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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "McDonald, T.P."

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Search Summary

This query matches 268 Structures.

Refinements

Structure Determination Methodology

experimental (268)

Scientific Name of Source Organism

	Homo sapiens (70)
	Variovorax paradoxus (11)
	Escherichia coli (9)
	Chelativorans sp. BNC1 (8)
	Mus musculus (7)
	Mycobacterium tuberculosis H37Rv (7)
	synthetic construct (7)
	Enterococcus faecium (6)
	Escherichia coli K-12 (6)
	Acinetobacter sp. DL-28 (5)

More...

Taxonomy

	Bacteria (141)
	Eukaryota (111)
	Archaea (8)
	other sequences (7)
	Riboviria (6)
	Duplodnaviria (3)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (268)

Polymer Entity Type

	Protein (262)
	DNA (11)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (96)
	2.0 - 2.5 (78)
	2.5 - 3.0 (48)
	3.0 - 3.5 (26)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2000 - 2004 (17)
	2005 - 2009 (50)
	2010 - 2014 (48)
	2015 - 2019 (79)
	2020 - 2024 (63)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (36)
	Transferases (41)
	Oxidoreductases (27)
	Lyases (31)
	Isomerases (13)
	Ligases (4)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (11)
	mpstruc (10)
	MemProtMD (8)
	OPM (8)

Symmetry Type

	Asymmetric (105)
	Cyclic (105)
	Dihedral (70)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (51)
	All beta proteins (19)
	Alpha and beta proteins (a+b) (27)
	Artifacts (22)
	All alpha proteins (7)
	Small proteins (3)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 268 Structures

Page 1 of 11

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173D \| pdb_0000173d	Download File View File

MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA

Kamitori, S., Takusagawa, F.

(1994) J Am Chem Soc 116: 4154

Released	1994-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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1B23 \| pdb_00001b23	Download File View File

E. coli cysteinyl-tRNA and T. aquaticus elongation factor EF-TU:GTP ternary complex

Nissen, P., Kjeldgaard, M., Thirup, S., Nyborg, J.

(1999) Structure 7: 143-156

Released	1998-12-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Thermus aquaticus
Macromolecule	ELONGATION FACTOR TU (protein) CYSTEINYL TRNA (nucleic acid)
Unique Ligands	CYS, GNP, MG, SO4

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1C2B \| pdb_00001c2b	Download File View File

ELECTROPHORUS ELECTRICUS ACETYLCHOLINESTERASE

Bourne, Y., Marchot, P.

(1999) J Biological Chem 274: 30370-30376

Released	1999-12-29
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Electrophorus electricus
Macromolecule	ACETYLCHOLINESTERASE (protein)

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1D1L \| pdb_00001d1l	Download File View File

CRYSTAL STRUCTURE OF CRO-F58W MUTANT

Rupert, P.B., Mollah, A.K., Mossing, M.C., Matthews, B.W.

(2000) J Mol Biology 296: 1079-1090

Released	1999-10-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lambdavirus lambda
Macromolecule	LAMBDA CRO REPRESSOR (protein)
Unique Ligands	SO4

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1EEA \| pdb_00001eea	Download File View File

Acetylcholinesterase

Raves, M.L., Giles, K., Schrag, J.D., Schmid, M.F., Phillips Jr., G.N., Wah, C., Howard, A.J., Silman, I., Sussman, J.L.

(1998) Structure And Function Of Cholinesterases And Related Proteins

Released	1999-02-01
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Electrophorus electricus
Macromolecule	PROTEIN (ACETYLCHOLINESTERASE) (protein)

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1EZW \| pdb_00001ezw	Download File View File

STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOPYRUS KANDLERI

Shima, S., Warkentin, E., Grabarse, W., Thauer, R.K., Ermler, U.

(2000) J Mol Biology 300: 935-950

Released	2000-09-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Methanopyrus kandleri
Macromolecule	COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE (protein)
Unique Ligands	CL, MG

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1FPU \| pdb_00001fpu	Download File View File

CRYSTAL STRUCTURE OF ABL KINASE DOMAIN IN COMPLEX WITH A SMALL MOLECULE INHIBITOR

Schindler, T., Bornmann, W., Pellicena, P., Miller, W.T., Clarkson, B., Kuriyan, J.

(2000) Science 289: 1938-1942

Released	2000-09-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL (protein)
Unique Ligands	PRC

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1IEP \| pdb_00001iep	Download File View File

CRYSTAL STRUCTURE OF THE C-ABL KINASE DOMAIN IN COMPLEX WITH STI-571.

Nagar, B., Bornmann, W., Schindler, T., Clarkson, B., Kuriyan, J.

(2002) Cancer Res 62: 4236-4243

Released	2001-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL (protein)
Unique Ligands	CL, STI

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1JN2 \| pdb_00001jn2	Download File View File

Crystal Structure of meso-tetrasulphonatophenyl porphyrin complexed with Concanavalin A

Goel, M., Jain, D., Kaur, K.J., Kenoth, R., Maiya, B.G., Swamy, M.J., Salunke, D.M.

(2000) J Biological Chem 276: 39277-39281

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Canavalia ensiformis
Macromolecule	Concanavalin-A (protein)
Unique Ligands	CA, MN, SFP

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1KHR \| pdb_00001khr	Download File View File

Crystal Structure of Vat(D) in Complex with Virginiamycin and Coenzyme A

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)
Unique Ligands	COA, VIR

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1KK4 \| pdb_00001kk4	Download File View File

Crystal Structure of Vat(D) in Complex with Acetyl-CoA

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)
Unique Ligands	ACO

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1KK5 \| pdb_00001kk5	Download File View File

Crystal Structure of Vat(D) (Form II)

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)

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1LI4 \| pdb_00001li4	Download File View File

Human S-adenosylhomocysteine hydrolase complexed with neplanocin

Yang, X., Hu, Y., Yin, D.H., Turner, M.A., Wang, M., Borchardt, R.T., Howell, P.L., Kuczera, K., Schowen, R.L.

(2003) Biochemistry 42: 1900-1909

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylhomocysteine hydrolase (protein)
Unique Ligands	IPA, NAD, NOC

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1LTH \| pdb_00001lth	Download File View File

T AND R STATES IN THE CRYSTALS OF BACTERIAL L-LACTATE DEHYDROGENASE REVEAL THE MECHANISM FOR ALLOSTERIC CONTROL

Iwata, S., Ohta, T.

(1994) Nat Struct Biol 1: 176-185

Released	1995-03-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bifidobacterium longum subsp. longum
Macromolecule	L-LACTATE DEHYDROGENASE (T- AND R- STATE TETRAMER COMPLEX) (protein)
Unique Ligands	FBP, NAD, OXM

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1M5Y \| pdb_00001m5y	Download File View File

Crystallographic Structure of SurA, a Molecular Chaperone that Facilitates Outer Membrane Porin Folding

Bitto, E., McKay, D.B.

(2002) Structure 10: 1489-1498

Released	2002-11-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Survival protein surA (protein)

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1MC0 \| pdb_00001mc0	Download File View File

Regulatory Segment of Mouse 3',5'-Cyclic Nucleotide Phosphodiesterase 2A, Containing the GAF A and GAF B Domains

Martinez, S., Wu, A., Glavas, N., Tang, X., Turley, S., Hol, W., Beavo, J.

(2002) Proc Natl Acad Sci U S A 99: 13260-13265

Released	2002-10-02
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Mus musculus
Macromolecule	3',5'-cyclic nucleotide phosphodiesterase 2A (protein)
Unique Ligands	PCG

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1MR7 \| pdb_00001mr7	Download File View File

Crystal Structure of Streptogramin A Acetyltransferase

Kehoe, L.E., Snidwongse, J., Courvalin, P., Rafferty, J.B., Murray, I.A.

(2003) J Biological Chem 278: 29963-29970

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	Streptogramin A Acetyltransferase (protein)

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1MR9 \| pdb_00001mr9	Download File View File

Crystal structure of Streptogramin A Acetyltransferase with acetyl-CoA bound

Kehoe, L.E., Snidwongse, J., Courvalin, P., Rafferty, J.B., Murray, I.A.

(2003) J Biological Chem 278: 29963-29970

Released	2003-08-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Enterococcus faecium
Macromolecule	Streptogramin A Acetyltransferase (protein)
Unique Ligands	ACO

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1RD5 \| pdb_00001rd5	Download File View File

Crystal structure of Tryptophan synthase alpha chain homolog BX1: a member of the chemical plant defense system

Kulik, V., Hartmann, E., Weyand, M., Frey, M., Gierl, A., Niks, D., Dunn, M.F., Schlichting, I.

(2005) J Mol Biology 352: 608-620

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Zea mays
Macromolecule	Tryptophan synthase alpha chain, chloroplast (protein)
Unique Ligands	MLA

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1RP0 \| pdb_00001rp0	Download File View File

Crystal Structure of Thi1 protein from Arabidopsis thaliana

Godoi, P.H.C., Van Sluys, M.A., Menck, C.F.M., Oliva, G.

(2006) J Biological Chem 281: 30957-30966

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	Thiazole biosynthetic enzyme (protein)
Unique Ligands	AHZ, HTO, ZN

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1SDS \| pdb_00001sds	Download File View File

Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA

Hamma, T., Ferre-D'Amare, A.

(2004) Structure 12: 893-903

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S ribosomal protein L7Ae (protein) box H/ACA sRNA (nucleic acid)
Unique Ligands	CA, K