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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Skordalakes, E."

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Homo sapiens (15)
	Escherichia coli (6)
	Hirudo medicinalis (6)
	Tribolium castaneum (5)
	Saccharomyces cerevisiae (4)
	Kluyveromyces lactis (1)
	Saccharomyces cerevisiae S288C (1)
	Streptomyces coelicolor A3(2) (1)
	Takifugu rubripes (1)
	Tetrahymena thermophila (1)

Taxonomy

	Eukaryota (28)
	Bacteria (7)

Experimental Method

X-RAY DIFFRACTION (35)

Polymer Entity Type

	Protein (35)
	RNA (5)
	NA-hybrid (2)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (9)
	2.5 - 3.0 (10)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (7)
	2005 - 2009 (7)
	2010 - 2014 (8)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (13)
	Transferases (9)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (29)
	Cyclic (7)
	Helical (2)

SCOP Classification

	All beta proteins (13)
	Alpha and beta proteins (a/b) (6)
	All alpha proteins (5)
	Alpha and beta proteins (a+b) (1)
	Artifacts (2)

AllSelected

1 to 25 of 35 Structures

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1A3B \| pdb_00001a3b	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG1

Skordalakes, E., Elgendy, S., Dodson, G., Goodwin, C.A., Green, D., Scully, M.F., Freyssinet, J.H., Kakkar, V.V., Deadman, J.

(1998) Biochemistry 37: 14420-14427

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) Hirudin (protein)
Unique Ligands	T29

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1A3E \| pdb_00001a3e	Download File View File

COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG2

Skordalakes, E., Elgendy, S., Goodwin, C.A., Green, D., Scullly, M.F., Kakkar, V.V., Freyssinet, J.M., Dodson, G., Deadman, J.

(1998) Biochemistry 37: 14420-14427

Released	1998-06-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) Hirudin (protein)
Unique Ligands	T16

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1AI8 \| pdb_00001ai8	Download File View File

HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH THE EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROMPG

Skordalakes, E., Dodson, G., Elgendy, S., Goodwin, C.A., Green, D., Tyrrel, R., Scully, M.F., Freyssinet, J., Kakkar, V.V., Deadman, J.

(1992) Protein Sci 1: 426-471

Released	1997-10-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUDIN IIIB (protein)
Unique Ligands	T42

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1AIX \| pdb_00001aix	Download File View File

HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROVAL

Skordalakes, E., Dodson, G., Elgendy, S., Goodwin, C.A., Green, D., Tyrrel, R., Scully, M.F., Freyssinet, J., Kakkar, V.V., Deadman, J.

(1992) Protein Sci 1: 426-471

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein)
Unique Ligands	T19

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1H8D \| pdb_00001h8d	Download File View File

X-ray structure of the human alpha-thrombin complex with a tripeptide phosphonate inhibitor.

Skordalakes, E., Dodson, G.G., Green, D., Deadman, J.

(2001) J Mol Biology 311: 549

Released	2001-02-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN I (protein) THROMBIN (protein)
Unique Ligands	PHW

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1H8I \| pdb_00001h8i	Download File View File

X-ray crystal structure of human alpha-thrombin with a tripeptide phosphonate inhibitor.

Skordalakes, E., Dodson, G.G., Green, D., Deadman, J.

(2001) J Mol Biology 311: 549

Released	2001-03-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	HIRUDIN I (protein) THROMBIN (protein)
Unique Ligands	PHV

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1PV4 \| pdb_00001pv4	Download File View File

X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA

Skordalakes, E., Berger, J.M.

(2003) Cell 114: 135-146

Released	2003-07-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Transcription termination factor rho (protein) 5'-D(PCPC)-3' (nucleic acid)

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1PVO \| pdb_00001pvo	Download File View File

X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP

Skordalakes, E., Berger, J.M.

(2003) Cell 114: 135-146

Released	2003-07-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Transcription termination factor rho (protein) 5'-R(PUPC)-3' (nucleic acid)
Unique Ligands	ANP

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1ROC \| pdb_00001roc	Download File View File

Crystal structure of the histone deposition protein Asf1

Daganzo, S.M., Erzberger, J.P., Lam, W.M., Skordalakes, E., Zhang, R., Franco, A.A., Brill, S.J., Adams, P.D., Berger, J.M., Kaufman, P.D.

(2003) Curr Biol 13: 2148-2158

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Anti-silencing protein 1 (protein)
Unique Ligands	BR

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1XPO \| pdb_00001xpo	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2005-02-08
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, BCM, MG

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1XPR \| pdb_00001xpr	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB)

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2004-11-02
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, FB, MG

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1XPU \| pdb_00001xpu	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB)

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2004-11-02
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, FPD, MG

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2HT1 \| pdb_00002ht1	Download File View File

The closed ring structure of the Rho transcription termination factor in complex with nucleic acid in the motor domains

Skordalakes, E., Berger, J.M.

(2006) Cell 127: 553-564

Released	2006-11-14
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Escherichia coli
Macromolecule	Transcription termination factor rho (protein) 5'-R(UPC)-3' (nucleic acid) 5'-R(UPCPUPCP*U)-3' (nucleic acid)
Unique Ligands	SO4

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2Q17 \| pdb_00002q17	Download File View File

Formylglycine Generating Enzyme from Streptomyces coelicolor

Carlson, B.L., Ballister, E.R., Skordalakes, E., King, D.S., Breidenbach, M.A., Gilmore, S.A., Berger, J.M., Bertozzi, C.R.

(2008) J Biological Chem 283: 20117-20125

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	formylglycine generating enzyme (protein)
Unique Ligands	CA

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2R4G \| pdb_00002r4g	Download File View File

The high resolution structure of the RNA-binding domain of telomerase

Rouda, S., Skordalakes, E.

(2007) Structure 15: 1403-1412

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Tetrahymena thermophila
Macromolecule	Telomerase reverse transcriptase (protein)
Unique Ligands	BR

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3DU5 \| pdb_00003du5	Download File View File

Structure of the catalytic subunit of telomerase, TERT

Skordalakes, E.

(2008) Nature 455: 633-637

Released	2008-08-26
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Tribolium castaneum
Macromolecule	Telomerase reverse transcriptase (protein)

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3DU6 \| pdb_00003du6	Download File View File

Structure of the catalytic subunit of telomerase, TERT

Skordalakes, E.

(2008) Nature 455: 633-637

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Tribolium castaneum
Macromolecule	Telomerase reverse transcriptase (protein)

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3FK3 \| pdb_00003fk3	Download File View File

Structure of the Yeats Domain, Yaf9

Wang, A.Y., Schulze, J.M., Skordalakes, E., Berger, J.M., Rine, J., Kobor, M.S.

(2009) Proc Natl Acad Sci U S A 106: 21573-21578

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein AF-9 homolog (protein)

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3KYL \| pdb_00003kyl	Download File View File

Structure of the catalytic subunit of telomerase bound to its RNA template and telomeric DNA

Skordalakes, E.

(2010) Nat Struct Mol Biol 17: 513-518

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Tribolium castaneum
Macromolecule	Telomerase reverse transcriptase (protein) DNA/RNA (5'-R(CPUPGPAPCPCPUPGPAPC)-D(PTPTPCPGPGPTPCPAPGPGPTPCPAPG)-3') (hybrid)
Unique Ligands	MG

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3LAW \| pdb_00003law	Download File View File

Structure of GTP-bound L129F mutant Rab7

McCray, B.A., Skordalakes, E., Taylor, J.P.

(2010) Hum Mol Genet 19: 1033-1047

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-7a (protein)
Unique Ligands	GNP, MG

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3NWS \| pdb_00003nws	Download File View File

Crystal structure of the N-terminal domain of the yeast telomere-binding and telomerase regulatory protein Cdc13

Mitchell, M.T., Smith, J.S., Mason, M., Harper, S., Speicher, D.W., Johnson, F.B., Skordalakes, E.

(2010) Mol Cell Biol 30: 5325-5334

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 13 (protein)

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3NWT \| pdb_00003nwt	Download File View File

Crystal structure of the N-terminal domain of the yeast telomere-binding and telomerase regulatory protein Cdc13

Mitchell, M.T., Smith, J.S., Mason, M., Harper, S., Speicher, D.W., Johnson, F.B., Skordalakes, E.

(2010) Mol Cell Biol 30: 5325-5334

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 13 (protein)

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4HCE \| pdb_00004hce	Download File View File

Crystal structure of the telomeric Saccharomyces cerevisiae Cdc13 OB2 domain

Mason, M., Wannat, J.J., Harper, S., Schultz, D.C., Speicher, D.W., Johnson, F.B., Skordalakes, E.

(2013) Structure 21: 109-120

Released	2012-11-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cell division control protein 13 (protein)

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4JOI \| pdb_00004joi	Download File View File

Crystal structure of the human telomeric Stn1-Ten1 complex

Bryan, C., Rice, C., Harkisheimer, M., Schultz, D., Skordalakes, E.

(2013) PLoS One 8: e66756-e66756

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	CST complex subunit STN1 (protein) CST complex subunit TEN1 (protein)