Biological Chem 279: 18103-18106

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Uridine phosphorylase putative (protein)
Unique Ligands	IPA, MTI, SO4

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1T51 \| pdb_00001t51	Download File View File

Antibiotic Activity and Structural Analysis of a Scorpion-derived Antimicrobial peptide IsCT and Its Analogs

Lee, K., Shin, S.Y., Kim, K., Lim, S.S., Hahm, K.S., Kim, Y.

(2004) Biochem Biophys Res Commun 323: 712-719

Released	2004-10-19
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	Cytotoxic linear peptide IsCT (protein)

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1T52 \| pdb_00001t52	Download File View File

Antibiotic Activity and Structural Analysis of a Scorpion-derived Antimicrobial peptide IsCT and Its Analogs

Lee, K., Shin, S.Y., Kim, K., Lim, S.S., Hahm, K.S., Kim, Y.

(2004) Biochem Biophys Res Commun 323: 712-719

Released	2004-10-19
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	Cytotoxic linear peptide IsCT (protein)

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1T54 \| pdb_00001t54	Download File View File

Antibiotic Activity and Structural Analysis of a Scorpion-derived Antimicrobial peptide IsCT and Its Analogs

Lee, K., Shin, S.Y., Kim, K., Lim, S.S., Hahm, K.S., Kim, Y.

(2004) Biochem Biophys Res Commun 323: 712-719

Released	2004-10-19
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	Cytotoxic linear peptide IsCT (protein)

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1T55 \| pdb_00001t55	Download File View File

Antibiotic Activity and Structural Analysis of a Scorpion-derived Antimicrobial peptide IsCT and Its Analogs

Lee, K., Shin, S.Y., Kim, K., Lim, S.S., Hahm, K.S., Kim, Y.

(2004) Biochem Biophys Res Commun 323: 712-719

Released	2004-10-19
Method	SOLUTION NMR
Organisms	Opisthacanthus madagascariensis
Macromolecule	Cytotoxic linear peptide IsCT (protein)

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2E2E \| pdb_00002e2e	Download File View File

TPR domain of NrfG mediates the complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia Coli O157:H7

Han, D., Kim, K., Oh, J., Park, J., Kim, Y.

(2008) Proteins 70: 900-914

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	Formate-dependent nitrite reductase complex nrfG subunit (protein)
Unique Ligands	BME, IMD

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2FI7 \| pdb_00002fi7	Download File View File

Crystal Structure of PilF : Functional implication in the type 4 pilus biogenesis in Pseudomonas aeruginosa

Kim, K.

(2006) Biochem Biophys Res Commun 340: 1028-1038

Released	2006-06-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	type 4 fimbrial biogenesis protein PilF (protein)

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2HK0 \| pdb_00002hk0	Download File View File

Crystal structure of D-psicose 3-epimerase (DPEase) in the absence of substrate

Kim, K., Kim, H.J., Oh, D.K., Cha, S.S., Rhee, S.

(2006) J Mol Biology 361: 920-931

Released	2006-08-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	D-PSICOSE 3-EPIMERASE (protein)

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2HK1 \| pdb_00002hk1	Download File View File

Crystal structure of D-psicose 3-epimerase (DPEase) in the presence of D-fructose

Kim, K., Kim, H.J., Oh, D.K., Cha, S.S., Rhee, S.

(2006) J Mol Biology 361: 920-931

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	D-PSICOSE 3-EPIMERASE (protein)
Unique Ligands	FUD, MN

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2KXX \| pdb_00002kxx	Download File View File

NMR Structure of Escherichia coli BamE, a Lipoprotein Component of the beta-Barrel Assembly Machinery Complex

Kim, K., Okon, M., Escobar, E., Kang, H., McIntosh, L., Paetzel, M.

(2011) Biochemistry 50: 1081-1090

Released	2011-01-12
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Small protein A (protein)

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2L4M \| pdb_00002l4m	Download File View File

Solution structure of the Zbeta domain of human DAI and its binding modes to B- and Z-DNA

Kim, K., Khayrutdinov, B.I., Jeon, Y.H., Kim, K.K.

(2011) Proc Natl Acad Sci U S A

Released	2011-04-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein (protein)

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2LJP \| pdb_00002ljp	Download File View File

Backbone 1H, 13C, and 15N Chemical Shift Assignments for E.coli Ribonuclease P protein

Shin, J., Kim, K., Ryu, K., Han, K., Lee, Y., Choi, B.

To be published

Released	2011-12-07
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Ribonuclease P protein component (protein)

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2PL2 \| pdb_00002pl2	Download File View File

Crystal structure of TTC0263: a thermophilic TPR protein in Thermus thermophilus HB27

Lim, H., Kim, K., Han, D., Oh, J.

(2007) Mol Cell 24: 27-36

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	Hypothetical conserved protein TTC0263 (protein)

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2Q37 \| pdb_00002q37	Download File View File

Crystal structure of OHCU decarboxylase in the presence of (S)-allantoin

Kim, K.

(2007) J Biological Chem 282: 23457-23464

Released	2007-06-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	OHCU decarboxylase (protein)
Unique Ligands	3AL

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2Q7F \| pdb_00002q7f	Download File View File

Crystal structure of YrrB: a TPR protein with an unusual peptide-binding site

Oh, J., Han, D., Kim, K., Lim, H.

(2007) Biochem Biophys Res Commun 360: 784-790

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Bacillus subtilis
Macromolecule	YrrB protein (protein)

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2RVC \| pdb_00002rvc	Download File View File

Solution structure of Zalpha domain of goldfish ZBP-containing protein kinase

Lee, A., Park, C., Park, J., Kwon, M., Choi, Y., Kim, K., Choi, B., Lee, J.

(2016) Nucleic Acids Res 44: 2936-2948

Released	2016-02-03
Method	SOLUTION NMR
Organisms	Carassius auratus
Macromolecule	Interferon-inducible and double-stranded-dependent eIF-2kinase (protein)

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3E74 \| pdb_00003e74	Download File View File

Crystal structure of E. coli allantoinase with iron ions at the metal center

Kim, K.

(2009) J Mol Biology 387: 1067-1074

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Allantoinase (protein)
Unique Ligands	FE

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3FFL \| pdb_00003ffl	Download File View File

Crystal Structure of the N-terminal Domain of Anaphase-Promoting Complex Subunit 7

Han, D., Kim, K., Kim, Y., Kim, Y.

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Anaphase-promoting complex subunit 7 (protein)

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4QLQ \| pdb_00004qlq	Download File View File

yCP in complex with tripeptidic epoxyketone inhibitor 8

De Bruin, G., Huber, E., Xin, B., Van Rooden, E., Al-Ayed, K., Kim, K., Kisselev, A., Driessen, C., Van der Marel, G., Groll, M., Overkleeft, H.

(2014) J Med Chem 57: 6197-6209

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	38N, MES, MG

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4QLS \| pdb_00004qls	Download File View File

yCP in complex with tripeptidic epoxyketone inhibitor 11

De Bruin, G., Huber, E., Xin, B., Van Rooden, E., Al-Ayed, K., Kim, K., Kisselev, A., Driessen, C., Van der Marel, G., Groll, M., Overkleeft, H.

(2014) J Med Chem 57: 6197-6209

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	37Y, MES, MG

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4QLT \| pdb_00004qlt	Download File View File

yCP in complex with tripeptidic epoxyketone inhibitor 2 (PR924)

de Bruin, G., Huber, E., Xin, B., van Rooden, E., Al-Ayed, K., Kim, K., Kisselev, A., Driessen, C., van der Marel, G., Groll, M., Overkleeft, H.

(2014) J Med Chem 57: 6197-6209

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	39V, MES, MG

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4QLU \| pdb_00004qlu	Download File View File

yCP in complex with tripeptidic epoxyketone inhibitor 9

de Bruin, G., Huber, E., Xin, B., van Rooden, E., Al-Ayed, K., Kim, K., Kisselev, A., Driessen, C., van der Marel, G., Groll, M., Overkleeft, H.

(2014) J Med Chem 57: 6197-6209

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	38X, MES, MG

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4QLV \| pdb_00004qlv	Download File View File

yCP in complex with tripeptidic epoxyketone inhibitor 17

de Bruin, G., Huber, E., Xin, B., van Rooden, E., Al-Ayed, K., Kim, K., Kisselev, A., Driessen, C., van der Marel, G., Groll, M., Overkleeft, H.

(2014) J Med Chem 57: 6197-6209

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	39Q, MES, MG

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4R3P \| pdb_00004r3p	Download File View File

Crystal structures of EGFR in complex with Mig6

Park, E., Kim, N., Yi, Z., Cho, A., Kim, K., Ficarro, S.B., Park, A., Park, W.Y., Murray, B., Meyerson, M., Beroukim, R., Marto, J.A., Cho, J., Eck, M.J.

(2015) Nat Struct Mol Biol 22: 703-711

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.905 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein) peptide from ERBB receptor feedback inhibitor 1 (protein)

1 to 25 of 93 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1NW4 | pdb_00001nw4

1Q1G | pdb_00001q1g

1T51 | pdb_00001t51

1T52 | pdb_00001t52

1T54 | pdb_00001t54

1T55 | pdb_00001t55

2E2E | pdb_00002e2e

2FI7 | pdb_00002fi7

2HK0 | pdb_00002hk0

2HK1 | pdb_00002hk1

2KXX | pdb_00002kxx

2L4M | pdb_00002l4m

2LJP | pdb_00002ljp

2PL2 | pdb_00002pl2

2Q37 | pdb_00002q37

2Q7F | pdb_00002q7f

2RVC | pdb_00002rvc

3E74 | pdb_00003e74

3FFL | pdb_00003ffl

4QLQ | pdb_00004qlq

4QLS | pdb_00004qls

4QLT | pdb_00004qlt

4QLU | pdb_00004qlu

4QLV | pdb_00004qlv

4R3P | pdb_00004r3p