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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Polikarpov, I."

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Search Summary

This query matches 135 Structures.

Refinements

Structure Determination Methodology

experimental (135)

Scientific Name of Source Organism

	Homo sapiens (42)
	Bacillus licheniformis (8)
	Trichoderma harzianum (8)
	Xylella fastidiosa 9a5c (6)
	Human immunodeficiency virus 1 (4)
	Trichoderma reesei (4)
	unidentified (4)
	Aspergillus awamori (3)
	Bacillus licheniformis DSM 13 = ATCC 14580 (3)
	Bifidobacterium bifidum S17 (3)

More...

Taxonomy

	Eukaryota (83)
	Bacteria (44)
	Riboviria (4)
	unclassified sequences (4)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (134)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (135)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (61)
	2.0 - 2.5 (38)
	2.5 - 3.0 (27)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (28)
	2005 - 2009 (23)
	2010 - 2014 (30)
	2015 - 2019 (28)
	2020 - 2024 (25)

Enzyme Classification Name

	Hydrolases (53)
	Lyases (6)
	Oxidoreductases (5)
	Transferases (5)
	Isomerases (3)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (82)
	Cyclic (35)
	Dihedral (26)

SCOP Classification

	All beta proteins (50)
	Alpha and beta proteins (a/b) (25)
	All alpha proteins (24)
	Alpha and beta proteins (a+b) (3)
	Artifacts (8)
	Small proteins (2)

AllSelected

1 to 25 of 135 Structures

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1B7D \| pdb_00001b7d	Download File View File

NEUROTOXIN (TS1) FROM BRAZILIAN SCORPION TITYUS SERRULATUS

Polikarpov, I., Sanches Jr., M.S., Marangoni, S., Toyama, M.H., Teplyakov, A.

(1999) J Mol Biology 290: 175-184

Released	1999-07-22
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Tityus serrulatus
Macromolecule	PROTEIN (NEUROTOXIN TS1) (protein)
Unique Ligands	PO4

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1B8E \| pdb_00001b8e	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE BOVINE BETA-LACTOGLOBULIN (ISOFORMS A AND B) IN ORTHOROMBIC SPACE GROUP

Oliveira, K.M.G., Sawyer, L., Polikarpov, I.

(2001) Eur J Biochem 268: 477-483

Released	2001-05-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (BETA-LACTOGLOBULIN) (protein)

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1DI0 \| pdb_00001di0	Download File View File

CRYSTAL STRUCTURE OF LUMAZINE SYNTHASE FROM BRUCELLA ABORTUS

Braden, B.C., Velikovsky, C.A., Cauerhff, A.A., Polikarpov, I., Goldbaum, F.A.

(2000) J Mol Biology 297: 1031-1036

Released	2000-04-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Brucella abortus
Macromolecule	LUMAZINE SYNTHASE (protein)
Unique Ligands	PO4

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1DN0 \| pdb_00001dn0	Download File View File

STRUCTURE OF THE FAB FRAGMENT FROM A HUMAN IGM COLD AGGLUTININ

Cauerhff, A., Braden, B., Carvalho, J.G., Leoni, J., Polikarpov, I., Goldbaum, F.

(2000) J Immunol 165: 6422-6428

Released	2001-01-24
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	IGM-KAPPA COLD AGGLUTININ (HEAVY CHAIN) (protein) IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) (protein)

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1GMZ \| pdb_00001gmz	Download File View File

Crystal structure of the D49 phospholipase A2 piratoxin III from Bothrops pirajai.

Rigden, D.J., Lee, W.H., Polikarpov, I.

(2003) Acta Crystallogr D Biol Crystallogr 59: 255

Released	2001-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bothrops pirajai
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	IPA

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1GQN \| pdb_00001gqn	Download File View File

Native 3-dehydroquinase from Salmonella typhi

Lee, W.-H., Perles, L.A., Nagem, R.A.P., Polikarpov, I., Sawyer, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 798

Released	2003-11-20
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-DEHYDROQUINATE DEHYDRATASE (protein)

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1HWU \| pdb_00001hwu	Download File View File

STRUCTURE OF PII PROTEIN FROM HERBASPIRILLUM SEROPEDICAE

Benelli, E.M., Buck, M., Polikarpov, I., De Souza, E.M., Cruz, L.M., Pedrosa, F.O.

(2002) Eur J Biochem 269: 3296-3303

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Herbaspirillum seropedicae
Macromolecule	PII PROTEIN (protein)

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1IG8 \| pdb_00001ig8	Download File View File

Crystal Structure of Yeast Hexokinase PII with the correct amino acid sequence

Kuser, P.R., Krauchenco, S., Antunes, O.A., Polikarpov, I.

(2000) J Biological Chem 275: 20814-20821

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	hexokinase PII (protein)
Unique Ligands	SO4

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1JV4 \| pdb_00001jv4	Download File View File

Crystal structure of recombinant major mouse urinary protein (rmup) at 1.75 A resolution

Kuser, P.R., Franzoni, L., Ferrari, E., Spisni, A., Polikarpov, I.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1863-1869

Released	2001-12-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	Major urinary protein 2 (protein)
Unique Ligands	CD, TZL

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1L9W \| pdb_00001l9w	Download File View File

CRYSTAL STRUCTURE OF 3-DEHYDROQUINASE FROM SALMONELLA TYPHI COMPLEXED WITH REACTION PRODUCT

Lee, W.H., Perles, L.A., Nagem, R.A.P., Shrive, A.K., Hawkins, A., Sawyer, L., Polikarpov, I.

(2002) Acta Crystallogr D Biol Crystallogr 58: 798-804

Released	2003-03-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-dehydroquinate dehydratase aroD (protein)
Unique Ligands	DHS

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1M4R \| pdb_00001m4r	Download File View File

CRYSTAL STRUCTURE OF RECOMBINANT HUMAN INTERLEUKIN-22

Nagem, R.A.P., Colau, D., Dumoutier, L., Renauld, J.-C., Ogata, C., Polikarpov, I.

(2002) Structure 10: 1051-1062

Released	2003-07-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-22 (protein)

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1NNS \| pdb_00001nns	Download File View File

L-asparaginase of E. coli in C2 space group and 1.95 A resolution

Sanches, M., Barbosa, J.A.R.G., de Oliveira, R.T., Neto, J.A.A., Polikarpov, I.

(2003) Acta Crystallogr D Biol Crystallogr 59: 416-422

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	L-asparaginase II (protein)
Unique Ligands	ASP

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1NPI \| pdb_00001npi	Download File View File

Tityus Serrulatus Neurotoxin (Ts1) at atomic resolution

Pinheiro, C.B., Marangoni, S., Toyama, M.H., Polikarpov, I.

(2003) Acta Crystallogr D Biol Crystallogr 59: 405-415

Released	2003-02-25
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Tityus serrulatus
Macromolecule	Toxin VII (protein)
Unique Ligands	PO4

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1QFE \| pdb_00001qfe	Download File View File

THE STRUCTURE OF TYPE I 3-DEHYDROQUINATE DEHYDRATASE FROM SALMONELLA TYPHI

Shrive, A.K., Polikarpov, I., Sawyer, L., Coggins, J.R., Hawkins, A.R.

(1999) Nat Struct Biol 6: 521-525

Released	2000-04-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	PROTEIN (3-DEHYDROQUINATE DEHYDRATASE) (protein)
Unique Ligands	DHS

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1QG5 \| pdb_00001qg5	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE BOVINE BETA-LACTOGLOBULIN (ISOFORM A)

Oliveira, K.M.G., Sawyer, L., Polikarpov, I.

(2001) Eur J Biochem 268: 477-483

Released	2001-04-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	BETA-LACTOGLOBULIN (protein)

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1QLL \| pdb_00001qll	Download File View File

Piratoxin-II (Prtx-II) - a K49 PLA2 from Bothrops pirajai

Lee, W.-H., Polikarpov, I.

(2001) Biochemistry 40: 28

Released	2000-09-07
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Bothrops pirajai
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	TDA

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1QLR \| pdb_00001qlr	Download File View File

CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF A HUMAN MONOCLONAL IgM COLD AGGLUTININ

Carvalho, J.G., Cauerhff, A., Goldbaum, F., Leoni, J., Polikarpov, I.

(2000) J Immunol 165: 6422-6428

Released	2000-09-14
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Homo sapiens
Macromolecule	IGM FAB REGION IV-J(H4)-C (KAU COLD AGGLUTININ) (protein) IGM KAPPA CHAIN V-III (KAU COLD AGGLUTININ) (protein)
Unique branched monosaccharides	FUC, NAG

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1R2R \| pdb_00001r2r	Download File View File

CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE

Aparicio, R., Ferreira, S.T., Polikarpov, I.

(2003) J Mol Biology 334: 1023-1041

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	DMS, MG, TRS

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1R2S \| pdb_00001r2s	Download File View File

CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE

Aparicio, R., Ferreira, S.T., Polikarpov, I.

(2003) J Mol Biology 334: 1023-1041

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Triosephosphate isomerase (protein)

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1R2T \| pdb_00001r2t	Download File View File

CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE

Aparicio, R., Ferreira, S.T., Polikarpov, I.

(2003) J Mol Biology 334: 1023-1041

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Triosephosphate isomerase (protein)

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1R8N \| pdb_00001r8n	Download File View File

The Crystal Structure of the Kunitz (STI) Type Inhibitor from Seeds of Delonix regia

Krauchenco, S., Pando, S.C., Marangoni, S., Polikarpov, I.

(2003) Biochem Biophys Res Commun 312: 1303-1308

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Delonix regia
Macromolecule	Kunitz trypsin inhibitor (protein)

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1R8O \| pdb_00001r8o	Download File View File

Crystal structure of an unusual Kunitz-type trypsin inhibitor from Copaifera langsdorffii seeds

Krauchenco, S., Nagem, R.A.P., da Silva, J.A., Marangoni, S., Polikarpov, I.

(2004) Biochimie 86: 167-172

Released	2004-05-25
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Copaifera langsdorffii
Macromolecule	Kunitz trypsin inhibitor (protein)

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1SZN \| pdb_00001szn	Download File View File

THE STRUCTURE OF ALPHA-GALACTOSIDASE

Golubev, A.M., Nagem, R.A.P., Brando Neto, J.R., Neustroev, K.N., Eneyskaya, E.V., Kulminskaya, A.A., Shabalin, K.A., Savel'ev, A.N., Polikarpov, I.

(2004) J Mol Biology 339: 413-422

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Trichoderma reesei
Macromolecule	alpha-galactosidase (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BMA, MAN, NAG

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1T0O \| pdb_00001t0o	Download File View File

The structure of alpha-galactosidase from Trichoderma reesei complexed with beta-D-galactose

Golubev, A.M., Nagem, R.A.P., Brandao Neto, J.R., Neustroev, K.N., Eneyskaya, E.V., Kulminskaya, A.A., Shabalin, K.A., Savel'ev, A.N., Polikarpov, I.

(2004) J Mol Biology 339: 413-422

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Trichoderma reesei
Macromolecule	alpha-galactosidase (protein)
Unique Ligands	GAL
Unique branched monosaccharides	BMA, MAN, NAG

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1TG7 \| pdb_00001tg7	Download File View File

Native structure of beta-galactosidase from Penicillium sp.

Rojas, A.L., Nagem, R.A.P., Neustroev, K.N., Arand, M., Adamska, M., Eneyskaya, E.V., Kulminskaya, A.A., Garratt, R.C., Golubev, A.M., Polikarpov, I.

(2004) J Mol Biology 343: 1281-1292

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Penicillium sp.
Macromolecule	beta-galactosidase (protein)
Unique Ligands	EDO, NA, NAG, PO4
Unique branched monosaccharides	BMA, MAN, NAG

1 to 25 of 135 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B7D | pdb_00001b7d

1B8E | pdb_00001b8e

1DI0 | pdb_00001di0

1DN0 | pdb_00001dn0

1GMZ | pdb_00001gmz

1GQN | pdb_00001gqn

1HWU | pdb_00001hwu

1IG8 | pdb_00001ig8

1JV4 | pdb_00001jv4

1L9W | pdb_00001l9w

1M4R | pdb_00001m4r

1NNS | pdb_00001nns

1NPI | pdb_00001npi

1QFE | pdb_00001qfe

1QG5 | pdb_00001qg5

1QLL | pdb_00001qll

1QLR | pdb_00001qlr

1R2R | pdb_00001r2r

1R2S | pdb_00001r2s

1R2T | pdb_00001r2t

1R8N | pdb_00001r8n

1R8O | pdb_00001r8o

1SZN | pdb_00001szn

1T0O | pdb_00001t0o

1TG7 | pdb_00001tg7