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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lu, A."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (6)
	Clostridium botulinum (3)
	Okubovirus (3)
	Pseudomonas monteilii (3)
	Erwinia phage FBB1 (2)
	Lama glama (2)
	Aequorea victoria (1)
	Aspergillus oryzae (1)
	Bacillus phage BSP38 (1)
	Escherichia coli (1)

More...

Taxonomy

	Eukaryota (11)
	Bacteria (9)
	Duplodnaviria (6)

Experimental Method

	X-RAY DIFFRACTION (19)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (7)
	2020 - 2024 (14)

Enzyme Classification Name

Hydrolases (6)

Symmetry Type

	Asymmetric (11)
	Cyclic (9)
	Dihedral (3)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 26 Structures

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3J63 \| pdb_00003j63	Download File View File

Unified assembly mechanism of ASC-dependent inflammasomes

Lu, A., Magupalli, V.G., Ruan, J., Yin, Q., Atianand, M.K., Vos, M., Schroder, G.F., Fitzgerald, K.A., Wu, H., Egelman, E.H.

(2014) Cell 156: 1193-1206

Released	2014-03-26
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Apoptosis-associated speck-like protein containing a CARD (protein)

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3JBL \| pdb_00003jbl	Download File View File

Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization

Zhang, L., Chen, S., Ruan, J., Wu, J., Tong, A.B., Yin, Q., Li, Y., David, L., Lu, A., Wang, W.L., Marks, C., Ouyang, Q., Zhang, X., Mao, Y., Wu, H.

(2015) Science 350: 404-409

Released	2015-10-21
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Mus musculus
Macromolecule	NLR family CARD domain-containing protein 4 (protein)

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3QPA \| pdb_00003qpa	Download File View File

Structure of Fusarium Solani Cutinase expressed in Pichia pastoris

Lu, A., Gosser, Y., Montclare, J.K., Liu, Z., Kong, X.

To be published

Released	2012-02-29
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	Fusarium vanettenii 77-13-4
Macromolecule	Cutinase (protein)

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3QPC \| pdb_00003qpc	Download File View File

Structure of Fusarium Solani Cutinase expressed in Pichia pastoris, crystallized in the presence of Paraoxon

Lu, A., Gosser, Y., Montclare, J.K., Liu, Z., Kong, X.

To be published

Released	2012-02-29
Method	X-RAY DIFFRACTION 0.978 Å
Organisms	Fusarium solani
Macromolecule	Cutinase (protein)

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3QPD \| pdb_00003qpd	Download File View File

Structure of Aspergillus oryzae cutinase expressed in Pichia pastoris, crystallized in the presence of Paraoxon

Lu, A., Gosser, Y., Montclare, J.K., Liu, Z., Kong, X.

To be published

Released	2012-02-29
Method	X-RAY DIFFRACTION 1.571 Å
Organisms	Aspergillus oryzae
Macromolecule	Cutinase 1 (protein)

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4O7Q \| pdb_00004o7q	Download File View File

Crystal Structure of the F27G AIM2 Pyrin Domain Mutant and Similarities of its Self-association to DED/DED Interactions

Lu, A., Kabaleeswaran, V., Wu, H.

(2014) J Mol Biology 426: 1420-1427

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Interferon-inducible protein AIM2 (protein)

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5FNA \| pdb_00005fna	Download File View File

Cryo-EM reconstruction of caspase-1 CARD

Li, Y., Lu, A., Schmidt, F.I., Yin, Q., Chen, S., Fu, T.M., Tong, A.B., Ploegh, H.L., Mao, Y., Wu, H.

(2016) Nat Struct Mol Biol 23: 416

Released	2016-03-30
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens
Macromolecule	Caspase-1 (protein)

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5H8D \| pdb_00005h8d	Download File View File

Crystal structure of an ASC binding nanobody

Lu, A., Schmidt, F.I., Ruan, J., Tang, C., Wu, H., Ploegh, H.L.

(2016) J Exp Medicine 213: 771-790

Released	2016-04-06
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Lama glama
Macromolecule	VHH nanobody (protein)

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5H8O \| pdb_00005h8o	Download File View File

Crystal structure of an ASC-binding nanobody in complex with the CARD domain of ASC

Lu, A., Schmidt, F.I., Ruan, J., Tang, C., Wu, H., Ploegh, H.L.

(2016) J Exp Medicine 213: 771-790

Released	2016-04-06
Method	X-RAY DIFFRACTION 4.206 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Apoptosis-associated speck-like protein containing a CARD (protein) VHH nanobody (protein)

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5JQE \| pdb_00005jqe	Download File View File

Crystal structure of caspase8 tDED

Fu, T., Li, Y., Lu, A., Wu, H.

(2016) Mol Cell 64: 236-250

Released	2016-10-26
Method	X-RAY DIFFRACTION 3.157 Å
Organisms	Escherichia coli
Macromolecule	Sugar ABC transporter substrate-binding protein,Caspase-8 chimera (protein)

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5L08 \| pdb_00005l08	Download File View File

Cryo-EM structure of Casp-8 tDED filament

Fu, T.M., Li, Y., Lu, A., Wu, H.

(2016) Mol Cell 64: 236-250

Released	2016-11-02
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens
Macromolecule	Caspase-8 (protein)

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6MB2 \| pdb_00006mb2	Download File View File

Cryo-EM structure of the PYD filament of AIM2

Lu, A., Li, Y., Wu, H.

(2015) Cell Discov 1:

Released	2018-09-05
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Green fluorescent protein (protein) Interferon-inducible protein AIM2 (protein)

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7T26 \| pdb_00007t26	Download File View File

Structure of phage FBB1 anti-CBASS nuclease Acb1 in apo state

Hobbs, S.J., Wein, T., Lu, A., Morehouse, B.R., Schnabel, J., Sorek, R., Kranzusch, P.J.

(2022) Nature 605: 522-526

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Erwinia phage FBB1
Macromolecule	Acb1 (protein)

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7T27 \| pdb_00007t27	Download File View File

Structure of phage FBB1 anti-CBASS nuclease Acb1-3'3'-cGAMP complex in post reaction state

Hobbs, S.J., Wein, T., Lu, A., Morehouse, B.R., Schnabel, J., Sorek, R., Kranzusch, P.J.

(2022) Nature 605: 522-526

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Erwinia phage FBB1
Macromolecule	Acb1 (protein)
Unique Ligands	ECI, SO4

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7T28 \| pdb_00007t28	Download File View File

Structure of phage Bsp38 anti-Pycsar nuclease Apyc1 in apo state

Hobbs, S.J., Wein, T., Lu, A., Morehouse, B.R., Schnabel, J., Sorek, R., Kranzusch, P.J.

(2022) Nature 605: 522-526

Released	2022-04-20
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Bacillus phage BSP38
Macromolecule	Putative metal-dependent hydrolase (protein)
Unique Ligands	ZN

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7U2R \| pdb_00007u2r	Download File View File

Structure of Paenibacillus sp. J14 Apyc1

Hobbs, S.J., Wein, T., Lu, A., Morehouse, B.R., Schnabel, J., Sorek, R., Kranzusch, P.J.

(2022) Nature 605: 522-526

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Paenibacillus sp. J14
Macromolecule	Apyc1 (protein)
Unique Ligands	ZN

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7U2S \| pdb_00007u2s	Download File View File

Structure of Paenibacillus xerothermodurans Apyc1 in the apo state

Hobbs, S.J., Wein, T., Lu, A., Morehouse, B.R., Schnabel, J., Sorek, R., Kranzusch, P.J.

(2022) Nature 605: 522-526

Released	2022-04-20
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Paenibacillus xerothermodurans
Macromolecule	Apyc1 (protein)
Unique Ligands	ZN

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7UAV \| pdb_00007uav	Download File View File

Structure of Clostridium botulinum prophage Tad1 in apo state

Lu, A., Leavitt, A., Yirmiya, E., Amitai, G., Garb, J., Morehouse, B.R., Hobbs, S.J., Sorek, R., Kranzusch, P.J.

(2022) Nature 611: 326-331

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium botulinum
Macromolecule	ABC transporter ATPase (protein)

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7UAW \| pdb_00007uaw	Download File View File

Structure of Clostridium botulinum prophage Tad1 in complex with 1''-2' gcADPR

Lu, A., Leavitt, A., Yirmiya, E., Amitai, G., Garb, J., Morehouse, B.R., Hobbs, S.J., Sorek, R., Kranzusch, P.J.

(2022) Nature 611: 326-331

Released	2022-10-05
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Clostridium botulinum
Macromolecule	ABC transporter ATPase (protein)
Unique Ligands	MF6

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8B6U \| pdb_00008b6u	Download File View File

Mpf2Ba1 monomer

Marini, G., Poland, B., Leininger, C., Lukoyanova, N., Spielbauer, D., Barry, J., Altier, D., Lum, A., Scolaro, E., Perez-Ortega, C., Yalpani, N., Sandahl, G., Mabry, T., Klever, J., Nowatzki, T., Zhao, J.Z., Sethi, A., Kassa, A., Crane, V., Lu, A., Nelson, M.E., Eswar, N., Topf, M., Saibil, H.R.

(2023) Nat Commun 14: 4171-4171

Released	2023-05-31
Method	X-RAY DIFFRACTION 2.134 Å
Organisms	Pseudomonas monteilii
Macromolecule	Mpf2Ba1 (protein)
Unique Ligands	MG

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8B6V \| pdb_00008b6v	Download File View File

Mp2Ba1 pre-pore

Marini, G., Poland, B., Leininger, C., Lukoyanova, N., Spielbauer, D., Barry, J., Altier, D., Lum, A., Scolaro, E., Perez Ortega, C., Yalpani, N., Sandahl, G., Mabry, T., Klever, J., Nowatzki, T., Zhao, J.Z., Sethi, A., Kassa, A., Crane, V., Lu, A., Nelson, M.E., Eswar, N., Topf, M., Saibil, H.R.

(2023) Nat Commun 14: 4171-4171

Released	2023-05-31
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Pseudomonas monteilii
Macromolecule	Mpf2Ba1 (protein)
Unique Ligands	MG

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8B6W \| pdb_00008b6w	Download File View File

Mpf2Ba1 pore

(2023) Nat Commun 14: 4171-4171

Released	2023-05-31
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Pseudomonas monteilii
Macromolecule	Mpf2Ba1 (protein)
Unique Ligands	MG

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8SMD \| pdb_00008smd	Download File View File

Structure of Clostridium botulinum prophage Tad1 in complex with 1''-3' gcADPR

Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.

(2024) Nature 625: 352-359

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium botulinum
Macromolecule	ABC transporter ATPase (protein)
Unique Ligands	OJC

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8SME \| pdb_00008sme	Download File View File

Structure of SPO1 phage Tad2 in apo state

Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.

(2024) Nature 625: 352-359

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Okubovirus
Macromolecule	Gp34.65 (protein)

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8SMF \| pdb_00008smf	Download File View File

Structure of SPO1 phage Tad2 in complex with 1''-3' gcADPR

Lu, A., Yirmiya, E., Leavitt, A., Avraham, C., Osterman, I., Garb, J., Antine, S.P., Mooney, S.E., Hobbs, S.J., Amitai, G., Sorek, R., Kranzusch, P.J.

(2024) Nature 625: 352-359

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Okubovirus
Macromolecule	Gp34.65 (protein)
Unique Ligands	MG, OJC

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3J63 | pdb_00003j63

3JBL | pdb_00003jbl

3QPA | pdb_00003qpa

3QPC | pdb_00003qpc

3QPD | pdb_00003qpd

4O7Q | pdb_00004o7q

5FNA | pdb_00005fna

5H8D | pdb_00005h8d

5H8O | pdb_00005h8o

5JQE | pdb_00005jqe

5L08 | pdb_00005l08

6MB2 | pdb_00006mb2

7T26 | pdb_00007t26

7T27 | pdb_00007t27

7T28 | pdb_00007t28

7U2R | pdb_00007u2r

7U2S | pdb_00007u2s

7UAV | pdb_00007uav

7UAW | pdb_00007uaw

8B6U | pdb_00008b6u

8B6V | pdb_00008b6v

8B6W | pdb_00008b6w

8SMD | pdb_00008smd

8SME | pdb_00008sme

8SMF | pdb_00008smf