RCSB PDB: Search

1AF1 \| pdb_00001af1	Download File View File

THE SOLUTION NMR STRUCTURE OF AN R-STYRENE OXIDE ADDUCT AT THE N2 POSITION OF GUANINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 11-13 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE

Zegar, I.S., Stone, M.P.

(1996) Biochemistry 35: 4334-4348

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPCPCPAPCPCPTPGPCPC)-3') (nucleic acid) DNA (5'-D(GPGPCPAPGPGSRPTPGPGPTPG)-3') (nucleic acid)

Explore in 3D

1AFZ \| pdb_00001afz	Download File View File

SOLUTION NMR STRUCTURE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE FROM THE HUMAN N-RAS PROTOONCOGENE ENCODING FOR AMINO ACIDS 11-13 OF P21, MINIMIZED AVERAGE STRUCTURE

Zegar, I.S., Stone, M.P.

(1996) Chem Res Toxicol 9: 114-125

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPCPCPAPCPCPTPGPCPC)-3') (nucleic acid) DNA (5'-D(GPGPCPAPGPGPTPGPGPTPG)-3') (nucleic acid)

Explore in 3D

1AG3 \| pdb_00001ag3	Download File View File

DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION, NMR, MINIMIZED AVERAGE STRUCTURE

Weisenseel, J.P., Stone, M.P.

(1995) Biochemistry 34: 50-64

Released	1997-07-07
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APTPCPGPCPPPCPGPGPCPAPTPG)-3') (nucleic acid) DNA (5'-D(CPAPTPGPCPCPGPCPGPAPT)-3') (nucleic acid)

Explore in 3D

1AG5 \| pdb_00001ag5	Download File View File

THE SOLUTION STRUCTURE OF AN AFLATOXIN B1 EPOXIDE ADDUCT AT THE N7 POSITION OF GUANINE OPPOSITE AN ADENINE IN THE COMPLEMENTARY STRAND OF AN OLIGODEOXYNUCLEOTIDE DUPLEX, NMR, MINIMIZED AVERAGE STRUCTURE

Johnson, D.S., Stone, M.P.

(1995) Biochemistry 34: 14037-14050

Released	1997-09-17
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPCPAPTPCPGPAPTPCPC)-3') (nucleic acid) DNA (5'-D(GPGPAPTPCPAPGPAPTPGP*G)-3') (nucleic acid)
Unique Ligands	AFN

Explore in 3D

1AGH \| pdb_00001agh	Download File View File

THE SOLUTION STRUCTURE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE DUPLEX CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, NMR, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1995) Chem Res Toxicol 8: 821-832

Released	1997-09-17
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPAPAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

Explore in 3D

1AGK \| pdb_00001agk	Download File View File

THE SOLUTION NMR STRUCTURE OF AN (R)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE SECOND POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1995) Biochemistry 34: 14021-14036

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPRPAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

Explore in 3D

1AGO \| pdb_00001ago	Download File View File

THE SOLUTION NMR STRUCTURE OF AN (S)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE THIRD POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1996) Biochemistry 35: 7316-7329

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPAPYPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

Explore in 3D

1AGU \| pdb_00001agu	Download File View File

THE SOLUTION NMR STRUCTURE OF THE C10R ADDUCT OF BENZO[A]PYRENE-DIOL-EPOXIDE AT THE N6 POSITION OF ADENINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE

Zegar, I.S., Stone, M.P.

(1996) Biochemistry 35: 6212-6224

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPEPAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

Explore in 3D

1AGZ \| pdb_00001agz	Download File View File

THE SOLUTION NMR STRUCTURE OF AN (R)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE THIRD POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1995) Biochemistry 34: 14021-14036

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPAPRPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

Explore in 3D

1AP1 \| pdb_00001ap1	Download File View File

THE SOLUTION NMR STRUCTURE OF AN S-STYRENE OXIDE ADDUCT AT THE N2 POSITION OF GUANINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 11-13 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE

Setayesh, F.R., Stone, M.P.

(1998) Chem Res Toxicol 11: 766-777

Released	1998-07-22
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPAPCPCPAPCPCPTPGPCPC)-3') (nucleic acid) DNA (5'-D(GPGPCPAPGSSPGPTPGPGPTPG)-3') (nucleic acid)

Explore in 3D

1DJD \| pdb_00001djd	Download File View File

THE SOLUTION STRUCTURE OF A NON-BAY REGION 11R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 14820-14832

Released	1999-12-16
Method	SOLUTION NMR
Macromolecule	DNA(5'-D(CTGTGTATCTATATGTATATG)-3') (nucleic acid) DNA(5'-D(CTTTTTCTTTTTGTTTCTCTG)-3') (nucleic acid)
Unique Ligands	TBT

Explore in 3D

1DL4 \| pdb_00001dl4	Download File View File

THE SOLUTION STRUCTURE OF A BAY-REGION 1S-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Kim, H.-Y., Tamura, P.J., Harris, C.M., Harris, T.M., Stone, M.P.

(1999) Biochemistry 38: 16045-16057

Released	2000-01-12
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCP(BZA)APAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)
Unique Ligands	BZA

Explore in 3D

1HM1 \| pdb_00001hm1	Download File View File

THE SOLUTION NMR STRUCTURE OF A THERMALLY STABLE FAPY ADDUCT OF AFLATOXIN B1 IN AN OLIGODEOXYNUCLEOTIDE DUPLEX REFINED FROM DISTANCE RESTRAINED MOLECULAR DYNAMICS SIMULATED ANNEALING, MINIMIZED AVERAGE STRUCTURE

Mao, H., Deng, Z., Wang, F., Harris, T.M., Stone, M.P.

(1998) Biochemistry 37: 4374-4387

Released	1998-10-14
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPTPAPTP(FAG)PAPTPTPCPA)-3') (nucleic acid) DNA (5'-D(TPGPAPAPTPCPAPTPAP*G)-3') (nucleic acid)

Explore in 3D

1HZ2 \| pdb_00001hz2	Download File View File

SOLUTION NMR STRUCTURE OF SELF-COMPLEMENTARY DUPLEX 5'-D(AGGCGCCT)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G. MODEL OF A MALONDIALDEHYDE CROSSLINK

Dooley, P.A., Tsarouhtsis, D., Korbel, G.A., Nechev, L.V., Shearer, J., Zegar, I.S., Harris, C.M., Stone, M.P., Harris, T.M.

(2001) J Am Chem Soc 123: 1730-1739

Released	2001-02-07
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APGPGPCPGPCPCPT)-3') (nucleic acid)
Unique Ligands	TME

Explore in 3D

1I7V \| pdb_00001i7v	Download File View File

THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE

Li, Z., Tamura, P.J., Wilkinson, A.S., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 6743-6755

Released	2001-03-28
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCPAP(BZA)APGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)
Unique Ligands	BZA

Explore in 3D

1K29 \| pdb_00001k29	Download File View File

Solution Structure of a DNA Duplex Containing M1G Opposite a 2 Base Pair Deletion

Schnetz-Boutaud, N.C., Saleh, S., Marnett, L.J., Stone, M.P.

(2001) Biochemistry 40: 15638-15649

Released	2002-01-16
Method	SOLUTION NMR
Macromolecule	5'-D(APTPCPGPCP(M1G)PCPGPGPCPAPTPG)-3' (nucleic acid) 5'-D(CPAPTPGPCPCPGPCPGPAPT)-3' (nucleic acid)

Explore in 3D

1K5E \| pdb_00001k5e	Download File View File

Solution Structure of R-styrene Adduct in the Ras61 Sequence

Hennard, C., Finneman, J., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 9780-9791

Released	2002-01-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(ABR)PAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)

Explore in 3D

1K5F \| pdb_00001k5f	Download File View File

SOLUTION STRUCTURE OF THE S-STYRENE ADDUCT IN THE RAS61 SEQUENCE

Hennard, C., Finneman, J., Harris, C.M., Harris, T.M., Stone, M.P.

(2001) Biochemistry 40: 9780-9791

Released	2002-01-23
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPGPAPCP(ABS)PAPGPAPAPG)-3' (nucleic acid) 5'-D(CPTPTPCPTPTPGPTPCPCPG)-3' (nucleic acid)

Explore in 3D

1LA8 \| pdb_00001la8	Download File View File

Solution structure of the DNA hairpin 13-mer CGCGGTGTCCGCG

Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.

(2002) Chem Res Toxicol 15: 140-152

Released	2002-04-17
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPGPTPGPTPCPCPGPCP*G)-3' (nucleic acid)

Explore in 3D

1LAE \| pdb_00001lae	Download File View File

Solution Structure of the DNA 13-mer Hairpin CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct at the Seventh Position

Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.

(2002) Chem Res Toxicol 15: 140-152

Released	2002-04-17
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPGPTP(P)PTPCPCPGPCP*G)-3' (nucleic acid)

Explore in 3D

1LAI \| pdb_00001lai	Download File View File

Solution Structure of the B-DNA Duplex CGCGGTGTCCGCG.

Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.

(2002) Chem Res Toxicol 15: 127-139

Released	2002-04-17
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPGPAPCPAPCPCPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPGPGPTPGPTPCPCPGPCPG)-3' (nucleic acid)

Explore in 3D

1LAQ \| pdb_00001laq	Download File View File

Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C2' Endo Conformation.

Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.

(2002) Chem Res Toxicol 15: 127-139

Released	2002-04-17
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPGPAP(DNR)PAPCPCPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPGPGPTP(P)PTPCPCPGPCPG)-3' (nucleic acid)

Explore in 3D

1LAS \| pdb_00001las	Download File View File

Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C3' Endo Conformation.

Weisenseel, J.P., Reddy, G.R., Marnett, L.J., Stone, M.P.

(2002) Chem Res Toxicol 15: 127-139

Released	2002-04-17
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPGPAP(DNR)PAPCPCPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPGPGPTP(P)PTPCPCPGPCPG)-3' (nucleic acid)

Explore in 3D

1LUH \| pdb_00001luh	Download File View File

SOLUTION NMR STRUCTURE OF SELF-COMPLIMENTARY DUPLEX 5'-D(TCCGCGGA)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G

Dooley, P.D., Zhang, M., Korbel, G.A., Nechev, L.V., Harris, C.M., Stone, M.P., Harris, T.M.

(2003) J Am Chem Soc 125: 62-72

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(TPCPCP(TME)GPCPGPGPA)-3' (nucleic acid)
Unique Ligands	TME

Explore in 3D

1MK6 \| pdb_00001mk6	Download File View File

SOLUTION STRUCTURE OF THE 8,9-DIHYDRO-8-(N7-GUANYL)-9-HYDROXY-AFLATOXIN B1 ADDUCT MISPAIRED WITH DEOXYADENOSINE

Giri, I., Johnston, D.S., Stone, M.P.

(2002) Biochemistry 41: 5462-5472

Released	2002-10-16
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	5'-D(APCPAPTPCPGPAPTPCPT)-3' (nucleic acid) 5'-D(APGPAPTPAPGPAPTPGPT)-3' (nucleic acid)
Unique Ligands	AFN

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AF1 | pdb_00001af1

1AFZ | pdb_00001afz

1AG3 | pdb_00001ag3

1AG5 | pdb_00001ag5

1AGH | pdb_00001agh

1AGK | pdb_00001agk

1AGO | pdb_00001ago

1AGU | pdb_00001agu

1AGZ | pdb_00001agz

1AP1 | pdb_00001ap1

1DJD | pdb_00001djd

1DL4 | pdb_00001dl4

1HM1 | pdb_00001hm1

1HZ2 | pdb_00001hz2

1I7V | pdb_00001i7v

1K29 | pdb_00001k29

1K5E | pdb_00001k5e

1K5F | pdb_00001k5f

1LA8 | pdb_00001la8

1LAE | pdb_00001lae

1LAI | pdb_00001lai

1LAQ | pdb_00001laq

1LAS | pdb_00001las

1LUH | pdb_00001luh

1MK6 | pdb_00001mk6