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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Murphy, J.R."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Corynebacterium diphtheriae (6)
	Acetobacter aceti 1023 (4)
	Thermoplasma acidophilum DSM 1728 (1)

Taxonomy

	Bacteria (10)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (8)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (11)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (2)
	2005 - 2009 (1)
	2015 - 2019 (5)

Enzyme Classification Name

Transferases (5)

Symmetry Type

	Cyclic (8)
	Asymmetric (3)

SCOP Classification

	All alpha proteins (4)
	Alpha and beta proteins (a/b) (4)
	Artifacts (7)
	All beta proteins (3)

AllSelected

1 to 11 of 11 Structures

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1BYM \| pdb_00001bym	Download File View File

SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF DIPHTHERIA TOXIN REPRESSOR

Wang, G., Wylie, G.P., Twigg, P.D., Caspar, D.L.D., Murphy, J.R., Logan, T.M.

(1999) Proc Natl Acad Sci U S A 96: 6119-6124

Released	1998-10-21
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	PROTEIN (DIPHTHERIA TOXIN REPRESSOR) (protein)

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1DDN \| pdb_00001ddn	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX

White, A., Ding, X., Vanderspek, J.C., Murphy, J.R., Ringe, D.

(1998) Nature 394: 502-506

Released	1998-10-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR (protein) 33 BASE DNA CONTAINING TOXIN OPERATOR (nucleic acid)
Unique Ligands	NI

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1F5T \| pdb_00001f5t	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

Chen, S., White, A., Love, J., Murphy, J.R., Ringe, D.

(2000) Biochemistry 39: 10397-10407

Released	2000-09-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein) 43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE (nucleic acid)
Unique Ligands	NI

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1QVP \| pdb_00001qvp	Download File View File

C terminal SH3-like domain from Diphtheria toxin Repressor residues 144-226.

Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Marin, V., Bhattacharya, N., Love, J.F., Murphy, J.R., Logan, T.M.

(2005) Biochemistry 44: 40-51

Released	2004-11-02
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor (protein)

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1QW1 \| pdb_00001qw1	Download File View File

Solution Structure of the C-Terminal Domain of DtxR residues 110-226

Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Love, J.F., Murphy, J.R., Logan, T.M.

(2005) Biochemistry 44: 40-51

Released	2005-03-15
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor (protein)

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2TDX \| pdb_00002tdx	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL

White, A., Ding, X., Zheng, H., Schiering, N., Ringe, D., Murphy, J.R.

(1998) Nature 394: 502-506

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR (protein)
Unique Ligands	NI

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4YBO \| pdb_00004ybo	Download File View File

Structure of Citrate Synthase from the Thermoacidophilic Euryarchaeon Thermolasma acidophilum

Murphy, J.R., Donini, S., Kappock, T.J.

(2015) Acta Crystallogr F Struct Biol Commun 71: 1292-1299

Released	2015-09-02
Method	X-RAY DIFFRACTION 2.179 Å
Organisms	Thermoplasma acidophilum DSM 1728
Macromolecule	Citrate synthase (protein)
Unique Ligands	BCT

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5DDK \| pdb_00005ddk	Download File View File

Succinyl-CoA:acetate CoA-transferase (AarCH6-N347A) in complex with CoA

Kappock, T.J., Mullins, E.A., Murphy, J.R.

(2016) Front Chem 4: 23-23

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.127 Å
Organisms	Acetobacter aceti 1023
Macromolecule	Acetyl-CoA hydrolase (protein)
Unique Ligands	CL, COA, IMD

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5DW4 \| pdb_00005dw4	Download File View File

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate

Murphy, J.R., Kappock, T.J.

(2016) Front Chem 4: 23-23

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.622 Å
Organisms	Acetobacter aceti 1023
Macromolecule	Succinyl-CoA:acetate CoA-transferase (protein)
Unique Ligands	ACT, IMD

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5DW5 \| pdb_00005dw5	Download File View File

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to the CoA analogue 3'-phosphoadenosine 5'-(O-(N-propylpantothenamide))pyrophosphate (MX)

Kappock, T.J., Murphy, J.R.

(2016) Front Chem 4: 23-23

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.656 Å
Organisms	Acetobacter aceti 1023
Macromolecule	Succinyl-CoA:acetate CoA-transferase (protein)
Unique Ligands	0T1, ACT, CL, IMD

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5DW6 \| pdb_00005dw6	Download File View File

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate and the CoA analogue 3'-phosphoadenosine 5'-(O-(N-propyl-R-pantothenamide))pyrophosphate (MX)

Kappock, T.J., Murphy, J.R.

(2016) Front Chem 4: 23-23

Released	2016-05-04
Method	X-RAY DIFFRACTION 1.548 Å
Organisms	Acetobacter aceti 1023
Macromolecule	Succinyl-CoA:acetate CoA-transferase (protein)
Unique Ligands	0T1, ACT, IMD

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1BYM | pdb_00001bym

SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF DIPHTHERIA TOXIN REPRESSOR

1DDN | pdb_00001ddn

DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX

1F5T | pdb_00001f5t

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

1QVP | pdb_00001qvp

C terminal SH3-like domain from Diphtheria toxin Repressor residues 144-226.

1QW1 | pdb_00001qw1

Solution Structure of the C-Terminal Domain of DtxR residues 110-226

2TDX | pdb_00002tdx

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL

4YBO | pdb_00004ybo

Structure of Citrate Synthase from the Thermoacidophilic Euryarchaeon Thermolasma acidophilum

5DDK | pdb_00005ddk

Succinyl-CoA:acetate CoA-transferase (AarCH6-N347A) in complex with CoA

5DW4 | pdb_00005dw4

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate

5DW5 | pdb_00005dw5

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to the CoA analogue 3'-phosphoadenosine 5'-(O-(N-propylpantothenamide))pyrophosphate (MX)

5DW6 | pdb_00005dw6

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate and the CoA analogue 3'-phosphoadenosine 5'-(O-(N-propyl-R-pantothenamide))pyrophosphate (MX)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BYM | pdb_00001bym

1DDN | pdb_00001ddn

1F5T | pdb_00001f5t

1QVP | pdb_00001qvp

1QW1 | pdb_00001qw1

2TDX | pdb_00002tdx

4YBO | pdb_00004ybo

5DDK | pdb_00005ddk

5DW4 | pdb_00005dw4

5DW5 | pdb_00005dw5

5DW6 | pdb_00005dw6