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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "MacRae, I.J."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Homo sapiens (25)
	synthetic construct (23)
	Arabidopsis thaliana (3)
	Carnation Italian ringspot virus (3)
	Lampyridae (3)
	Penicillium chrysogenum (3)
	unidentified (3)
	Ephydatia fluviatilis (2)
	Giardia intestinalis (2)
	Lassa virus Josiah (2)

More...

Taxonomy

	Eukaryota (38)
	other sequences (23)
	Riboviria (10)
	unclassified sequences (3)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (40)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (45)
	RNA (35)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (11)
	2.5 - 3.0 (15)
	3.0 - 3.5 (7)
	3.5 - 4.0 (6)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (2)
	2010 - 2014 (13)
	2015 - 2019 (20)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (30)
	Transferases (4)

Symmetry Type

	Asymmetric (36)
	Cyclic (8)
	Dihedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All beta proteins (5)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 45 Structures

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1D6J \| pdb_00001d6j	Download File View File

CRYSTAL STRUCTURE OF ADENOSINE 5'-PHOSPHOSULFATE (APS) KINASE FROM PENICILLIUM CHRYSOGENUM

MacRae, I.J., Segel, I.H., Fisher, A.J.

(2000) Biochemistry 39: 1613-1621

Released	2000-02-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Penicillium chrysogenum
Macromolecule	ADENOSINE-5'PHOSPHOSULFATE KINASE (protein)
Unique Ligands	TLA

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1I2D \| pdb_00001i2d	Download File View File

CRYSTAL STRUCTURE OF ATP SULFURYLASE FROM PENICILLIUM CHRYSOGENUM

MacRae, I.J., Segel, I.H., Fisher, A.J.

(2001) Biochemistry 40: 6795-6804

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Penicillium chrysogenum
Macromolecule	ATP SULFURYLASE (protein)
Unique Ligands	ADX

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1JHD \| pdb_00001jhd	Download File View File

Crystal Structure of Bacterial ATP Sulfurylase from the Riftia pachyptila Symbiont

Beynon, J.D., MacRae, I.J., Huston, S.L., Nelson, D.C., Segel, I.H., Fisher, A.J.

(2001) Biochemistry 40: 14509-14517

Released	2001-12-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	sulfur-oxidizing endosymbiont of Riftia pachyptila
Macromolecule	SULFATE ADENYLYLTRANSFERASE (protein)
Unique Ligands	BR, SO4

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1M8P \| pdb_00001m8p	Download File View File

Crystal Structure of P. chrysogenum ATP Sulfurylase in the T-state

MacRae, I.J., Segel, I.H., Fisher, A.J.

(2002) Nat Struct Biol 9: 945-949

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Penicillium chrysogenum
Macromolecule	sulfate adenylyltransferase (protein)
Unique Ligands	PPS

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2FFL \| pdb_00002ffl	Download File View File

Crystal Structure of Dicer from Giardia intestinalis

Doudna, J.A., MacRae, I.J., Adams, P.D.

(2006) Science 311: 195-198

Released	2006-01-24
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Giardia intestinalis
Macromolecule	Dicer (protein)
Unique Ligands	MN

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2QVW \| pdb_00002qvw	Download File View File

Structure of Giardia Dicer refined against twinned data

Doudna, J.A., MacRae, I.J.

(2007) Acta Crystallogr D Biol Crystallogr 63: 993-999

Released	2007-09-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Giardia intestinalis
Macromolecule	GLP_546_48378_50642 (protein)
Unique Ligands	MN

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3KS4 \| pdb_00003ks4	Download File View File

Crystal structure of Reston ebolavirus VP35 RNA binding domain

Kimberlin, C.R., Bornholdt, Z.A., Li, S., Woods, V.L., Macrae, I.J., Saphire, E.O.

(2009) Proc Natl Acad Sci U S A 107: 314-319

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Reston ebolavirus - Reston
Macromolecule	Polymerase cofactor VP35 (protein)

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3KS8 \| pdb_00003ks8	Download File View File

Crystal structure of Reston ebolavirus VP35 RNA binding domain in complex with 18bp dsRNA

Kimberlin, C.R., Bornholdt, Z.A., Li, S., Woods, V.L., Macrae, I.J., Saphire, E.O.

(2009) Proc Natl Acad Sci U S A 107: 314-319

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Reston ebolavirus - Reston
Macromolecule	Polymerase cofactor VP35 (protein) 5'-R(APGPAPAPGPGPAPGPGPGPAPGPGPGPAPGPGPA)-3' (nucleic acid) 5'-R(UPCPCPUPCPCPCPUPCPCPCPUPCPCPUPUPCPU)-3' (nucleic acid)

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3Q7B \| pdb_00003q7b	Download File View File

Exonuclease domain of Lassa virus nucleoprotein

Hastie, K.M., Kimberlin, C.R., Zandonatti, M.A., MacRae, I.J., Saphire, E.O.

(2011) Proc Natl Acad Sci U S A 108: 2396-2401

Released	2011-02-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lassa virus Josiah
Macromolecule	Nucleoprotein (protein)
Unique Ligands	PO4, ZN

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3Q7C \| pdb_00003q7c	Download File View File

Exonuclease domain of Lassa virus nucleoprotein bound to manganese

Hastie, K.M., Kimberlin, C.R., Zandonatti, M.A., MacRae, I.J., Saphire, E.O.

(2011) Proc Natl Acad Sci U S A 108: 2396-2401

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lassa virus Josiah
Macromolecule	Nucleoprotein (protein)
Unique Ligands	MN, PO4, ZN

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4GH9 \| pdb_00004gh9	Download File View File

Crystal structure of Marburg virus VP35 RNA binding domain

Bale, S., Jean-Philippe, J., Bornholdt, Z.A., Kimberlin, C.K., Halfmann, P., Zandonatti, M.A., Kunert, J., Kroon, G.J.A., Kawaoka, Y., MacRae, I.J., Wilson, I.A., Saphire, E.O.

(2012) PLoS Pathog 8: e1002916-e1002916

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Marburg virus - Musoke, Kenya, 1980
Macromolecule	Polymerase cofactor VP35 (protein)
Unique Ligands	ACT

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4GHA \| pdb_00004gha	Download File View File

Crystal structure of Marburg virus VP35 RNA binding domain bound to 12-bp dsRNA

Bale, S., Jean-Philippe, J., Bornholdt, Z.A., Kimberlin, C.K., Halfmann, P., Zandonatti, M.A., Kunert, J., Kroon, G.J.A., Kawaoka, Y., MacRae, I.J., Wilson, I.A., Saphire, E.O.

(2012) PLoS Pathog 8: e1002916-e1002916

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Marburg virus - Musoke, Kenya, 1980
Macromolecule	Polymerase cofactor VP35 (protein) RNA (5'-R(CPUPAPGPAPCPGPUPCPUPAPG)-3') (nucleic acid)

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4OLA \| pdb_00004ola	Download File View File

Crystal Structure of Human Argonaute2

Schirle, N.T., MacRae, I.J.

(2012) Science 336: 1037-1040

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Protein argonaute-2 (protein) 5'-R(PAPAPAPAPAPAPAPAPAPU)-3' (nucleic acid)
Unique Ligands	IPA, IPH

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4OLB \| pdb_00004olb	Download File View File

Crystal Structure of Human Argonaute2 Bound to Tryptophan

Schirle, N.T., MacRae, I.J.

(2012) Science 336: 1037-1040

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.899 Å
Organisms	Homo sapiens
Macromolecule	Protein argonaute-2 (protein) 5'-R(PAPAPAPAPAPAPAPAPAPU)-3' (nucleic acid)
Unique Ligands	TRP

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4W5N \| pdb_00004w5n	Download File View File

The Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNA

Schirle, N.T., Sheu-Gruttadauria, J., MacRae, I.J.

(2014) Science 346: 608-613

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(PUPUPCPAPCPAPUPUPCPAPAPGPUPCPUPCPUPU)-3') (nucleic acid)
Unique Ligands	IPH, MG

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4W5O \| pdb_00004w5o	Download File View File

The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9

Schirle, N.T., MacRae, I.J.

(2014) Science 346: 608-613

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPAPAPA)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPUPUPU)-3') (nucleic acid)
Unique Ligands	IPA, IPH, MG, PO4

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4W5Q \| pdb_00004w5q	Download File View File

The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8

Schirle, N.T., MacRae, I.J.

(2014) Science 346: 608-613

Released	2014-11-12
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(APAPAPUPGPUPGPAPAPA)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPU)-3') (nucleic acid)
Unique Ligands	IPH, MG

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4W5R \| pdb_00004w5r	Download File View File

The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target)

Schirle, N.T., MacRae, I.J.

(2014) Science 346: 608-613

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(PAPAPUPGPUPGPAPAPA)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPUPU)-3') (nucleic acid)
Unique Ligands	IPA, IPH, MG

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4W5T \| pdb_00004w5t	Download File View File

The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7

Schirle, N.T., MacRae, I.J.

(2014) Science 346: 608-613

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(APCPAPUPGPUPGPAPAPA)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPUPU)-3') (nucleic acid)
Unique Ligands	IPH, MG

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4Z4C \| pdb_00004z4c	Download File View File

Human Argonaute2 Bound to t1-C Target RNA

Schirle, N.T., MacRae, I.J.

(2015) Elife 4:

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPAPC)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPUPU)-3') (nucleic acid)
Unique Ligands	IPA, IPH, MG, PO4

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4Z4D \| pdb_00004z4d	Download File View File

Human Argonaute2 Bound to t1-G Target RNA

Schirle, N.T., MacRae, I.J.

(2015) Elife 4:

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPAPG)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPUPUP*U)-3') (nucleic acid)
Unique Ligands	IPA, IPH, MG

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4Z4E \| pdb_00004z4e	Download File View File

Human Argonaute2 Bound to t1-U Target RNA

Schirle, N.T., MacRae, I.J.

(2015) Elife 4:

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPAPU)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPUPU)-3') (nucleic acid)
Unique Ligands	IPA, IPH, MG, PO4

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4Z4F \| pdb_00004z4f	Download File View File

Human Argonaute2 Bound to t1-DAP Target RNA

Schirle, N.T., MacRae, I.J.

(2015) Elife 4:

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPAP(N6G)PA)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPUPU)-3') (nucleic acid)
Unique Ligands	IPH, MG

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4Z4G \| pdb_00004z4g	Download File View File

Human Argonaute2 Bound to t1-Inosine Target RNA

Schirle, N.T., MacRae, I.J.

(2015) Elife 4:

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPA)-D(P(IMP))-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPUPUP*U)-3') (nucleic acid)
Unique Ligands	IPH, MG

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4Z4H \| pdb_00004z4h	Download File View File

Human Argonaute2 A481T Mutant Bound to t1-A Target RNA

Schirle, N.T., MacRae, I.J.

(2015) Elife 4:

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.504 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Protein argonaute-2 (protein) RNA (5'-R(CPAPAPUPGPUPGPA)-3') (nucleic acid) RNA (5'-R(PUPUPCPAPCPAPUPUPGPCPCPCPAPAPGPUPCPUPUPU)-3') (nucleic acid)
Unique Ligands	IPH, MG

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1D6J | pdb_00001d6j

1I2D | pdb_00001i2d

1JHD | pdb_00001jhd

1M8P | pdb_00001m8p

2FFL | pdb_00002ffl

2QVW | pdb_00002qvw

3KS4 | pdb_00003ks4

3KS8 | pdb_00003ks8

3Q7B | pdb_00003q7b

3Q7C | pdb_00003q7c

4GH9 | pdb_00004gh9

4GHA | pdb_00004gha

4OLA | pdb_00004ola

4OLB | pdb_00004olb

4W5N | pdb_00004w5n

4W5O | pdb_00004w5o

4W5Q | pdb_00004w5q

4W5R | pdb_00004w5r

4W5T | pdb_00004w5t

4Z4C | pdb_00004z4c

4Z4D | pdb_00004z4d

4Z4E | pdb_00004z4e

4Z4F | pdb_00004z4f

4Z4G | pdb_00004z4g

4Z4H | pdb_00004z4h