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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mate, M.J."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Escherichia coli (16)
	Pleurotus eryngii (7)
	Drosophila melanogaster (3)
	Mus musculus (1)
	Mycobacterium tuberculosis H37Rv (1)
	Rickettsia felis (1)
	Saccharomyces cerevisiae (1)
	Stenotrophomonas maltophilia (1)

Taxonomy

	Bacteria (19)
	Eukaryota (12)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

	Protein (31)
	DNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (15)
	2.5 - 3.0 (5)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (10)
	2005 - 2009 (9)
	2010 - 2014 (6)
	2015 - 2019 (3)

Enzyme Classification Name

	Oxidoreductases (17)
	Hydrolases (10)

Symmetry Type

	Asymmetric (19)
	Dihedral (9)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a/b) (11)
	Multi-domain proteins (alpha and beta) (9)
	Alpha and beta proteins (a+b) (8)
	All alpha proteins (12)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 31 Structures

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1A4E \| pdb_00001a4e	Download File View File

CATALASE A FROM SACCHAROMYCES CEREVISIAE

Mate, M.J.

(1999) J Mol Biology 286: 135-149

Released	1999-08-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CATALASE A (protein)
Unique Ligands	AZI, HEM, SO4

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1CF9 \| pdb_00001cf9	Download File View File

Structure of the mutant VAL169CYS of catalase HPII from Escherichia coli

Mate, M.J., Loewen, P.C., Fita, I.

(1999) J Biological Chem 274: 27717-27725

Released	1999-04-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (CATALASE HPII) (protein)
Unique Ligands	HEM

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1GG9 \| pdb_00001gg9	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, HIS128ASN VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

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1GGE \| pdb_00001gge	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, NATIVE STRUCTURE AT 1.9 A RESOLUTION.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (CATALASE HPII) (protein)
Unique Ligands	HDD

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1GGF \| pdb_00001ggf	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, VARIANT HIS128ASN, COMPLEX WITH HYDROGEN PEROXIDE.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM, PEO

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1GGH \| pdb_00001ggh	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, HIS128ALA VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

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1GGJ \| pdb_00001ggj	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, ASN201ALA VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HDD

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1GGK \| pdb_00001ggk	Download File View File

CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, ASN201HIS VARIANT.

Melik-Adamyan, W.R., Bravo, J., Carpena, X., Switala, J., Mate, M.J., Fita, I., Loewen, P.C.

(2001) Proteins 44: 270-281

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Escherichia coli
Macromolecule	CATALASE HPII (protein)
Unique Ligands	HEM

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1GV4 \| pdb_00001gv4	Download File View File

Murine apoptosis-inducing factor (AIF)

Mate, M.J., Alzari, P.M.

(2002) Nat Struct Biol 9: 442

Released	2002-04-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	PROGRAMED CELL DEATH PROTEIN 8 (protein)
Unique Ligands	FAD

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1QF7 \| pdb_00001qf7	Download File View File

STRUCTURE OF THE MUTANT HIS392GLN OF CATALASE HPII FROM E. COLI

Mate, M.J., Loewen, P.C., Fita, I.

(1999) J Biological Chem 274: 27717-27725

Released	1999-04-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (CATALASE HPII) (protein)
Unique Ligands	HEM

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1V13 \| pdb_00001v13	Download File View File

CRYSTAL STRUCTURE OF THE MUTANT HIS103ALA OF THE COLICIN E9 DNASE DOMAIN IN COMPLEX WITH ZN+2 (2.0 ANGSTROMS)

Mate, M.J., Kleanthous, C.

(2004) J Biological Chem 279: 34763

Released	2004-06-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein)
Unique Ligands	ZN

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1V14 \| pdb_00001v14	Download File View File

Crystal Structure of the Colicin E9, mutant His103Ala, in complex with Mg+2 and dsDNA (resolution 2.9A)

Mate, M.J., Kleanthous, C.

(2004) J Biological Chem 279: 34763

Released	2004-06-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) 5'-D(GPCPGPAPTPCPGPCP)-3' (nucleic acid)
Unique Ligands	MG

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1V15 \| pdb_00001v15	Download File View File

CRYSTAL STRUCTURE OF THE COLICIN E9, MUTANT HIS103ALA, IN COMPLEX WITH ZN+2 AND DSDNA (RESOLUTION 2.4A)

Mate, M.J., Kleanthous, C.

(2004) J Biological Chem 279: 34763

Released	2004-06-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) 5'-D(GPCPGPAPTPCPGPCP)-3' (nucleic acid)
Unique Ligands	ZN

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2CBY \| pdb_00002cby	Download File View File

Crystal structure of the ATP-dependent Clp Protease proteolytic subunit 1 (ClpP1) from Mycobacterium tuberculosis

Mate, M.J., Portnoi, D., Alzari, P.M., Ortiz-Lombardia, M.

(2007) Acta Crystallogr D Biol Crystallogr 63: 249

Released	2006-01-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 (protein)

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2IVZ \| pdb_00002ivz	Download File View File

Structure of TolB in complex with a peptide of the colicin E9 T- domain

Loftus, S.R., Walker, D., Mate, M.J., Bonsor, D.A., James, R., Moore, G.R., Kleanthous, C.

(2006) Proc Natl Acad Sci U S A 103: 12353

Released	2006-08-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN-E9 (protein) PROTEIN TOLB (protein)
Unique Ligands	CA

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2VKA \| pdb_00002vka	Download File View File

Site-Directed Mutagenesis of the Catalytic Tryptophan Environment in Pleurotus eryngii Versatile Peroxidase

Ruiz-Duenas, F.J., Morales, M., Mate, M.J., Romero, A., Martinez, M.J., Smith, A., Martinez, A.T.

(2008) Biochemistry 47: 1685

Released	2008-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pleurotus eryngii
Macromolecule	VERSATILE PEROXIDASE VPL2 (protein)
Unique Ligands	CA, GOL, HEM, SO4

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2VLN \| pdb_00002vln	Download File View File

N75A mutant of E9 DNase domain in complex with Im9

Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.

(2008) J Mol Biology 379: 745

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN-E9 IMMUNITY PROTEIN (protein)
Unique Ligands	MLA

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2VLO \| pdb_00002vlo	Download File View File

K97A mutant of E9 DNase domain in complex with Im9

Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.

(2008) J Mol Biology 379: 745

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN-E9 IMMUNITY PROTEIN (protein)
Unique Ligands	SO4

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2VLP \| pdb_00002vlp	Download File View File

R54A mutant of E9 DNase domain in complex with Im9

Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.

(2008) J Mol Biology 379: 745

Released	2008-05-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN-E9 IMMUNITY PROTEIN (protein)
Unique Ligands	MLA

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2VLQ \| pdb_00002vlq	Download File View File

F86A mutant of E9 DNase domain in complex with Im9

Keeble, A.H., Joachimiak, L.A., Mate, M.J., Meenan, N., Kirkpatrick, N., Baker, D., Kleanthous, C.

(2008) J Mol Biology 379: 745

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E9 (protein) COLICIN-E9 IMMUNITY PROTEIN (protein)
Unique Ligands	MLA

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2W23 \| pdb_00002w23	Download File View File

Structure of mutant W169Y of Pleurotus eryngii versatile peroxidase (VP)

Ruiz-Duenas, F.J., Pogni, R., Morales, M., Giansanti, S., Mate, M.J., Romero, A., Martinez, M.J., Basosi, R., Martinez, A.T.

(2009) J Biological Chem 284: 7986

Released	2009-01-20
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Pleurotus eryngii
Macromolecule	VERSATILE PEROXIDASE VPL2 (protein)
Unique Ligands	CA, GOL, HEM, SO4

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2W53 \| pdb_00002w53	Download File View File

Structure of SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF.

Mate, M.J., Romero, A., Hernandez, A., Martinez, J.L.

(2009) J Biological Chem 284: 14428

Released	2009-04-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	REPRESSOR (protein)
Unique Ligands	SO4

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3ZVK \| pdb_00003zvk	Download File View File

Crystal structure of VapBC2 from Rickettsia felis bound to a DNA fragment from their promoter

Mate, M.J., Ortiz-Lombardia, M., Cambillau, C.

(2012) Nucleic Acids Res 40: 3245

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rickettsia felis
Macromolecule	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB (protein) TOXIN OF TOXIN-ANTITOXIN SYSTEM (protein) DNA (nucleic acid)
Unique Ligands	MES

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4CYC \| pdb_00004cyc	Download File View File

CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS

Foos, N., Mate, M.J., Ortiz-Lombardia, M.

(2015) Structure 23: 270

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Drosophila melanogaster
Macromolecule	HOMEOBOX PROTEIN EXTRADENTICLE (protein) HOMEOTIC PROTEIN ULTRABITHORAX (protein) 5'-D(APCPGPTPGPAPTPTPTPAPTPGPGPCPGP)-3' (nucleic acid) 5'-D(GPTPCPGPCPCPAPTPAPAPAPTPCPAPCP)-3' (nucleic acid)