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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mcgrath, M.E."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (12)
	Rattus rattus (5)
	Escherichia coli (1)
	Hepacivirus hominis (1)
	Hepatitis C virus JFH-1 (1)
	Hirudo medicinalis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (17)
	Riboviria (2)
	Bacteria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

	Protein (19)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (6)
	2000 - 2004 (8)
	2005 - 2009 (2)
	2015 - 2019 (2)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (1)

Symmetry Type

	Asymmetric (14)
	Cyclic (5)

SCOP Classification

	All beta proteins (16)
	Alpha and beta proteins (a+b) (4)
	Small proteins (1)

AllSelected

1 to 19 of 19 Structures

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1ANB \| pdb_00001anb	Download File View File

ANIONIC TRYPSIN MUTANT WITH SER 214 REPLACED BY GLU

Fletterick, R.J., Mcgrath, M.E.

(1992) Biochemistry 31: 3059-3064

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus rattus
Macromolecule	ANIONIC TRYPSIN (protein)
Unique Ligands	BEN, CA

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1ANC \| pdb_00001anc	Download File View File

ANIONIC TRYPSIN MUTANT WITH SER 214 REPLACED BY LYS

Fletterick, R.J., Mcgrath, M.E.

(1992) Biochemistry 31: 3059-3064

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus rattus
Macromolecule	ANIONIC TRYPSIN (protein)
Unique Ligands	BEN, CA

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1AND \| pdb_00001and	Download File View File

ANIONIC TRYPSIN MUTANT WITH ARG 96 REPLACED BY HIS

Fletterick, R.J., Mcgrath, M.E.

(1993) Biochemistry 32: 1914-1919

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus rattus
Macromolecule	ANIONIC TRYPSIN (protein)
Unique Ligands	BEN, CU

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1ANE \| pdb_00001ane	Download File View File

ANIONIC TRYPSIN WILD TYPE

Fletterick, R.J., Mcgrath, M.E.

(1993) Biochemistry 32: 1914-1919

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus rattus
Macromolecule	ANIONIC TRYPSIN (protein)
Unique Ligands	BEN

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1BRA \| pdb_00001bra	Download File View File

RELOCATING A NEGATIVE CHARGE IN THE BINDING POCKET OF TRYPSIN

Perona, J.J., Mcgrath, M.E., Fletterick, R.J.

(1993) J Mol Biology 230: 934-949

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus rattus
Macromolecule	TRYPSIN (protein)
Unique Ligands	BEN, CA

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1KLT \| pdb_00001klt	Download File View File

CRYSTAL STRUCTURE OF PMSF-TREATED HUMAN CHYMASE AT 1.9 ANGSTROMS RESOLUTION

Mcgrath, M.E.

(1997) Biochemistry 36: 14318-14324

Released	1998-12-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CHYMASE (protein)
Unique Ligands	PMS

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1MEM \| pdb_00001mem	Download File View File

Crystal structure of Cathepsin K complexed with a potent vinyl sulfone inhibitor

Mcgrath, M.E.

(1997) Nat Struct Biol 4: 105-109

Released	1998-01-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin K (protein)
Unique Ligands	0D6

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1O5A \| pdb_00001o5a	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	696, CIT

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1O5B \| pdb_00001o5b	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	CIT, ESI

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1O5C \| pdb_00001o5c	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	CIT, CR9

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1O5D \| pdb_00001o5d	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor VII (protein) Tissue factor (protein)
Unique Ligands	CR9

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1O5E \| pdb_00001o5e	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	132

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1O5F \| pdb_00001o5f	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	CR9

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1O5G \| pdb_00001o5g	Download File View File

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

(2004) J Mol Biology 344: 527-547

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	Hirudin IIIB' (protein) Prothrombin (protein)
Unique Ligands	CA, CR9, NA

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1P57 \| pdb_00001p57	Download File View File

Extracellular domain of human hepsin

Somoza, J.R., Ho, J.D., Luong, C., Sprengeler, P.A., Mortara, K., Shrader, W.D., Sperandio, D., Chan, H., McGrath, M.E., Katz, B.A.

(2003) Structure 11: 1123-1131

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Serine protease hepsin (protein)
Unique Ligands	CR4

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2ANW \| pdb_00002anw	Download File View File

Expression, crystallization and three-dimensional structure of the catalytic domain of human plasma kallikrein: Implications for structure-based design of protease inhibitors

Tang, J., Yu, C.L., Williams, S.R., Springman, E., Jeffery, D., Sprengeler, P.A., Estevez, A., Sampang, J., Shrader, W., Spencer, J.R., Young, W.B., McGrath, M.E., Katz, B.A.

(2005) J Biological Chem 280: 41077-41089

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	plasma kallikrein, light chain (protein)
Unique Ligands	BEN

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2ANY \| pdb_00002any	Download File View File

Expression, Crystallization and the Three-dimensional Structure of the Catalytic Domain of Human Plasma Kallikrein: Implications for Structure-Based Design of Protease Inhibitors

Tang, J., Yu, C.L., Williams, S.R., Springman, E., Jeffery, D., Sprengeler, P.A., Estevez, A., Sampang, J., Shrader, W., Spencer, J.R., Young, W.B., McGrath, M.E., Katz, B.A.

(2005) J Biological Chem 280: 41077-41089

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	plasma kallikrein, light chain (protein)
Unique Ligands	BEN, PO4

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4WTF \| pdb_00004wtf	Download File View File

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU

Edwards, T.E., Appleby, T.C., Mcgrath, M.E.

(2015) Science 347: 771-775

Released	2015-02-11
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Hepatitis C virus JFH-1 synthetic construct
Macromolecule	RNA-directed RNA polymerase (protein) RNA PRIMER TEMPLATE CAAAAUUU (nucleic acid)
Unique Ligands	5GS, CL, MN

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5UJ2 \| pdb_00005uj2	Download File View File

Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations and Delta8 neta hairpoin loop deletion in complex with GS-639476 (diphsohate version of GS-9813), Mn2+ and symmetrical primer template 5'-AUAAAUUU

Edwards, T.E., Fox III, D., Appleby, T.C., Murakami, E., Rey, A., McGrath, M.E.

(2017) Bioorg Med Chem Lett 27: 1840-1847

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli Hepacivirus hominis
Macromolecule	Genome polyprotein (protein) RNA (5'-R(APUPAPAPAPUPUPU)-3') (nucleic acid)
Unique Ligands	8B4, CL, MN

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ANB | pdb_00001anb

ANIONIC TRYPSIN MUTANT WITH SER 214 REPLACED BY GLU

1ANC | pdb_00001anc

ANIONIC TRYPSIN MUTANT WITH SER 214 REPLACED BY LYS

1AND | pdb_00001and

ANIONIC TRYPSIN MUTANT WITH ARG 96 REPLACED BY HIS

1ANE | pdb_00001ane

ANIONIC TRYPSIN WILD TYPE

1BRA | pdb_00001bra

RELOCATING A NEGATIVE CHARGE IN THE BINDING POCKET OF TRYPSIN

1KLT | pdb_00001klt

CRYSTAL STRUCTURE OF PMSF-TREATED HUMAN CHYMASE AT 1.9 ANGSTROMS RESOLUTION

1MEM | pdb_00001mem

Crystal structure of Cathepsin K complexed with a potent vinyl sulfone inhibitor

1O5A | pdb_00001o5a

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5B | pdb_00001o5b

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5C | pdb_00001o5c

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5D | pdb_00001o5d

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5E | pdb_00001o5e

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5F | pdb_00001o5f

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1O5G | pdb_00001o5g

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

1P57 | pdb_00001p57

Extracellular domain of human hepsin

2ANW | pdb_00002anw

Expression, crystallization and three-dimensional structure of the catalytic domain of human plasma kallikrein: Implications for structure-based design of protease inhibitors

2ANY | pdb_00002any

Expression, Crystallization and the Three-dimensional Structure of the Catalytic Domain of Human Plasma Kallikrein: Implications for Structure-Based Design of Protease Inhibitors

4WTF | pdb_00004wtf

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS AND DELTA8 BETA HAIRPIN LOOP DELETION IN COMPLEX WITH GS-639475, MN2+ AND SYMMETRICAL PRIMER TEMPLATE 5'-CAAAAUUU

5UJ2 | pdb_00005uj2

Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations and Delta8 neta hairpoin loop deletion in complex with GS-639476 (diphsohate version of GS-9813), Mn2+ and symmetrical primer template 5'-AUAAAUUU

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1ANB | pdb_00001anb

1ANC | pdb_00001anc

1AND | pdb_00001and

1ANE | pdb_00001ane

1BRA | pdb_00001bra

1KLT | pdb_00001klt

1MEM | pdb_00001mem

1O5A | pdb_00001o5a

1O5B | pdb_00001o5b

1O5C | pdb_00001o5c

1O5D | pdb_00001o5d

1O5E | pdb_00001o5e

1O5F | pdb_00001o5f

1O5G | pdb_00001o5g

1P57 | pdb_00001p57

2ANW | pdb_00002anw

2ANY | pdb_00002any

4WTF | pdb_00004wtf

5UJ2 | pdb_00005uj2