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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Liu, J."

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Search Summary

This query matches 879 Structures.

Refinements

Structure Determination Methodology

experimental (879)

Scientific Name of Source Organism

	Homo sapiens (294)
	Mus musculus (28)
	Bacillus subtilis (23)
	Escherichia coli (23)
	Severe acute respiratory syndrome coronavirus 2 (22)
	Influenza A virus (20)
	Saccharomyces cerevisiae (15)
	Trypanosoma brucei (15)
	synthetic construct (14)
	Influenza A virus (A/Vietnam/1194/2004(H5N1)) (13)

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Taxonomy

	Eukaryota (443)
	Bacteria (301)
	Riboviria (178)
	Archaea (30)
	other sequences (15)
	Duplodnaviria (8)
	Eukaryota (eukaryotes) (2)
	Monodnaviria (2)
	Riboviria (RNA viruses and viroids) (2)

Experimental Method

	X-RAY DIFFRACTION (684)
	SOLUTION NMR (106)
	ELECTRON MICROSCOPY (85)
	ELECTRON CRYSTALLOGRAPHY (2)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (872)
	DNA (18)
	RNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (24)
	1.5 - 2.0 (192)
	2.0 - 2.5 (255)
	2.5 - 3.0 (188)
	3.0 - 3.5 (66)
	3.5 - 4.0 (12)
	4.0 - 4.5 (3)
	> 4.5 (21)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (57)
	2005 - 2009 (280)
	2010 - 2014 (188)
	2015 - 2019 (146)
	2020 - 2024 (184)
	2025 - 2029 (18)

Enzyme Classification Name

	Transferases (135)
	Hydrolases (128)
	Oxidoreductases (48)
	Ligases (21)
	Translocases (9)
	Lyases (8)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (49)
	OPM (44)
	mpstruc (41)
	MemProtMD (29)

Symmetry Type

	Asymmetric (530)
	Cyclic (328)
	Dihedral (37)
	Helical (14)
	Octahedral (1)

SCOP Classification

	All beta proteins (165)
	Artifacts (132)
	Alpha and beta proteins (a/b) (105)
	Coiled coil proteins (73)
	Alpha and beta proteins (a+b) (82)
	All alpha proteins (72)
	Membrane and cell surface proteins and peptides (16)
	Multi-domain proteins (alpha and beta) (9)
	Designed proteins (1)
	Small proteins (4)

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1 to 25 of 879 Structures

Page 1 of 36

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1AIL \| pdb_00001ail	Download File View File

N-TERMINAL FRAGMENT OF NS1 PROTEIN FROM INFLUENZA A VIRUS

Liu, J., Lynch, P.A., Chien, C., Montelione, G.T., Krug, R.M., Berman, H.M.

(1997) Nat Struct Biol 4: 896-899

Released	1997-10-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/Udorn/307/1972(H3N2))
Macromolecule	NONSTRUCTURAL PROTEIN NS1 (protein)

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1DLB \| pdb_00001dlb	Download File View File

HELICAL INTERACTIONS IN THE HIV-1 GP41 CORE REVEALS STRUCTURAL BASIS FOR THE INHIBITORY ACTIVITY OF GP41 PEPTIDES

Shu, W., Liu, J., Ji, H., Rading, L., Jiang, S., Lu, M.

(2000) Biochemistry 39: 1634-1642

Released	1999-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 ENVELOPE GLYCOPROTEIN GP41 (protein)

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1EI8 \| pdb_00001ei8	Download File View File

STRUCTURAL CONSEQUENCES OF A DISCONTINUITY IN THE REPEATING TRIPEPTIDE SEQUENCE OF A COLLAGEN-LIKE TRIPLE-HELICAL PEPTIDE

Berman, H.M., Liu, J.

(2006) J Mol Biology 362: 298-311

Released	2003-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	COLLAGEN-LIKE PEPTIDE (PRO-HYP-GLY)4-PG-(PRO-HYP-GLY)5 (protein)

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1EQ7 \| pdb_00001eq7	Download File View File

CORE STRUCTURE OF THE OUTER MEMBRANE LIPOPROTEIN FROM ESCHERICHIA COLI AT 1.9 ANGSTROM RESOLUTION

Shu, W., Liu, J., Ji, H., Lu, M.

(2000) J Mol Biology 299: 1101-1112

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	OUTER MEMBRANE LIPOPROTEIN (protein)

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1F23 \| pdb_00001f23	Download File View File

CONTRIBUTION OF A BURIED HYDROGEN BOND TO HIV-1 ENVELOPE GLYCOPROTEIN STRUCTURE AND FUNCTION

Liu, J., Shu, W., Fagan, M., Nunberg, J.H., Lu, M.

(2001) Biochemistry 40: 2797-2807

Released	2001-06-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (protein)

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1FNN \| pdb_00001fnn	Download File View File

CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM

Liu, J., Smith, C.L., DeRyckere, D., DeAngelis, K., Martin, G.S., Berger, J.M.

(2000) Mol Cell 6: 637-648

Released	2000-10-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	CELL DIVISION CONTROL PROTEIN 6 (protein)
Unique Ligands	ADP, MG

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1HUO \| pdb_00001huo	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPC)-3' (nucleic acid)
Unique Ligands	CR, TTE

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1HUZ \| pdb_00001huz	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPCP*T)-3' (nucleic acid)
Unique Ligands	CR, MDN

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1I5X \| pdb_00001i5x	Download File View File

HIV-1 GP41 CORE

Liu, J., Lu, M.

(2001) J Virol 75: 11146-11156

Released	2002-09-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (GP41) (protein)
Unique Ligands	SO4

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1I5Y \| pdb_00001i5y	Download File View File

HIV-1 GP41 CORE

Liu, J., Lu, M.

(2001) J Virol 75: 11146-11156

Released	2002-09-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (GP41) (protein)
Unique Ligands	SO4

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1IG3 \| pdb_00001ig3	Download File View File

Mouse Thiamin Pyrophosphokinase Complexed with Thiamin

Timm, D.E., Liu, J., Baker, L.-J., Harris, R.A.

(2001) J Mol Biology 310: 195-204

Released	2001-04-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	thiamin pyrophosphokinase (protein)
Unique Ligands	SO4, VIB

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1IMX \| pdb_00001imx	Download File View File

1.8 Angstrom crystal structure of IGF-1

Vajdos, F.F., Ultsch, M., Schaffer, M.L., Deshayes, K.D., Liu, J., Skelton, N.J., de Vos, A.M.

(2001) Biochemistry 40: 11022-11029

Released	2001-09-05
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Insulin-like Growth Factor 1A (protein)
Unique Ligands	BR, CPQ

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1J4J \| pdb_00001j4j	Download File View File

Crystal Structure of Tabtoxin Resistance Protein (form II) complexed with an Acyl Coenzyme A

He, H., Ding, Y., Bartlam, M., Zhang, R., Duke, N., Joachimiak, A., Shao, Y., Cao, Z., Tang, H., Liu, Y., Jiang, F., Liu, J., Zhao, N., Rao, Z.

(2003) J Mol Biology 325: 1019-1030

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pseudomonas amygdali pv. tabaci
Macromolecule	TABTOXIN RESISTANCE PROTEIN (protein)
Unique Ligands	ACO

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1JCC \| pdb_00001jcc	Download File View File

Crystal Structure of a Novel Alanine-Zipper Trimer at 1.7 A Resolution, V13A,L16A,V20A,L23A,V27A,M30A,V34A mutations

Liu, J., Dai, J., Lu, M.

(2003) Biochemistry 42: 5657-5664

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)
Unique Ligands	ZN

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1JCD \| pdb_00001jcd	Download File View File

Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations

Liu, J., Lu, M.

(2002) J Biological Chem 277: 48708-48713

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)

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1JPX \| pdb_00001jpx	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Wild type.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biological Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein (protein)

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1JQ0 \| pdb_00001jq0	Download File View File

Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Mutant structure.

Liu, J., Wang, S., LaBranche, C.C., Hoxie, J.A., Lu, M.

(2002) J Biological Chem 277: 12891-12900

Released	2002-04-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Simian immunodeficiency virus
Macromolecule	gp41 envelope protein (protein)

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1KFM \| pdb_00001kfm	Download File View File

Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants

Liu, J., Cao, W., Lu, M.

(2002) J Mol Biology 318: 877-888

Released	2002-06-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)

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1KFN \| pdb_00001kfn	Download File View File

Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants

Liu, J., Cao, W., Lu, M.

(2002) J Mol Biology 318: 877-888

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	MAJOR OUTER MEMBRANE LIPOPROTEIN (protein)

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1LB2 \| pdb_00001lb2	Download File View File

Structure of the E. coli alpha C-terminal domain of RNA polymerase in complex with CAP and DNA

Benoff, B., Yang, H., Lawson, C.L., Parkinson, G., Liu, J., Blatter, E., Ebright, Y.W., Berman, H.M., Ebright, R.H.

(2002) Science 297: 1562-1566

Released	2002-09-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	CATABOLITE GENE ACTIVATOR PROTEIN (protein) DNA-directed RNA polymerase alpha chain (protein) 5'-D(CPTPAPGPAPTPCPAPCPAPTPTPTPTPAPGPGPAPAPAPAPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPTPTPTPTPCPCPTPAPAPAPAPTPGPTPGPAPT)-3' (nucleic acid)
Unique Ligands	CMP

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1LSL \| pdb_00001lsl	Download File View File

Crystal Structure of the Thrombospondin-1 Type 1 Repeats

Tan, K., Duquette, M., Liu, J., Dong, Y., Zhang, R., Joachimiak, A., Lawler, J., Wang, J.-H.

(2002) J Cell Biol 159: 373-382

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Thrombospondin 1 (protein)
Unique Ligands	FUC, FUL

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1MIT \| pdb_00001mit	Download File View File

RECOMBINANT CUCURBITA MAXIMA TRYPSIN INHIBITOR V (RCMTI-V) (NMR, MINIMIZED AVERAGE STRUCTURE)

Cai, M., Gong, Y., Huang, Y., Liu, J., Prakash, O., Wen, L., Wen, J.J., Huang, J.-K., Krishnamoorthi, R.

(1996) Biochemistry 35: 1516-1524

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Cucurbita maxima
Macromolecule	TRYPSIN INHIBITOR V (protein)

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1N6H \| pdb_00001n6h	Download File View File

Crystal Structure of Human Rab5a

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GNP, MG

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1N6I \| pdb_00001n6i	Download File View File

Crystal Structure of Human Rab5a A30P mutant Complex with GDP

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	BME, GDP, MG

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1N6K \| pdb_00001n6k	Download File View File

Crystal Structure of Human Rab5a A30P mutant complex with GDP and aluminum fluoride

Zhu, G., Liu, J., Terzyan, S., Zhai, P., Li, G., Zhang, X.C.

(2003) J Biological Chem 278: 2452-2460

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-5A (protein)
Unique Ligands	AF3, BME, GDP, MG

1 to 25 of 879 Structures

Page 1 of 36

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AIL | pdb_00001ail

1DLB | pdb_00001dlb

1EI8 | pdb_00001ei8

1EQ7 | pdb_00001eq7

1F23 | pdb_00001f23

1FNN | pdb_00001fnn

1HUO | pdb_00001huo

1HUZ | pdb_00001huz

1I5X | pdb_00001i5x

1I5Y | pdb_00001i5y

1IG3 | pdb_00001ig3

1IMX | pdb_00001imx

1J4J | pdb_00001j4j

1JCC | pdb_00001jcc

1JCD | pdb_00001jcd

1JPX | pdb_00001jpx

1JQ0 | pdb_00001jq0

1KFM | pdb_00001kfm

1KFN | pdb_00001kfn

1LB2 | pdb_00001lb2

1LSL | pdb_00001lsl

1MIT | pdb_00001mit

1N6H | pdb_00001n6h

1N6I | pdb_00001n6i

1N6K | pdb_00001n6k