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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mori, M."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (5)
	Mycobacterium tuberculosis H37Rv (5)
	Microbacterium saccharophilum (4)
	Arabidopsis thaliana (1)
	Colletotrichum orbiculare MAFF 240422 (1)
	Mycobacteroides abscessus (1)
	Pseudomonas putida KT2440 (1)
	Salmonella enterica subsp. enterica serovar Choleraesuis (1)

Taxonomy

	Bacteria (12)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (14)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (7)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (10)
	2020 - 2024 (7)

Enzyme Classification Name

	Isomerases (5)
	Hydrolases (7)
	Lyases (5)
	Oxidoreductases (1)

Symmetry Type

Asymmetric (19)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All beta proteins (2)

AllSelected

1 to 19 of 19 Structures

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1J2F \| pdb_00001j2f	Download File View File

X-ray crystal structure of IRF-3 and its functional implications

Takahasi, K., Noda, N., Horiuchi, M., Mori, M., Okabe, Y., Fukuhara, Y., Terasawa, H., Fujita, T., Inagaki, F.

(2003) Nat Struct Biol 10: 922-927

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Interferon regulatory factor 3 (protein)

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2K4W \| pdb_00002k4w	Download File View File

The Solution Structure of the Monomeric Copper, Zinc Superoxide Dismutase from Salmonella enterica

Mori, M., Jimenez, B., Piccioli, M., Battistoni, A., Sette, M., Structural Proteomics in Europe (SPINE)

(2008) Biochemistry 47: 12954-12963

Released	2008-11-18
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Choleraesuis
Macromolecule	Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	CU1, ZN

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2L4D \| pdb_00002l4d	Download File View File

cytochrome c domain of pp3183 protein from Pseudomonas putida

Banci, L., Bertini, I., Ciofi-Baffoni, S., Kozyreva, T., Mori, M., Wang, S.

(2011) J Biol Inorg Chem 16: 391-403

Released	2011-01-26
Method	SOLUTION NMR
Organisms	Pseudomonas putida KT2440
Macromolecule	SCO1/SenC family protein/cytochrome c (protein)
Unique Ligands	HEC

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2LLH \| pdb_00002llh	Download File View File

NMR structure of Npm1_c70

Banci, L., Bertini, I., Brunori, M., Di Matteo, A., Federici, L., Gallo, A., Lo Sterzo, C., Mori, M.

(2012) J Biological Chem 287: 26539-26548

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Nucleophosmin (protein)

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2RU1 \| pdb_00002ru1	Download File View File

Solution structure of esf3

Umetsu, Y., Mori, M., Ohki, S.

(2014) Science 344: 168-172

Released	2014-04-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Uncharacterized protein (protein)

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3RTS \| pdb_00003rts	Download File View File

Human MMP-12 catalytic domain in complex withN-Hydroxy-2-(2-phenylethylsulfonamido)acetamide

Bertini, I., Calderone, V., Fragai, M., Luchinat, C., Mori, M., Nativi, C.

(2012) J Med Chem

Released	2012-07-04
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	CA, KLG, ZN

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3RTT \| pdb_00003rtt	Download File View File

Human MMP-12 catalytic domain in complex with(R)-N-Hydroxy-1-(phenethylsulfonyl)pyrrolidine-2-carboxamide

Bertini, I., Calderone, V., Fragai, M., Luchinat, C., Mori, M., Nativi, C.

(2012) J Med Chem

Released	2012-07-04
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	CA, KLH, ZN

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3WPU \| pdb_00003wpu	Download File View File

Full-length beta-fructofuranosidase from Microbacterium saccharophilum K-1

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)
Unique Ligands	GOL

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3WPV \| pdb_00003wpv	Download File View File

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/F447V/F470Y/P500S

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)
Unique Ligands	GOL

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3WPY \| pdb_00003wpy	Download File View File

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447V/P500S

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)

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3WPZ \| pdb_00003wpz	Download File View File

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447P/F470Y/P500S

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)

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4GUY \| pdb_00004guy	Download File View File

Human MMP12 catalytic domain in complex withN-Hydroxy-2-(2-(4-methoxyphenyl)ethylsulfonamido)acetamide

Calderone, V., Fragai, M., Luchinat, C., Massaro, A., Mordini, A., Mori, M.

To be published

Released	2012-09-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Macrophage metalloelastase (protein)
Unique Ligands	CA, KLJ, ZN

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6ZA4 \| pdb_00006za4	Download File View File

M. tuberculosis salicylate synthase MbtI in complex with 5-(3-cyanophenyl)furan-2-carboxylate

Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.

(2020) J Med Chem 63: 7066-7080

Released	2020-07-01
Method	X-RAY DIFFRACTION 2.092 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Salicylate synthase (protein)
Unique Ligands	CL, M83

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6ZA5 \| pdb_00006za5	Download File View File

M. tuberculosis salicylate synthase MbtI in complex with salicylate and Mg2+

Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.

(2020) J Med Chem 63: 7066-7080

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.109 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Salicylate synthase (protein)
Unique Ligands	ACT, MG, SAL, SO4

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6ZA6 \| pdb_00006za6	Download File View File

M. tuberculosis salicylate synthase MbtI in complex with Ba2+

Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.

(2020) J Med Chem 63: 7066-7080

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.804 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Salicylate synthase (protein)
Unique Ligands	BA, CL, GOL, PO4

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7EAU \| pdb_00007eau	Download File View File

SIB1, an effector of Colletotrichum orbiculare

Mori, M., Ohki, S., Kurita, J.

(2021) J Biological Chem 297: 101370-101370

Released	2021-11-03
Method	SOLUTION NMR
Organisms	Colletotrichum orbiculare MAFF 240422
Macromolecule	SIN1 (protein)

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8QC4 \| pdb_00008qc4	Download File View File

M. tuberculosis salicylate synthase MbtI in complex with 5-(3-carboxyphenyl)furan-2-carboxylic acid

Mori, M., Villa, S., Meneghetti, F., Bellinzoni, M.

(2023) Pharmaceuticals (Basel) 16:

Released	2023-11-15
Method	X-RAY DIFFRACTION 1.578 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Salicylate synthase (protein)
Unique Ligands	GOL, SO4, TXR

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8QIJ \| pdb_00008qij	Download File View File

Crystallographic Structure of a Salicylate Synthase from M. abscessus (Mab-SaS)

Cassetta, A., Covaceuszach, S., Tomaiuolo, M., Meneghetti, F., Villa, S., Mori, M., Chiarelli, L.R., Mangiatordi, G.F.

(2024) Eur J Med Chem 265: 116073-116073

Released	2024-01-31
Method	X-RAY DIFFRACTION 2.073 Å
Organisms	Mycobacteroides abscessus
Macromolecule	Putative anthranilate synthase component I TrpE2/ Salicylate synthase MbtI (protein)
Unique Ligands	GOL, PEG, SO4, TRS

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8QN5 \| pdb_00008qn5	Download File View File

M. tuberculosis salicylate synthase MbtI in complex with methyl-AMT (new crystal form)

Mori, M., Villa, S., Meneghetti, M., Bellinzoni, M.

(2023) Pharmaceuticals (Basel) 16:

Released	2023-11-15
Method	X-RAY DIFFRACTION 1.544 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Salicylate synthase (protein)
Unique Ligands	0GA, FLC, GOL, NH4

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1J2F | pdb_00001j2f

X-ray crystal structure of IRF-3 and its functional implications

2K4W | pdb_00002k4w

The Solution Structure of the Monomeric Copper, Zinc Superoxide Dismutase from Salmonella enterica

2L4D | pdb_00002l4d

cytochrome c domain of pp3183 protein from Pseudomonas putida

2LLH | pdb_00002llh

NMR structure of Npm1_c70

2RU1 | pdb_00002ru1

Solution structure of esf3

3RTS | pdb_00003rts

Human MMP-12 catalytic domain in complex withN-Hydroxy-2-(2-phenylethylsulfonamido)acetamide

3RTT | pdb_00003rtt

Human MMP-12 catalytic domain in complex with(R)-N-Hydroxy-1-(phenethylsulfonyl)pyrrolidine-2-carboxamide

3WPU | pdb_00003wpu

Full-length beta-fructofuranosidase from Microbacterium saccharophilum K-1

3WPV | pdb_00003wpv

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/F447V/F470Y/P500S

3WPY | pdb_00003wpy

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447V/P500S

3WPZ | pdb_00003wpz

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447P/F470Y/P500S

4GUY | pdb_00004guy

Human MMP12 catalytic domain in complex withN-Hydroxy-2-(2-(4-methoxyphenyl)ethylsulfonamido)acetamide

6ZA4 | pdb_00006za4

M. tuberculosis salicylate synthase MbtI in complex with 5-(3-cyanophenyl)furan-2-carboxylate

6ZA5 | pdb_00006za5

M. tuberculosis salicylate synthase MbtI in complex with salicylate and Mg2+

6ZA6 | pdb_00006za6

M. tuberculosis salicylate synthase MbtI in complex with Ba2+

7EAU | pdb_00007eau

SIB1, an effector of Colletotrichum orbiculare

8QC4 | pdb_00008qc4

M. tuberculosis salicylate synthase MbtI in complex with 5-(3-carboxyphenyl)furan-2-carboxylic acid

8QIJ | pdb_00008qij

Crystallographic Structure of a Salicylate Synthase from M. abscessus (Mab-SaS)

8QN5 | pdb_00008qn5

M. tuberculosis salicylate synthase MbtI in complex with methyl-AMT (new crystal form)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1J2F | pdb_00001j2f

2K4W | pdb_00002k4w

2L4D | pdb_00002l4d

2LLH | pdb_00002llh

2RU1 | pdb_00002ru1

3RTS | pdb_00003rts

3RTT | pdb_00003rtt

3WPU | pdb_00003wpu

3WPV | pdb_00003wpv

3WPY | pdb_00003wpy

3WPZ | pdb_00003wpz

4GUY | pdb_00004guy

6ZA4 | pdb_00006za4

6ZA5 | pdb_00006za5

6ZA6 | pdb_00006za6

7EAU | pdb_00007eau

8QC4 | pdb_00008qc4

8QIJ | pdb_00008qij

8QN5 | pdb_00008qn5