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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Packianathan, C."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Cyanidioschyzon sp. 5508 (8)
	Acidithiobacillus ferrooxidans (1)
	Bos taurus (1)
	Canis lupus familiaris (1)
	Chlamydomonas reinhardtii (1)
	Columba livia (1)
	Corynebacterium glutamicum ATCC 13032 (1)
	Hepatitis B virus subtype adyw (1)
	Meleagris gallopavo (1)
	Oryctolagus cuniculus (1)

Taxonomy

	Eukaryota (14)
	Bacteria (2)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (6)
	2015 - 2019 (6)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (1)

Symmetry Type

	Asymmetric (11)
	Cyclic (6)

SCOP Classification

All alpha proteins (5)

AllSelected

1 to 17 of 17 Structures

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2QLS \| pdb_00002qls	Download File View File

crystal structure of hemoglobin from dog (Canis familiaris) at 3.5 Angstrom resolution

Packianathan, C., Sundaresan, S., Palani, K., Neeelagandan, K., Ponnuswamy, M.N.

To be published

Released	2008-07-22
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Canis lupus familiaris
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM

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2QMB \| pdb_00002qmb	Download File View File

Structure determination of haemoglobin from Turkey(meleagris gallopavo) at 2.8 Angstrom resolution

Packianathan, C., Sundaresan, S., Ponnuswamy, M.N.

To be published

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Meleagris gallopavo
Macromolecule	Hemoglobin beta chain (protein) Hemoglobin subunit alpha-A (protein)
Unique Ligands	HEM, OXY

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2R80 \| pdb_00002r80	Download File View File

Pigeon Hemoglobin (OXY form)

Ponnuswamy, M.N., Packianathan, C., Sundaresan, S., Neelagandan, K., Palani, K., Muller, J.J., Heinemann, U.

To be published

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Columba livia
Macromolecule	Hemoglobin subunit alpha-A (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM, OXY

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2RAO \| pdb_00002rao	Download File View File

X ray crystal structure of rabbit hemoglobin (oxy form) at 2.0 angstrom resolution

Sundaresan, S., Packianathan, C., Neelagandan, K., Ponnuswamy, M.N.

To be published

Released	2008-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Hemoglobin subunit alpha-1/2 (protein) Hemoglobin subunit beta-1/2 (protein)
Unique Ligands	HEM, OXY

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3KXS \| pdb_00003kxs	Download File View File

Crystal structure of HBV capsid mutant dimer (oxy form), strain adyw

Packianathan, C., Katen, S.P., Zlotnick, A.

(2010) J Virol 84: 1607-1615

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Hepatitis B virus subtype adyw
Macromolecule	Capsid protein (protein)

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4FR0 \| pdb_00004fr0	Download File View File

ArsM arsenic(III) S-adenosylmethionine methyltransferase with SAM

Ajees, A.A., Marapakala, K., Packianathan, C., Sankaran, B., Rosen, B.P.

(2012) Biochemistry 51: 5476-5485

Released	2012-07-11
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	SAM

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4FS8 \| pdb_00004fs8	Download File View File

The structure of an As(III) S-adenosylmethionine methyltransferase: insights into the mechanism of arsenic biotransformation

Ajees, A.A., Marapakala, K., Packianathan, C., Sankaran, B., Rosen, B.P.

(2012) Biochemistry 51: 5476-5485

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA

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4FSD \| pdb_00004fsd	Download File View File

ArsM arsenic(III) S-adenosylmethionine methyltransferase with As(III)

Ajees, A.A., Marapakala, K., Packianathan, C., Sankaran, B., Rosen, B.P.

(2012) Biochemistry 51: 5476-5485

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	ARS, CA, CL

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4KW7 \| pdb_00004kw7	Download File View File

The structure of an As(III) S-adenosylmethionine methyltransferase with Phenylarsine oxide(PAO)

Packianathan, C., Marapakala, K., Ajees, A.A., Kandavelu, P., Rosen, B.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 505-515

Released	2014-05-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA, PA0

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4RSR \| pdb_00004rsr	Download File View File

ArsM arsenic(III) S-adenosylmethionine methyltransferase with trivalent phenyl arsencial derivative-Roxarsone

Packianathan, C., Marapakala, K., Ajees, A.A., Kandavelu, P., Rosen, B.P.

(2015) Acta Crystallogr D Biol Crystallogr 71: 505-515

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA, DTT, MG, NA, RXO

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5EG5 \| pdb_00005eg5	Download File View File

As (III) S-adenosylmethyltransferase cysteine mutant C72A bound Phenylarsine oxide (PhAs(III) in the arsenic binding site

Packianathan, C., Marapakala, K., Kandavelu, P., Rosen, B.P.

To be published

Released	2016-11-02
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA, PA0

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5EVJ \| pdb_00005evj	Download File View File

X-ray crystal structure of CrArsM, an arsenic (III) S-adenosylmethionine methyltransferase from Chlamydomonas reinhardtii

Packianathan, C., Kandavelu, P., Sankaran, B., Rosen, B.P.

To be published

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Arsenite methyltransferase (protein)
Unique Ligands	NA

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5JX7 \| pdb_00005jx7	Download File View File

Cysteine mutant (C224A) structure of As (III) S-adenosyl methyltransferase

Packianathan, C., Marapakala, K., Ajees, A.A., Kandavelu, P., Sankaran, B., Rosen, B.P.

To be published

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	CA

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6CX6 \| pdb_00006cx6	Download File View File

The structure of an As(III) S-adenosylmethionine methyltransferase with As(III) and S-adenosyl-L-homocysteine (SAH)

Packianathan, C., Kandavelu, P., Rosen, B.P.

(2018) Biochemistry 57: 4083-4092

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Cyanidioschyzon sp. 5508
Macromolecule	Arsenic methyltransferase (protein)
Unique Ligands	ARS, SAH

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6J05 \| pdb_00006j05	Download File View File

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

Prabaharan, C., Kandavelu, P., Packianathan, C., Rosen, P.B., Thiyagarajan, S.

(2019) J Struct Biol 207: 209-217

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Acidithiobacillus ferrooxidans
Macromolecule	Transcriptional regulator ArsR (protein)
Unique Ligands	ARS, NA

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6J0E \| pdb_00006j0e	Download File View File

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

Prabaharan, C., Kandavelu, P., Packianathan, C., Rosen, P.B., Thiyagarajan, S.

(2019) J Struct Biol 207: 209-217

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Arsenic responsive repressor ArsR (protein)
Unique Ligands	ARS, MPD

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7JWX \| pdb_00007jwx	Download File View File

Crystal Structure of Trypsin Bound O-methyl Benzamidine

Packianathan, C., Laganowsky, A.

(2022) Org Biomol Chem 20: 2075-2080

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Bos taurus
Macromolecule	Cationic trypsin (protein)
Unique Ligands	CA, CL, GOL, SO4, VN1

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2QLS | pdb_00002qls

crystal structure of hemoglobin from dog (Canis familiaris) at 3.5 Angstrom resolution

2QMB | pdb_00002qmb

Structure determination of haemoglobin from Turkey(meleagris gallopavo) at 2.8 Angstrom resolution

2R80 | pdb_00002r80

Pigeon Hemoglobin (OXY form)

2RAO | pdb_00002rao

X ray crystal structure of rabbit hemoglobin (oxy form) at 2.0 angstrom resolution

3KXS | pdb_00003kxs

Crystal structure of HBV capsid mutant dimer (oxy form), strain adyw

4FR0 | pdb_00004fr0

ArsM arsenic(III) S-adenosylmethionine methyltransferase with SAM

4FS8 | pdb_00004fs8

The structure of an As(III) S-adenosylmethionine methyltransferase: insights into the mechanism of arsenic biotransformation

4FSD | pdb_00004fsd

ArsM arsenic(III) S-adenosylmethionine methyltransferase with As(III)

4KW7 | pdb_00004kw7

The structure of an As(III) S-adenosylmethionine methyltransferase with Phenylarsine oxide(PAO)

4RSR | pdb_00004rsr

ArsM arsenic(III) S-adenosylmethionine methyltransferase with trivalent phenyl arsencial derivative-Roxarsone

5EG5 | pdb_00005eg5

As (III) S-adenosylmethyltransferase cysteine mutant C72A bound Phenylarsine oxide (PhAs(III) in the arsenic binding site

5EVJ | pdb_00005evj

X-ray crystal structure of CrArsM, an arsenic (III) S-adenosylmethionine methyltransferase from Chlamydomonas reinhardtii

5JX7 | pdb_00005jx7

Cysteine mutant (C224A) structure of As (III) S-adenosyl methyltransferase

6CX6 | pdb_00006cx6

The structure of an As(III) S-adenosylmethionine methyltransferase with As(III) and S-adenosyl-L-homocysteine (SAH)

6J05 | pdb_00006j05

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

6J0E | pdb_00006j0e

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

7JWX | pdb_00007jwx

Crystal Structure of Trypsin Bound O-methyl Benzamidine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2QLS | pdb_00002qls

2QMB | pdb_00002qmb

2R80 | pdb_00002r80

2RAO | pdb_00002rao

3KXS | pdb_00003kxs

4FR0 | pdb_00004fr0

4FS8 | pdb_00004fs8

4FSD | pdb_00004fsd

4KW7 | pdb_00004kw7

4RSR | pdb_00004rsr

5EG5 | pdb_00005eg5

5EVJ | pdb_00005evj

5JX7 | pdb_00005jx7

6CX6 | pdb_00006cx6

6J05 | pdb_00006j05

6J0E | pdb_00006j0e

7JWX | pdb_00007jwx