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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Logan, D."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (9)
	Streptococcus agalactiae serogroup III (3)
	Acinetobacter baumannii (1)
	Bacillus subtilis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (9)
	Bacteria (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

	Oxidoreductases (5)
	Transferases (1)

Symmetry Type

	Asymmetric (8)
	Cyclic (6)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 14 of 14 Structures

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2VT3 \| pdb_00002vt3	Download File View File

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

Wang, E., Bauer, M.C., Rogstam, A., Linse, S., Logan, D., von Wachenfeldt, C.

(2008) Mol Microbiol 69: 466-478

Released	2008-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX (protein)
Unique Ligands	ATP

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3KEO \| pdb_00003keo	Download File View File

Crystal Structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus agalactiae serogroup III
Macromolecule	Redox-sensing transcriptional repressor rex (protein)
Unique Ligands	CL, MG, NAD

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3KEQ \| pdb_00003keq	Download File View File

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus agalactiae serogroup III
Macromolecule	Redox-sensing transcriptional repressor rex (protein)
Unique Ligands	NAD

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3KET \| pdb_00003ket	Download File View File

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus agalactiae serogroup III synthetic construct
Macromolecule	Redox-sensing transcriptional repressor rex (protein) DNA (5'-D(APAPTPTPGPTPGPAPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPTPTPCPAPCPAPAPTPT)-3') (nucleic acid)
Unique Ligands	MG, NAD

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4BFC \| pdb_00004bfc	Download File View File

Crystal structure of the C-terminal CMP-Kdo binding domain of WaaA from Acinetobacter baumannii

Kimbung, Y.R., Hakansson, M., Logan, D., Wang, P.F., Schulz, M., Mamat, U., Woodard, R.W.

To be published

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Acinetobacter baumannii
Macromolecule	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE (protein)
Unique Ligands	BME, SO4

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5J07 \| pdb_00005j07	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P1/2

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn] (protein)

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5J0C \| pdb_00005j0c	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P2/3

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn],OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] (protein)

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5J0F \| pdb_00005j0f	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P4/5

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn],OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	GOL

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5J0G \| pdb_00005j0g	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P7/8

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] (protein)

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6FLH \| pdb_00006flh	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, SOD1 7+7, apo form

Wang, H., Yang, F., Logan, D., Oliveberg, M.

(2018) J Am Chem Soc 140: 16570-16579

Released	2018-11-07
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	GOL, SO4

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7AMA \| pdb_00007ama	Download File View File

IL-17A in complex with small molecule modulators

Hakansson, M., Kimbung, R., Logan, D., Walse, U.B., de Groot, M.J., Andrews, M.D., Dack, K.N., Lambert, M.

(2022) J Med Chem 65: 8828-8842

Released	2022-04-20
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-17A (protein)
Unique Ligands	RMK

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7AMG \| pdb_00007amg	Download File View File

IL-17A in complex with small molecule modulators

Hakansson, M., Kimbung, R., Logan, D., Walse, U.B., de Groot, M.J., Andrews, M.D., Dack, K.N., Lambert, M.

(2022) J Med Chem 65: 8828-8842

Released	2022-04-20
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-17A (protein)
Unique Ligands	RMQ

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7ZXK \| pdb_00007zxk	Download File View File

Human IL-27 in complex with neutralizing SRF388 FAb fragment

Bloch, Y., Skladanowska, K., Strand, J., Welin, M., Logan, D., Hill, J., Savvides, S.N.

(2022) Cell Rep 41: 111490-111490

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-27 subunit alpha (protein) Interleukin-27 subunit beta (protein) SRF388 Heavy Chain (protein) SRF388 Light Chain (protein)
Unique Ligands	NAG

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8P4Z \| pdb_00008p4z	Download File View File

Crystal structure of the human CDK7 kinase domain in complex with LDC4297

Laursen, M., Caing-Carlsson, R., Houssari, R., Javadi, A., Kimbung, Y.R., Murina, V., Orozco-Rodriguez, J.M., Svensson, A., Welin, M., Logan, D., Svensson, B., Walse, B.

To be published

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 7 (protein)
Unique Ligands	1PE, GOL, PGE, WZ8

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2VT3 | pdb_00002vt3

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

3KEO | pdb_00003keo

Crystal Structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

3KEQ | pdb_00003keq

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

3KET | pdb_00003ket

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator

4BFC | pdb_00004bfc

Crystal structure of the C-terminal CMP-Kdo binding domain of WaaA from Acinetobacter baumannii

5J07 | pdb_00005j07

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P1/2

5J0C | pdb_00005j0c

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P2/3

5J0F | pdb_00005j0f

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P4/5

5J0G | pdb_00005j0g

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P7/8

6FLH | pdb_00006flh

Monomeric Human Cu,Zn Superoxide dismutase, SOD1 7+7, apo form

7AMA | pdb_00007ama

IL-17A in complex with small molecule modulators

7AMG | pdb_00007amg

IL-17A in complex with small molecule modulators

7ZXK | pdb_00007zxk

Human IL-27 in complex with neutralizing SRF388 FAb fragment

8P4Z | pdb_00008p4z

Crystal structure of the human CDK7 kinase domain in complex with LDC4297

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2VT3 | pdb_00002vt3

3KEO | pdb_00003keo

3KEQ | pdb_00003keq

3KET | pdb_00003ket

4BFC | pdb_00004bfc

5J07 | pdb_00005j07

5J0C | pdb_00005j0c

5J0F | pdb_00005j0f

5J0G | pdb_00005j0g

6FLH | pdb_00006flh

7AMA | pdb_00007ama

7AMG | pdb_00007amg

7ZXK | pdb_00007zxk

8P4Z | pdb_00008p4z