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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Shi, G."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Escherichia coli K-12 (8)
	Escherichia coli (4)
	Homo sapiens (3)
	Francisella tularensis subsp. tularensis SCHU S4 (2)
	Bacillus anthracis (1)

Taxonomy

	Bacteria (15)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (17)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (8)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (2)
	2020 - 2024 (6)

Enzyme Classification Name

Transferases (16)

Symmetry Type

Asymmetric (18)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	All beta proteins (2)

AllSelected

1 to 18 of 18 Structures

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1EQ0 \| pdb_00001eq0	Download File View File

SOLUTION STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH MGAMPPCP

Shi, G., Yan, H.

(2001) J Biological Chem 276: 40274-40281

Released	2001-11-07
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)

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1HKA \| pdb_00001hka	Download File View File

6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE

Xiao, B., Shi, G., Chen, X., Yan, H., Ji, X.

(1999) Structure 7: 489-496

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)

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1TMM \| pdb_00001tmm	Download File View File

Crystal structure of ternary complex of E.coli HPPK(W89A) with MGAMPCPP and 6-Hydroxymethylpterin

Blaszczyk, J., Li, Y., Wu, Y., Shi, G., Ji, X., Yan, H.

(2005) Biochemistry 44: 8590-8599

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ACT, APC, CL, GOL, HHR, MG

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1U7F \| pdb_00001u7f	Download File View File

Crystal Structure of the phosphorylated Smad3/Smad4 heterotrimeric complex

Chacko, B.M., Qin, B.Y., Tiwari, A., Shi, G., Lam, S., Hayward, L.J., de Caestecker, M., Lin, K.

(2004) Mol Cell 15: 813-823

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Mothers against decapentaplegic homolog 3 (protein) Mothers against decapentaplegic homolog 4 (protein)

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1U7V \| pdb_00001u7v	Download File View File

Crystal Structure of the phosphorylated Smad2/Smad4 heterotrimeric complex

Chacko, B.M., Qin, B.Y., Tiwari, A., Shi, G., Lam, S., Hayward, L.J., de Caestecker, M., Lin, K.

(2004) Mol Cell 15: 813-823

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Mothers against decapentaplegic homolog 2 (protein) Mothers against decapentaplegic homolog 4 (protein)

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3UD5 \| pdb_00003ud5	Download File View File

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A

Shaw, G., Shi, G., Ji, X.

(2012) Bioorg Med Chem 20: 47-57

Released	2012-01-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	EDO, J1A

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3UDE \| pdb_00003ude	Download File View File

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B

Shaw, G., Shi, G., Ji, X.

(2012) Bioorg Med Chem 20: 47-57

Released	2012-01-04
Method	X-RAY DIFFRACTION 1.881 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ACT, J1B

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3UDV \| pdb_00003udv	Download File View File

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1C

Shaw, G., Shi, G., Ji, X.

(2012) Bioorg Med Chem 20: 47-57

Released	2012-01-04
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ACT, J1C

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4F7V \| pdb_00004f7v	Download File View File

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1D (HP26)

Shaw, G., Shi, G., Ji, X.

(2012) Bioorg Med Chem 20: 4303-4309

Released	2012-07-11
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	J1D

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4PZV \| pdb_00004pzv	Download File View File

Crystal structure of Francisella tularensis HPPK-DHPS in complex with bisubstrate analog HPPK inhibitor J1D

Shaw, G.X., Shi, G., Ji, X.

(2014) FEBS J 281: 4123-4137

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.704 Å
Organisms	Francisella tularensis subsp. tularensis SCHU S4
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase (protein)
Unique Ligands	EDO, J1D

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6AN4 \| pdb_00006an4	Download File View File

Crystal structure of Escherichia coli HPPK in complex with bisubstrate analogue inhibitor HP-39 (J1F)

Shaw, G.X., Shi, G., Ji, X.

To be published

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	CL, J1F

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6AN6 \| pdb_00006an6	Download File View File

Crystal structure of Escherichia coli HPPK in complex with bisubstrate analogue inhibitor HP-72

Shaw, G.X., Shi, G., Ji, X.

To be published

Released	2018-08-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	J1I

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7KDO \| pdb_00007kdo	Download File View File

Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-73

Shaw, G.X., Shi, G., Ji, X.

(2021) Bioorg Med Chem 29: 115847-115847

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	H73

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7KDR \| pdb_00007kdr	Download File View File

Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-75

Shaw, G.X., Shi, G., Ji, X.

(2021) Bioorg Med Chem 29: 115847-115847

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.488 Å
Organisms	Escherichia coli K-12
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	CL, EDO, J1L

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8SIF \| pdb_00008sif	Download File View File

Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-101

Shaw, G.X., Shi, G., Ji, X.

To be published

Released	2024-07-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ZX4

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8SK1 \| pdb_00008sk1	Download File View File

Bacillus anthracis HPPK in complex with bisubstrate inhibitor HP-73

Shaw, G.X., Tropea, J.E., Shi, G., Waugh, D.S., Ji, X.

To be published

Released	2024-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus anthracis
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (protein)
Unique Ligands	H73

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8SL9 \| pdb_00008sl9	Download File View File

Crystal structure of Francisella tularensis HPPK-DHPS in complex with HPPK inhibitor HP-73

Shaw, G.X., Shi, G., Cherry, S., Needle, D., Tropea, J.E., Waugh, D.S., Ji, X.

To be published

Released	2024-05-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Francisella tularensis subsp. tularensis SCHU S4
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	CL, EDO, H73

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8T0S \| pdb_00008t0s	Download File View File

Crystal structure of UBE2G2 adduct with phenethyl isothiocyanate (PEITC) at the Cys48 position

Wang, C., Shaw, G.X., Shi, G., Ji, X.

To be published

Released	2024-06-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin-conjugating enzyme E2 G2 (protein)
Unique Ligands	EDO

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1EQ0 | pdb_00001eq0

SOLUTION STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH MGAMPPCP

1HKA | pdb_00001hka

6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE

1TMM | pdb_00001tmm

Crystal structure of ternary complex of E.coli HPPK(W89A) with MGAMPCPP and 6-Hydroxymethylpterin

1U7F | pdb_00001u7f

Crystal Structure of the phosphorylated Smad3/Smad4 heterotrimeric complex

1U7V | pdb_00001u7v

Crystal Structure of the phosphorylated Smad2/Smad4 heterotrimeric complex

3UD5 | pdb_00003ud5

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A

3UDE | pdb_00003ude

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B

3UDV | pdb_00003udv

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1C

4F7V | pdb_00004f7v

Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1D (HP26)

4PZV | pdb_00004pzv

Crystal structure of Francisella tularensis HPPK-DHPS in complex with bisubstrate analog HPPK inhibitor J1D

6AN4 | pdb_00006an4

Crystal structure of Escherichia coli HPPK in complex with bisubstrate analogue inhibitor HP-39 (J1F)

6AN6 | pdb_00006an6

Crystal structure of Escherichia coli HPPK in complex with bisubstrate analogue inhibitor HP-72

7KDO | pdb_00007kdo

Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-73

7KDR | pdb_00007kdr

Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-75

8SIF | pdb_00008sif

Crystal structure of Escherichia coli HPPK in complex with bisubstrate inhibitor HP-101

8SK1 | pdb_00008sk1

Bacillus anthracis HPPK in complex with bisubstrate inhibitor HP-73

8SL9 | pdb_00008sl9

Crystal structure of Francisella tularensis HPPK-DHPS in complex with HPPK inhibitor HP-73

8T0S | pdb_00008t0s

Crystal structure of UBE2G2 adduct with phenethyl isothiocyanate (PEITC) at the Cys48 position

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EQ0 | pdb_00001eq0

1HKA | pdb_00001hka

1TMM | pdb_00001tmm

1U7F | pdb_00001u7f

1U7V | pdb_00001u7v

3UD5 | pdb_00003ud5

3UDE | pdb_00003ude

3UDV | pdb_00003udv

4F7V | pdb_00004f7v

4PZV | pdb_00004pzv

6AN4 | pdb_00006an4

6AN6 | pdb_00006an6

7KDO | pdb_00007kdo

7KDR | pdb_00007kdr

8SIF | pdb_00008sif

8SK1 | pdb_00008sk1

8SL9 | pdb_00008sl9

8T0S | pdb_00008t0s