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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mackereth, C.D."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Caenorhabditis elegans (6)
	Homo sapiens (5)
	Mus musculus (4)
	synthetic construct (3)
	Methanothermobacter thermautotrophicus (1)
	Saccharomyces cerevisiae (1)
	Schizosaccharomyces pombe (1)

Taxonomy

	Eukaryota (17)
	other sequences (3)
	Archaea (1)

Experimental Method

	SOLUTION NMR (16)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

	Protein (19)
	RNA (4)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (7)
	2015 - 2019 (6)
	2020 - 2024 (1)

Enzyme Classification Name

Transferases (2)

Symmetry Type

	Asymmetric (17)
	Cyclic (2)

SCOP Classification

	All alpha proteins (3)
	Artifacts (3)
	Alpha and beta proteins (a+b) (1)

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1 to 19 of 19 Structures

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1EF4 \| pdb_00001ef4	Download File View File

SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Mackereth, C.D., Arrowsmith, C.H., Edwards, A.M., Mcintosh, L.P., Northeast Structural Genomics Consortium (NESG)

(2000) Proc Natl Acad Sci U S A 97: 6316-6321

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	DNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	ZN

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1SXD \| pdb_00001sxd	Download File View File

Solution Structure of the Pointed (PNT) Domain from mGABPa

Mackereth, C.D., Schaerpf, M., Gentile, L.N., MacIntosh, S.E., Slupsky, C.M., McIntosh, L.P.

(2004) J Mol Biology 342: 1249-1264

Released	2004-09-21
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GA repeat binding protein, alpha (protein)

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1SXE \| pdb_00001sxe	Download File View File

The solution structure of the Pointed (PNT) domain from the transcrition factor Erg

Mackereth, C.D., Schaerpf, M., Gentile, L.N., MacIntosh, S.E., Slupsky, C.M., McIntosh, L.P.

(2004) J Mol Biology 342: 1249-1264

Released	2004-09-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcriptional regulator ERG (protein)

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1ZZP \| pdb_00001zzp	Download File View File

Solution structure of the F-actin binding domain of Bcr-Abl/c-Abl

Hantschel, O., Wiesner, S., Guttler, T., Mackereth, C.D., Rix, L.L.R., Mikes, Z., Dehne, J., Gorlich, D., Sattler, M., Superti-Furga, G.

(2005) Mol Cell 19: 461-473

Released	2005-08-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Proto-oncogene tyrosine-protein kinase ABL1 (protein)

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2JUO \| pdb_00002juo	Download File View File

GABPa OST domain

Kang, H., Nelson, M.L., Mackereth, C.D., Schaerpf, M., Graves, B.J., McIntosh, L.P.

(2008) J Mol Biology 377: 636-646

Released	2008-04-08
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GA-binding protein alpha chain (protein)

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2L9B \| pdb_00002l9b	Download File View File

Heterodimer between Rna14p monkeytail domain and Rna15p hinge domain of the yeast CF IA complex

Moreno-Morcillo, M., Minvielle-Sebastia, L., Fribourg, S., Mackereth, C.D.

(2011) Structure 19: 534-545

Released	2011-04-27
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	mRNA 3'-end-processing protein RNA14 (protein) mRNA 3'-end-processing protein RNA15 (protein)

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2XC7 \| pdb_00002xc7	Download File View File

Solution Structure of PHAX-RBD in complex with ssRNA

Mourao, A., Mackereth, C.D., Varrot, A., Cusack, S., Sattler, M.

(2010) RNA 16: 1205

Released	2010-04-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PHOSPHORYLATED ADAPTER RNA EXPORT PROTEIN (protein) 5'-(APUPCP*GP)-3' (nucleic acid)

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2YH0 \| pdb_00002yh0	Download File View File

Solution structure of the closed conformation of human U2AF65 tandem RRM1 and RRM2 domains

Mackereth, C.D., Madl, T., Simon, B., Zanier, K., Gasch, A., Sattler, M.

(2011) Nature 475: 408

Released	2011-07-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SPLICING FACTOR U2AF 65 KDA SUBUNIT (protein)

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2YH1 \| pdb_00002yh1	Download File View File

Model of human U2AF65 tandem RRM1 and RRM2 domains with eight-site uridine binding

Mackereth, C.D., Madl, T., Simon, B., Zanier, K., Gasch, A., Sattler, M.

(2011) Nature 475: 408

Released	2011-07-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SPLICING FACTOR U2AF 65 KDA SUBUNIT (protein) 5'-R(UPUPUPUPUPUPUPUP*UP)-3' (nucleic acid)

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4CH0 \| pdb_00004ch0	Download File View File

RRM domain from C. elegans SUP-12

Amrane, S., Mackereth, C.D.

(2014) Nat Commun 5: 4595

Released	2014-09-03
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	PROTEIN SUP-12, ISOFORM B (protein)

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4CH1 \| pdb_00004ch1	Download File View File

RRM domain from C. elegans SUP-12 bound to GGTGTGC DNA

Amrane, S., Mackereth, C.D.

(2014) Nat Commun 5: 4595

Released	2014-09-03
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	PROTEIN SUP-12, ISOFORM B (protein) GGTGTGC (nucleic acid)

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4CIO \| pdb_00004cio	Download File View File

RRM domain from C. elegans SUP-12 bound to GGUGUGC RNA

Amrane, S., Mackereth, C.D.

(2014) Nat Commun 5: 4595

Released	2014-09-03
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	PROTEIN SUP-12, ISOFORM A (protein) 5'-R(GPGPUPGPUPGP*CP)-3' (nucleic acid)

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5BJR \| pdb_00005bjr	Download File View File

Crystal structure of the N-terminal RRM domain from MEC-8

Soufari, H., Mackereth, C.D.

(2017) RNA 23: 308-316

Released	2017-01-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Caenorhabditis elegans
Macromolecule	Mec-8 protein (protein)
Unique Ligands	NH4

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5TKZ \| pdb_00005tkz	Download File View File

MEC-8 N-terminal RRM bound to tandem GCAC ligand

Soufari, H., Mackereth, C.D.

(2017) RNA 23: 308-316

Released	2017-01-11
Method	X-RAY DIFFRACTION 1.529 Å
Organisms	Caenorhabditis elegans synthetic construct
Macromolecule	Mec-8 protein (protein) DNA (5'-D(APGPCPAPCPAPTPTPTPTPTPTPTPTPAPGPCPAPCPA)-3') (nucleic acid)

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6DG0 \| pdb_00006dg0	Download File View File

MEC-8 C-terminal RRM domain bound to AGCACA

Mackereth, C.D., Soufari, H.

To be published

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.457 Å
Organisms	Caenorhabditis elegans
Macromolecule	Mec-8 protein (protein) DNA (5'-D(APGPCPAPCPA)-3') (nucleic acid)

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6RQS \| pdb_00006rqs	Download File View File

RW16 peptide

Jobin, M.-L., Grelard, A., Alves, I., Mackereth, C.D.

(2019) Int J Mol Sci 20:

Released	2019-10-23
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	ARG-ARG-TRP-ARG-ARG-TRP-TRP-ARG-ARG-TRP-TRP-ARG-ARG-TRP-ARG-ARG (protein)

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6SO9 \| pdb_00006so9	Download File View File

Mouse RBM20 RRM domain in complex with AUCUUA RNA

Mackereth, C.D., Upadhyay, S.K.

(2020) Nucleic Acids Res 48: 4538-4550

Released	2019-11-06
Method	SOLUTION NMR
Organisms	Mus musculus synthetic construct
Macromolecule	RNA-binding protein 20 (protein) AUCUUA (nucleic acid)

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6SOE \| pdb_00006soe	Download File View File

Mouse RBM20 RRM domain

Mackereth, C.D., Upadhyay, S.K.

(2020) Nucleic Acids Res 48: 4538-4550

Released	2019-11-06
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	RNA-binding protein 20 (protein)

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7QUU \| pdb_00007quu	Download File View File

Red1-Iss10 complex

Mackereth, C.D., Kadlec, J., Laroussi, H.

(2022) Nat Commun 13: 4969-4969

Released	2022-09-07
Method	SOLUTION NMR
Organisms	Schizosaccharomyces pombe
Macromolecule	NURS complex subunit red1 (protein) Uncharacterized protein C7D4.14c (protein)

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1EF4 | pdb_00001ef4

SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

1SXD | pdb_00001sxd

Solution Structure of the Pointed (PNT) Domain from mGABPa

1SXE | pdb_00001sxe

The solution structure of the Pointed (PNT) domain from the transcrition factor Erg

1ZZP | pdb_00001zzp

Solution structure of the F-actin binding domain of Bcr-Abl/c-Abl

2JUO | pdb_00002juo

GABPa OST domain

2L9B | pdb_00002l9b

Heterodimer between Rna14p monkeytail domain and Rna15p hinge domain of the yeast CF IA complex

2XC7 | pdb_00002xc7

Solution Structure of PHAX-RBD in complex with ssRNA

2YH0 | pdb_00002yh0

Solution structure of the closed conformation of human U2AF65 tandem RRM1 and RRM2 domains

2YH1 | pdb_00002yh1

Model of human U2AF65 tandem RRM1 and RRM2 domains with eight-site uridine binding

4CH0 | pdb_00004ch0

RRM domain from C. elegans SUP-12

4CH1 | pdb_00004ch1

RRM domain from C. elegans SUP-12 bound to GGTGTGC DNA

4CIO | pdb_00004cio

RRM domain from C. elegans SUP-12 bound to GGUGUGC RNA

5BJR | pdb_00005bjr

Crystal structure of the N-terminal RRM domain from MEC-8

5TKZ | pdb_00005tkz

MEC-8 N-terminal RRM bound to tandem GCAC ligand

6DG0 | pdb_00006dg0

MEC-8 C-terminal RRM domain bound to AGCACA

6RQS | pdb_00006rqs

RW16 peptide

6SO9 | pdb_00006so9

Mouse RBM20 RRM domain in complex with AUCUUA RNA

6SOE | pdb_00006soe

Mouse RBM20 RRM domain

7QUU | pdb_00007quu

Red1-Iss10 complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EF4 | pdb_00001ef4

1SXD | pdb_00001sxd

1SXE | pdb_00001sxe

1ZZP | pdb_00001zzp

2JUO | pdb_00002juo

2L9B | pdb_00002l9b

2XC7 | pdb_00002xc7

2YH0 | pdb_00002yh0

2YH1 | pdb_00002yh1

4CH0 | pdb_00004ch0

4CH1 | pdb_00004ch1

4CIO | pdb_00004cio

5BJR | pdb_00005bjr

5TKZ | pdb_00005tkz

6DG0 | pdb_00006dg0

6RQS | pdb_00006rqs

6SO9 | pdb_00006so9

6SOE | pdb_00006soe

7QUU | pdb_00007quu