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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Liu, M."

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Search Summary

This query matches 111 Structures.

Refinements

Structure Determination Methodology

experimental (111)

Scientific Name of Source Organism

	Homo sapiens (52)
	synthetic construct (11)
	Severe acute respiratory syndrome coronavirus 2 (8)
	Orbilia oligospora ATCC 24927 (6)
	Saccharomyces cerevisiae S288C (5)
	unidentified (5)
	Fagopyrum esculentum (3)
	Sus scrofa (3)
	Variovorax paradoxus (3)
	Candida albicans SC5314 (2)

More...

Taxonomy

	Eukaryota (75)
	Bacteria (17)
	other sequences (11)
	Riboviria (8)
	unclassified sequences (5)
	Duplodnaviria (3)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (81)
	SOLUTION NMR (18)
	ELECTRON MICROSCOPY (11)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (111)
	DNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (21)
	2.0 - 2.5 (31)
	2.5 - 3.0 (22)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	4.0 - 4.5 (2)
	> 4.5 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (37)
	2015 - 2019 (39)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (44)
	Transferases (22)
	Lyases (10)
	Oxidoreductases (6)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (4)
	MemProtMD (3)
	OPM (2)
	mpstruc (1)

Symmetry Type

	Asymmetric (82)
	Cyclic (24)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	Alpha and beta proteins (a+b) (11)
	Artifacts (17)
	All alpha proteins (8)
	Membrane and cell surface proteins and peptides (2)
	All beta proteins (3)
	Small proteins (2)

AllSelected

1 to 25 of 111 Structures

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1DKI \| pdb_00001dki	Download File View File

CRYSTAL STRUCTURE OF THE ZYMOGEN FORM OF STREPTOCOCCAL PYROGENIC EXOTOXIN B ACTIVE SITE (C47S) MUTANT

Kagawa, T.F., Cooney, J.C., Baker, H.M., McSweeney, S., Liu, M., Gubba, S., Musser, J.M., Baker, E.N.

(2000) Proc Natl Acad Sci U S A 97: 2235-2240

Released	2000-03-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pyogenes
Macromolecule	PYROGENIC EXOTOXIN B ZYMOGEN (protein)
Unique Ligands	SO4

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2AU1 \| pdb_00002au1	Download File View File

Crystal Structure of group A Streptococcus MAC-1 orthorhombic form

Agniswamy, J., Nagiec, M.J., Liu, M., Schuck, P., Musser, J.M., Sun, P.D.

(2006) Structure 14: 225-235

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus pyogenes MGAS5005
Macromolecule	IgG-degrading protease (protein)
Unique Ligands	BME

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2AVW \| pdb_00002avw	Download File View File

Crystal structure of monoclinic form of streptococcus Mac-1

Agniswamy, J., Nagiec, M.J., Liu, M., Schuck, P., Musser, J.M., Sun, P.D.

(2006) Structure 14: 225-235

Released	2006-02-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pyogenes MGAS5005
Macromolecule	IgG-degrading protease (protein)
Unique Ligands	GOL, SO4

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2H67 \| pdb_00002h67	Download File View File

NMR structure of human insulin mutant HIS-B5-ALA, HIS-B10-ASP PRO-B28-LYS, LYS-B29-PRO, 20 structures

Hua, Q.X., Liu, M., Hu, S.Q., Jia, W., Arvan, P., Weiss, M.A.

(2006) J Biological Chem 281: 24889-24899

Released	2006-07-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)

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2LHV \| pdb_00002lhv	Download File View File

Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Macromolecule	MUC2 Mucin Domain Peptide (protein)

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2LHW \| pdb_00002lhw	Download File View File

Tri-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHX \| pdb_00002lhx	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHY \| pdb_00002lhy	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHZ \| pdb_00002lhz	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI0 \| pdb_00002li0	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI1 \| pdb_00002li1	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

Explore in 3D

2LI2 \| pdb_00002li2	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LIR \| pdb_00002lir	Download File View File

NMR Solution Structure of Yeast Iso-1-cytochrome c Mutant P71H in oxidized states

Lan, W., Wang, Z., Yang, Z., Zhu, J., Ying, T., Jiang, X., Zhang, X., Wu, H., Liu, M., Tan, X., Cao, C., Huang, Z.X.

(2011) PLoS One 6: e27219-e27219

Released	2011-12-07
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cytochrome c iso-1 (protein)
Unique Ligands	HEC

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2LIT \| pdb_00002lit	Download File View File

NMR Solution Structure of Yeast Iso-1-cytochrome c Mutant P71H in reduced states

Lan, W., Wang, Z., Yang, Z., Zhu, J., Ying, T., Jiang, X., Zhang, X., Wu, H., Liu, M., Tan, X., Cao, C., Huang, Z.X.

(2011) PLoS One 6: e27219-e27219

Released	2011-12-07
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cytochrome c iso-1 (protein)
Unique Ligands	HEC

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2LMC \| pdb_00002lmc	Download File View File

Structure of T7 transcription factor Gp2-E. coli RNAp jaw domain complex

Liu, M.

(2012) Mol Cell 47: 755-766

Released	2012-03-14
Method	SOLUTION NMR
Organisms	Escherichia coli K-12 Escherichia phage T7
Macromolecule	Bacterial RNA polymerase inhibitor (protein) DNA-directed RNA polymerase subunit beta (protein)

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2LUH \| pdb_00002luh	Download File View File

NMR structure of the Vta1-Vps60 complex

Yang, Z., Vild, C., Ju, J., Zhang, X., Liu, J., Shen, J., Zhao, B., Lan, W., Gong, F., Liu, M., Cao, C., Xu, Z.

(2012) J Biological Chem 287: 43899-43908

Released	2012-11-07
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Vacuolar protein sorting-associated protein VTA1 (protein) Vacuolar protein-sorting-associated protein 60 (protein)

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2LW6 \| pdb_00002lw6	Download File View File

Solution structure of an avirulence protein AvrPiz-t from pathogen Magnaportheoryzae

Zhang, Z.-M., Zhang, X., Zhou, Z., Hu, H., Liu, M., Zhou, B., Zhou, J.

(2013) J Biomol NMR 55: 219-223

Released	2012-09-12
Method	SOLUTION NMR
Organisms	Pyricularia oryzae
Macromolecule	AvrPiz-t protein (protein)

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2M01 \| pdb_00002m01	Download File View File

Solution structure of Kunitz-type neurotoxin LmKKT-1a from scorpion venom

Luo, F., Jiang, L., Liu, M., Chen, Z., Wu, Y.

(2013) PLoS One 8: e60201-e60201

Released	2013-11-13
Method	SOLUTION NMR
Organisms	Lychas mucronatus
Macromolecule	Protease inhibitor LmKTT-1a (protein)

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2WNM \| pdb_00002wnm	Download File View File

Solution structure of Gp2

Camara, B., Liu, M., Shadrinc, A., Liu, B., Simpson, P., Weinzierl, R., Severinovc, K., Cota, E., Matthews, S., Wigneshweraraj, S.R.

(2010) Proc Natl Acad Sci U S A 107: 2247

Released	2010-02-16
Method	SOLUTION NMR
Organisms	Escherichia phage T7
Macromolecule	GENE 2 (protein)

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3GKY \| pdb_00003gky	Download File View File

The Structural Basis of an ER Stress-Associated Bottleneck in a Protein Folding Landscape

Liu, M., Wan, Z.L., Chu, Y.C., Alddin, H., Klaproth, B., Weiss, M.A.

(2009) J Biological Chem 284: 35259-35272

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)
Unique Ligands	CL, IPH, ZN

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3JSD \| pdb_00003jsd	Download File View File

Insulin's biosynthesis and activity have opposing structural requirements: a new factor in neonatal diabetes mellitus

Weiss, M.A., Wan, Z.L., Dodson, E.J., Liu, M., Xu, B., Hua, Q.X., Turkenburg, M., Whittingham, J., Nakagawa, S.H., Huang, K., Hu, S.Q., Jia, W.H., Wang, S.H., Brange, J., Whittaker, J., Arvan, P., Katsoyannis, P.G., Dodson, G.G.

To be published

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)
Unique Ligands	CL, IPH, ZN

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3KH2 \| pdb_00003kh2	Download File View File

Crystal structure of the P1 bacteriophage Doc toxin (F68S) in complex with the Phd antitoxin (L17M/V39A). Northeast Structural Genomics targets ER385-ER386

Arbing, M.A., Kuzin, A.P., Su, M., Abashidze, M., Verdon, G., Liu, M., Xiao, R., Acton, T., Inouye, M., Montelione, G.T., Woychik, N.A., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

(2010) Structure 18: 996-1010

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Punavirus P1
Macromolecule	Death on curing protein (protein) Prevent host death protein (protein)
Unique Ligands	CL, GOL, HED, PO4

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3KLU \| pdb_00003klu	Download File View File

Crystal structure of the protein yqbn. northeast structural genomics consortium target sr445.

Kuzin, A.P., Su, M., Seetharaman, J., Wang, D., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, M., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Uncharacterized protein yqbN (protein)
Unique Ligands	MN

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3QI3 \| pdb_00003qi3	Download File View File

Crystal structure of PDE9A(Q453E) in complex with inhibitor BAY73-6691

Hou, J., Xu, J., Liu, M., Zhao, R., Lou, H., Ke, H.

(2011) PLoS One 6: e18092-e18092

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A (protein)
Unique Ligands	MG, PDB, ZN

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3QI4 \| pdb_00003qi4	Download File View File

Crystal structure of PDE9A(Q453E) in complex with IBMX

Hou, J., Xu, J., Liu, M., Zhao, R., Lou, H., Ke, H.

(2011) PLoS One 6: e18092-e18092

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A (protein)
Unique Ligands	IBM, MG, ZN

1 to 25 of 111 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DKI | pdb_00001dki

2AU1 | pdb_00002au1

2AVW | pdb_00002avw

2H67 | pdb_00002h67

2LHV | pdb_00002lhv

2LHW | pdb_00002lhw

2LHX | pdb_00002lhx

2LHY | pdb_00002lhy

2LHZ | pdb_00002lhz

2LI0 | pdb_00002li0

2LI1 | pdb_00002li1

2LI2 | pdb_00002li2

2LIR | pdb_00002lir

2LIT | pdb_00002lit

2LMC | pdb_00002lmc

2LUH | pdb_00002luh

2LW6 | pdb_00002lw6

2M01 | pdb_00002m01

2WNM | pdb_00002wnm

3GKY | pdb_00003gky

3JSD | pdb_00003jsd

3KH2 | pdb_00003kh2

3KLU | pdb_00003klu

3QI3 | pdb_00003qi3

3QI4 | pdb_00003qi4