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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Song, J.X."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Severe acute respiratory syndrome-related coronavirus (9)
	Homo sapiens (5)
	Shrimp white spot syndrome virus (2)

Taxonomy

	Riboviria (9)
	Eukaryota (5)
	Viruses incertae sedis (2)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (8)

Release Date

	2005 - 2009 (12)
	2010 - 2014 (4)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (4)
	Ligases (1)

Symmetry Type

	Cyclic (8)
	Asymmetric (8)

SCOP Classification

	All beta proteins (13)
	Artifacts (2)

AllSelected

1 to 16 of 16 Structures

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2G31 \| pdb_00002g31	Download File View File

Human Nogo-A functional domain: nogo60

Li, M.F., Liu, J.X., Song, J.X.

(2006) Protein Sci 15: 1835-1841

Released	2006-08-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Reticulon-4 (protein)

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2GJ2 \| pdb_00002gj2	Download File View File

Crystal Structure of VP9 from White Spot Syndrome Virus

Liu, Y., Wu, J.L., Song, J.X., Sivaraman, J., Hew, C.L.

(2006) J Virol 80: 10419-10427

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Shrimp white spot syndrome virus
Macromolecule	wsv230 (protein)
Unique Ligands	CD

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2GJI \| pdb_00002gji	Download File View File

NMR solution structure of VP9 from White Spot Syndrome Virus

Liu, Y., Wu, J.L., Song, J.X., Sivaraman, J., Hew, C.L.

(2006) J Virol 80: 10419-10427

Released	2006-09-19
Method	SOLUTION NMR
Organisms	Shrimp white spot syndrome virus
Macromolecule	wsv230 (protein)

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2OP7 \| pdb_00002op7	Download File View File

WW4

Qin, H.N., Li, M.F., Pu, H., Sankaran, S., Ahmed, S., Song, J.X.

To be published

Released	2007-12-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEDD4-like E3 ubiquitin-protein ligase WWP1 (protein)

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2QCY \| pdb_00002qcy	Download File View File

Crystal Structure of a monomeric form of Severe Acute Respiratory Syndrome (SARS) 3C-like protease mutant

Shi, J.H., Sivaraman, J., Song, J.X.

(2008) J Virol 82: 4620-4629

Released	2008-03-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3CKH \| pdb_00003ckh	Download File View File

Crystal structure of Eph A4 receptor

Shi, J.H., Song, J.X.

(2008) J Biological Chem 283: 29473-29484

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 4 (protein)

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3E91 \| pdb_00003e91	Download File View File

Crystal structure of SARS-CoV Mpro mutant in P21 at pH6.9

Shi, J.H., Jayaraman, S., Song, J.X.

To be published

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3EA7 \| pdb_00003ea7	Download File View File

Crystal structure of SARS-CoV main protease triple mutant STI/A in space group P21

Shi, J.H., Jayaraman, S., Song, J.X.

To be published

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3EA8 \| pdb_00003ea8	Download File View File

Crystal structure of SARS-CoV main protease triple mutant STI/A in space group C2

Shi, J.H., Jayaraman, S., Song, J.X.

To be published

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3EA9 \| pdb_00003ea9	Download File View File

Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with one molecule in one asymmetric unit

Shi, J.H., Jayaraman, S., Song, J.X.

To be published

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3EAJ \| pdb_00003eaj	Download File View File

Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with two molecules in one asymmetric unit

Shi, J.H., Jayaraman, S., Song, J.X.

To be published

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3GXU \| pdb_00003gxu	Download File View File

Crystal structure of Eph receptor and ephrin complex

Qin, H.N., Song, J.X.

(2009) J Biological Chem

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 4 (protein) Ephrin-B2 (protein)

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3M3S \| pdb_00003m3s	Download File View File

Crystal structure of SARS-COV main protease Asn214Ala mutant with authorize N-terminus

Shi, J.H., Song, J.X.

To be published

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3M3T \| pdb_00003m3t	Download File View File

SARS-CoV main protease monomeric Arg298Ala mutant with N-terminal additional residues (Gly-Ser)

Shi, J.H., Song, J.X.

To be published

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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3M3V \| pdb_00003m3v	Download File View File

SARS-CoV main protease triple mutant STI/A with two N-terminal additional residue (Gly-Ser)

Shi, J.H., Song, J.X.

To be published

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)

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4ET7 \| pdb_00004et7	Download File View File

Crystal structure of Eph receptor 5

Shi, J.H., Zhu, W.L., Song, J.X.

To be published

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ephrin type-A receptor 5 (protein)

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2G31 | pdb_00002g31

Human Nogo-A functional domain: nogo60

2GJ2 | pdb_00002gj2

Crystal Structure of VP9 from White Spot Syndrome Virus

2GJI | pdb_00002gji

NMR solution structure of VP9 from White Spot Syndrome Virus

2OP7 | pdb_00002op7

WW4

2QCY | pdb_00002qcy

Crystal Structure of a monomeric form of Severe Acute Respiratory Syndrome (SARS) 3C-like protease mutant

3CKH | pdb_00003ckh

Crystal structure of Eph A4 receptor

3E91 | pdb_00003e91

Crystal structure of SARS-CoV Mpro mutant in P21 at pH6.9

3EA7 | pdb_00003ea7

Crystal structure of SARS-CoV main protease triple mutant STI/A in space group P21

3EA8 | pdb_00003ea8

Crystal structure of SARS-CoV main protease triple mutant STI/A in space group C2

3EA9 | pdb_00003ea9

Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with one molecule in one asymmetric unit

3EAJ | pdb_00003eaj

Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with two molecules in one asymmetric unit

3GXU | pdb_00003gxu

Crystal structure of Eph receptor and ephrin complex

3M3S | pdb_00003m3s

Crystal structure of SARS-COV main protease Asn214Ala mutant with authorize N-terminus

3M3T | pdb_00003m3t

SARS-CoV main protease monomeric Arg298Ala mutant with N-terminal additional residues (Gly-Ser)

3M3V | pdb_00003m3v

SARS-CoV main protease triple mutant STI/A with two N-terminal additional residue (Gly-Ser)

4ET7 | pdb_00004et7

Crystal structure of Eph receptor 5

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2G31 | pdb_00002g31

2GJ2 | pdb_00002gj2

2GJI | pdb_00002gji

2OP7 | pdb_00002op7

2QCY | pdb_00002qcy

3CKH | pdb_00003ckh

3E91 | pdb_00003e91

3EA7 | pdb_00003ea7

3EA8 | pdb_00003ea8

3EA9 | pdb_00003ea9

3EAJ | pdb_00003eaj

3GXU | pdb_00003gxu

3M3S | pdb_00003m3s

3M3T | pdb_00003m3t

3M3V | pdb_00003m3v

4ET7 | pdb_00004et7