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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sankaran, B."

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Search Summary

This query matches 256 Structures.

Refinements

Structure Determination Methodology

experimental (256)

Scientific Name of Source Organism

	Homo sapiens (45)
	synthetic construct (43)
	Escherichia coli (25)
	Klebsiella pneumoniae (17)
	Severe acute respiratory syndrome coronavirus 2 (16)
	Norovirus (10)
	Thermomonospora curvata DSM 43183 (9)
	Influenza A virus (A/California/04/2009(H1N1)) (8)
	Aplysia californica (7)
	Klebsiella pneumoniae subsp. pneumoniae HS11286 (6)

More...

Taxonomy

	Bacteria (84)
	Eukaryota (75)
	Riboviria (57)
	other sequences (43)
	Archaea (1)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (256)

Polymer Entity Type

	Protein (256)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (43)
	1.5 - 2.0 (93)
	2.0 - 2.5 (72)
	2.5 - 3.0 (34)
	3.0 - 3.5 (11)
	3.5 - 4.0 (3)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (58)
	2015 - 2019 (96)
	2020 - 2024 (88)
	2025 - 2029 (10)

Enzyme Classification Name

	Hydrolases (99)
	Transferases (33)
	Lyases (14)
	Oxidoreductases (9)
	Ligases (1)

Symmetry Type

	Asymmetric (155)
	Cyclic (106)
	Dihedral (8)
	Tetrahedral (3)
	Icosahedral (1)

SCOP Classification

	All beta proteins (50)
	Multi-domain proteins (alpha and beta) (43)
	Artifacts (27)
	Alpha and beta proteins (a/b) (10)
	Alpha and beta proteins (a+b) (7)
	Small proteins (3)
	Coiled coil proteins (2)
	All alpha proteins (2)

AllSelected

1 to 25 of 256 Structures

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2PTM \| pdb_00002ptm	Download File View File

Structure and rearrangements in the carboxy-terminal region of SpIH channels

Flynn, G.E., Black, K.D., Islas, L.D., Sankaran, B., Zagotta, W.N.

(2007) Structure 15: 671-682

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Strongylocentrotus purpuratus
Macromolecule	Hyperpolarization-activated (Ih) channel (protein)
Unique Ligands	CMP, NCO

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2Q0A \| pdb_00002q0a	Download File View File

Structure and rearrangements in the carboxy-terminal region of SpIH channels

Flynn, G.E., Black, K.D., Islas, L.D., Sankaran, B., Zagotta, W.N.

(2007) Structure 15: 671-682

Released	2007-06-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (protein)
Unique Ligands	PCG

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3HVV \| pdb_00003hvv	Download File View File

Escherichia coli Thiol peroxidase (Tpx) peroxidatic cysteine to serine mutant (C61S)

Hall, A., Sankaran, B., Karplus, P.A.

(2009) J Mol Biology 393: 867-881

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12
Macromolecule	Thiol peroxidase (protein)

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3HVX \| pdb_00003hvx	Download File View File

Escherichia coli Thiol peroxidase (Tpx) resolving cysteine to serine mutant (C95S) with an intermolecular disulfide bond

Hall, A., Sankaran, B., Karplus, P.A.

(2009) J Mol Biology 393: 867-881

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Escherichia coli K-12
Macromolecule	Thiol peroxidase (protein)
Unique Ligands	CL

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3LT0 \| pdb_00003lt0	Download File View File

Enoyl-ACP Reductase from Plasmodium falciparum (PfENR) in complex with triclosan variant T1

Maity, K., Bhargav, S.P., Sankaran, B., Surolia, N., Surolia, A., Suguna, K.

(2010) IUBMB Life 62: 467-476

Released	2010-06-16
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Plasmodium falciparum
Macromolecule	Enoyl-ACP reductase (protein)
Unique Ligands	FT1, NAD

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3LT1 \| pdb_00003lt1	Download File View File

Enoyl-ACP Reductase from Plasmodium falciparum (PfENR) in complex with triclosan variant T2

Maity, K., Bhargav, S.P., Sankaran, B., Surolia, N., Surolia, A., Suguna, K.

(2010) IUBMB Life 62: 467-476

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Plasmodium falciparum
Macromolecule	Enoyl-ACP reductase (protein)
Unique Ligands	FT2, NAD

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3MYU \| pdb_00003myu	Download File View File

Mycoplasma genitalium MG289

Sippel, K.H., Boehlein, S.K., Govindasamy, L., Namiki, K., Satai, Y., Quirit, J.G., Agbandje-McKenna, M., Goodison, S., Rosser, C.J., Sankaran, B., McKenna, R.

(2011) Proteins 79: 528-536

Released	2010-10-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycoplasmoides genitalium
Macromolecule	High affinity transport system protein p37 (protein)
Unique Ligands	ACT, VIB

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3NMD \| pdb_00003nmd	Download File View File

Crystal structure of the leucine zipper domain of cGMP dependent protein kinase I beta

Kim, C., Casteel, D.E., Smith-Nguyen, E.V., Sankaran, B., Berkeley Structural Genomics Center (BSGC)

(2010) J Biological Chem 285: 32684-32688

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.272 Å
Organisms	Homo sapiens
Macromolecule	cGMP Dependent PRotein Kinase (protein)
Unique Ligands	GOL, HEZ

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3OF1 \| pdb_00003of1	Download File View File

Crystal Structure of Bcy1, the Yeast Regulatory Subunit of PKA

Rinaldi, J., Wu, J., Yang, J., Ralston, C.Y., Sankaran, B., Moreno, S., Taylor, S.S.

(2010) Structure 18: 1471-1482

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	cAMP-dependent protein kinase regulatory subunit (protein)
Unique Ligands	CMP

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3PMO \| pdb_00003pmo	Download File View File

The structure of LpxD from Pseudomonas aeruginosa at 1.3 A resolution

Badger, J., Chie-Leon, B., Logan, C., Sridhar, V., Sankaran, B., Zwart, P.H., Nienaber, V.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 749-752

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (protein)
Unique Ligands	CL, EDO

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3Q6L \| pdb_00003q6l	Download File View File

Crystal Structure of Human Adipocyte Fatty Acid Binding Protein (FABP4) at 1.4 Ang. Resolution

Prasad, G.S., Carney, D., Small, V., Sankaran, B., Zwart, P.H.

To be published

Released	2011-01-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, adipocyte (protein)

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3QHY \| pdb_00003qhy	Download File View File

Structural, thermodynamic and kinetic analysis of the picomolar binding affinity interaction of the beta-lactamase inhibitor protein-II (BLIP-II) with class A beta-lactamases

Brown, N.G., Chow, D.C., Sankaran, B., Zwart, P., Prasad, B.V.V., Palzkill, T., Berkeley Structural Genomics Center (BSGC)

(2011) J Biological Chem 286: 32723-32735

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bacillus anthracis Streptomyces exfoliatus
Macromolecule	Beta-lactamase (protein) Beta-lactamase inhibitory protein II (protein)

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3QI0 \| pdb_00003qi0	Download File View File

Structural, thermodynamic and kinetic analysis of the picomolar binding affinity interaction of the beta-lactamase inhibitor protein-II (BLIP-II) with class A beta-lactamases

Brown, N.G., Chow, D.C., Sankaran, B., Zwart, P., Prasad, B.V.V., Palzkill, T.

(2011) J Biological Chem 286: 32723-32735

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces exfoliatus
Macromolecule	Beta-lactamase inhibitory protein II (protein)
Unique Ligands	SO4

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3SEJ \| pdb_00003sej	Download File View File

Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to Secretor Lewis HBGA (LeB)

Shanker, S., Choi, J.-M., Sankaran, B., Atmar, R.L., Estes, M.K., Prasad, B.V.V.

(2011) J Virol 85: 8635-8645

Released	2011-07-13
Method	X-RAY DIFFRACTION 3.041 Å
Organisms	Norovirus Hu/GII.4/2004/NL
Macromolecule	Capsid (protein)
Unique branched monosaccharides	BGC, FUC, GAL, NAG

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3SI9 \| pdb_00003si9	Download File View File

Crystal structure of Dihydrodipicolinate Synthase from Bartonella Henselae

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Staker, B.L., Abendroth, J., Sankaran, B.

(2016) Acta Crystallogr F Struct Biol Commun 72: 2-9

Released	2011-06-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bartonella henselae
Macromolecule	Dihydrodipicolinate synthase (protein)
Unique Ligands	EDO

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3SJP \| pdb_00003sjp	Download File View File

Structural characterization of a GII.4 2004 norovirus variant (TCH05)

Shanker, S., Choi, J.-M., Sankaran, B., Atmar, R.L., Estes, M.K., Prasad, B.V.V.

(2011) J Virol 85: 8635-8645

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Norovirus Hu/GII.4/2004/NL
Macromolecule	Capsid (protein)
Unique Ligands	ZN

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3SKB \| pdb_00003skb	Download File View File

Structural characterization of a GII.4 2004 norovirus variant (TCH05)

Shanker, S., Choi, J.-M., Sankaran, B., Atmar, R.L., Estes, M.K., Prasad, B.V.V.

(2011) J Virol 85: 8635-8645

Released	2011-07-13
Method	X-RAY DIFFRACTION 3.22 Å
Organisms	Norovirus Hu/GII.4/2004/NL
Macromolecule	Capsid (protein)

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3SLD \| pdb_00003sld	Download File View File

Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to A trisaccharide

Shanker, S., Choi, J.-M., Sankaran, B., Atmar, R.L., Estes, M.K., Prasad, B.V.V.

(2011) J Virol 85: 8635-8645

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.679 Å
Organisms	Norovirus Hu/GII.4/2004/NL
Macromolecule	Capsid (protein)
Unique branched monosaccharides	A2G, FUC, GAL

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3SLN \| pdb_00003sln	Download File View File

Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to H pentasaccharide

Shanker, S., Choi, J.-M., Sankaran, B., Atmar, R.L., Estes, M.K., Prasad, B.V.V.

(2011) J Virol 85: 8635-8645

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.841 Å
Organisms	Norovirus Hu/GII.4/2004/NL
Macromolecule	Capsid (protein)
Unique branched monosaccharides	BGC, FUC, GAL, NAG

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3STH \| pdb_00003sth	Download File View File

Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Toxoplasma gondii

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Staker, B.L., Edwards, T.E., Sankaran, B.

(2017) Mol Microbiol 103: 618-634

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Toxoplasma gondii
Macromolecule	Glyceraldehyde-3-phosphate dehydrogenase (protein)
Unique Ligands	EDO, NA, NAD, UNX

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3TMH \| pdb_00003tmh	Download File View File

Crystal structure of dual-specific A-kinase anchoring protein 2 in complex with cAMP-dependent protein kinase A type II alpha and PDZK1

Sarma, G.N., Phan, R.H., Sankaran, B., Taylor, S.S.

To be published

Released	2012-09-05
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	A-kinase anchor protein 10, mitochondrial (protein) Na(+)/H(+) exchange regulatory cofactor NHE-RF3 (protein) cAMP-dependent protein kinase type II-alpha regulatory subunit (protein)

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3U0A \| pdb_00003u0a	Download File View File

Crystal structure of an Acyl-CoA thioesterase II TesB2 from Mycobacterium marinum

Arakaki, T.L., Staker, B.L., Clifton, M.C., Sankaran, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2015) Tuberculosis (Edinb) 95: 142-148

Released	2011-10-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium marinum M
Macromolecule	Acyl-CoA thioesterase II TesB2 (protein)
Unique Ligands	GOL, NA, SO4

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4DV8 \| pdb_00004dv8	Download File View File

Anthrax Lethal Factor metalloproteinase in complex with the Hydroxamic acid based small molecule PT8421

Margosiak, S.A., Sankaran, B.

(2012) Bioorg Med Chem Lett 22: 2242

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.632 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	0LX, MLI, ZN

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4E6T \| pdb_00004e6t	Download File View File

Structure of LpxA from Acinetobacter baumannii at 1.8A resolution (P212121 form)

Badger, J., Chie-Leon, B., Logan, C., Sridhar, V., Sankaran, B., Zwart, P.H., Nienaber, V.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 1477-1481

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acinetobacter baumannii
Macromolecule	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (protein)
Unique Ligands	FLC

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4E6U \| pdb_00004e6u	Download File View File

Structure of LpxA from Acinetobacter baumannii at 1.4A resolution (P63 form)

Badger, J., Chie-Leon, B., Logan, C., Sridhar, V., Sankaran, B., Zwart, P.H., Nienaber, V.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 1477-1481

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Acinetobacter baumannii
Macromolecule	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (protein)
Unique Ligands	EDO, SO4

1 to 25 of 256 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2PTM | pdb_00002ptm

2Q0A | pdb_00002q0a

3HVV | pdb_00003hvv

3HVX | pdb_00003hvx

3LT0 | pdb_00003lt0

3LT1 | pdb_00003lt1

3MYU | pdb_00003myu

3NMD | pdb_00003nmd

3OF1 | pdb_00003of1

3PMO | pdb_00003pmo

3Q6L | pdb_00003q6l

3QHY | pdb_00003qhy

3QI0 | pdb_00003qi0

3SEJ | pdb_00003sej

3SI9 | pdb_00003si9

3SJP | pdb_00003sjp

3SKB | pdb_00003skb

3SLD | pdb_00003sld

3SLN | pdb_00003sln

3STH | pdb_00003sth

3TMH | pdb_00003tmh

3U0A | pdb_00003u0a

4DV8 | pdb_00004dv8

4E6T | pdb_00004e6t

4E6U | pdb_00004e6u