RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Subramanian, V."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 51 Structures.

Refinements

Structure Determination Methodology

experimental (51)

Scientific Name of Source Organism

	Homo sapiens (34)
	Severe acute respiratory syndrome-related coronavirus (4)
	Mus musculus (3)
	SARS coronavirus Tor2 (3)
	Danio rerio (2)
	Gallus gallus (1)
	Methanosarcina mazei Go1 (1)
	Oryctolagus cuniculus (1)
	Rattus norvegicus (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (43)
	Riboviria (7)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (45)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (51)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (14)
	2.0 - 2.5 (16)
	2.5 - 3.0 (9)

Release Date

	2005 - 2009 (16)
	2010 - 2014 (16)
	2015 - 2019 (19)

Enzyme Classification Name

	Hydrolases (40)
	Transferases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (42)
	Cyclic (9)

SCOP Classification

	Alpha and beta proteins (a+b) (41)
	All beta proteins (7)
	Alpha and beta proteins (a/b) (2)
	Artifacts (3)
	Small proteins (1)

AllSelected

1 to 25 of 51 Structures

Page 1 of 3

Sort by

Explore in 3D

2ACF \| pdb_00002acf	Download File View File

NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS

Saikatendu, K.S., Joseph, J.S., Subramanian, V., Neuman, B.W., Buchmeier, M.J., Stevens, R.C., Kuhn, P., Joint Center for Structural Genomics (JCSG)

(2005) Structure 13: 1665-1675

Released	2006-02-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	SARS coronavirus Tor2
Macromolecule	Replicase polyprotein 1ab (protein)
Unique Ligands	GOL

Explore in 3D

2BWK \| pdb_00002bwk	Download File View File

Murine angiogenin, sulphate complex

Holloway, D.E., Chavali, G.B., Hares, M.C., Subramanian, V., Acharya, K.R.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1568

Released	2005-11-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	SO4

Explore in 3D

2BWL \| pdb_00002bwl	Download File View File

Murine angiogenin, phosphate complex

Holloway, D.E., Chavali, G.B., Hares, M.C., Subramanian, V., Acharya, K.R.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1568

Released	2005-11-30
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Mus musculus
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	PO4

Explore in 3D

2EPE \| pdb_00002epe	Download File View File

Crystal structure analysis of Hen egg white lysozyme grown by capillary method

Naresh, M.D., Subramanian, V., Jaimohan, S.M., Rajaram, A., Arumugam, V., Usha, R., Mandal, A.B.

To be published

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

Explore in 3D

2FYG \| pdb_00002fyg	Download File View File

Crystal structure of NSP10 from Sars coronavirus

Joseph, J.S., Saikatendu, K.S., Subramanian, V., Neuman, B.W., Brooun, A., Griffith, M., Moy, K., Yadav, M.K., Velasquez, J., Buchmeier, M.J., Stevens, R.C., Kuhn, P.

(2006) J Virol 80: 7894-7901

Released	2006-08-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Replicase polyprotein 1ab (protein)
Unique Ligands	GOL, ZN

Explore in 3D

2GRI \| pdb_00002gri	Download File View File

NMR Structure of the SARS-CoV non-structural protein nsp3a

Serrano, P., Almeida, M.S., Johnson, M.A., Herrmann, T., Saikatendu, K.S., Joseph, J., Subramanian, V., Neuman, B.W., Buchmeier, M.J., Stevens, R.C., Kuhn, P., Wuthrich, K., Joint Center for Structural Genomics (JCSG)

(2007) J Virol 81: 12049-12060

Released	2006-12-19
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	NSP3 (protein)

Explore in 3D

2IDY \| pdb_00002idy	Download File View File

NMR Structure of the SARS-CoV non-structural protein nsp3a

Serrano, P., Almeida, M.S., Johnson, M.A., Horst, R., Herrmann, T., Joseph, J., Saikatendu, K., Subramanian, V., Stevens, R.C., Kuhn, P., Wuthrich, K., Joint Center for Structural Genomics (JCSG)

(2007) J Virol 81: 12049-12060

Released	2006-12-05
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	NSP3 (protein)

Explore in 3D

2J4T \| pdb_00002j4t	Download File View File

Biological and Structural Features of Murine Angiogenin-4, an Angiogenic Protein

Crabtree, B., Holloway, D.E., Baker, M.D., Acharya, K.R., Subramanian, V.

(2007) Biochemistry 46: 2431

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Mus musculus
Macromolecule	ANGIOGENIN-4 (protein)

Explore in 3D

2K88 \| pdb_00002k88	Download File View File

Association of subunit d (Vma6p) and E (Vma4p) with G (Vma10p) and the NMR solution structure of subunit G (G1-59) of the Saccharomyces cerevisiae V1VO ATPase

Sankaranarayanan, N., Gayen, S., Thaker, Y., Subramanian, V., Manimekalai, M.S.S., Gruber, G.

(2009) Biochim Biophys Acta 1787: 242-251

Released	2009-08-11
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Vacuolar proton pump subunit G (protein)

Explore in 3D

2KJ7 \| pdb_00002kj7	Download File View File

Three-Dimensional NMR Structure of Rat Islet Amyloid Polypeptide in DPC micelles

Nanga, R., Brender, J.R., Xu, J., Hartman, K., Subramanian, V., Ramamoorthy, A.

(2009) J Am Chem Soc 131: 8252-8261

Released	2009-06-23
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	Islet amyloid polypeptide (protein)

Explore in 3D

2M33 \| pdb_00002m33	Download File View File

Solution NMR structure of full-length oxidized microsomal rabbit cytochrome b5

Subramanian, V., Ahuja, S., Popovych, N., Huang, R., Le Clair, S.V., Jahr, N., Soong, R., Xu, J., Yamamoto, K., Nanga, R.P., Im, S., Waskell, L., Ramamoorthy, A.

To be published

Released	2013-02-06
Method	SOLUTION NMR
Organisms	Oryctolagus cuniculus
Macromolecule	Cytochrome b5 (protein)
Unique Ligands	HEM

Explore in 3D

2OFZ \| pdb_00002ofz	Download File View File

Ultrahigh Resolution Crystal Structure of RNA Binding Domain of SARS Nucleopcapsid (N Protein) at 1.1 Angstrom Resolution in Monoclinic Form.

Saikatendu, K., Joseph, J., Subramanian, V., Neuman, B., Buchmeier, M., Stevens, R.C., Kuhn, P.

(2007) J Virol 81: 3913-3921

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	SARS coronavirus Tor2
Macromolecule	Nucleocapsid protein (protein)
Unique Ligands	EDO

Explore in 3D

2OG3 \| pdb_00002og3	Download File View File

structure of the rna binding domain of n protein from SARS coronavirus in cubic crystal form

Saikatendu, K., Joseph, J., Subramanian, V., Neuman, B., Buchmeier, M., Stevens, R.C., Kuhn, P.

(2007) J Virol 81: 3913-3921

Released	2007-04-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	SARS coronavirus Tor2
Macromolecule	Nucleocapsid protein (protein)

Explore in 3D

2OV6 \| pdb_00002ov6	Download File View File

The NMR structure of subunit F of the Methanogenic A1Ao ATP synthase and its interaction with the nucleotide-binding subunit B

Gayen, S., Subramanian, V., Biukovic, G.

(2007) Biochemistry 46: 11684-11694

Released	2007-12-25
Method	SOLUTION NMR
Organisms	Methanosarcina mazei Go1
Macromolecule	V-type ATP synthase subunit F (protein)

Explore in 3D

2OZK \| pdb_00002ozk	Download File View File

Structure of an N-Terminal Truncated Form of Nendou (NSP15) From SARS-CORONAVIRUS

Saikatendu, K., Joseph, J., Subramanian, V., Neuman, B., Buchmeier, M., Stevens, R.C., Kuhn, P.

(2007) J Virol 81: 6700-6708

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Uridylate-specific endoribonuclease (protein)

Explore in 3D

2VQ8 \| pdb_00002vq8	Download File View File

RNASE ZF-1A

Kazakou, K., Holloway, D.E., Prior, S.H., Subramanian, V., Acharya, K.R.

(2008) J Mol Biology 380: 206

Released	2008-06-17
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Danio rerio
Macromolecule	RNASE ZF-1A (protein)
Unique Ligands	CL

Explore in 3D

2VQ9 \| pdb_00002vq9	Download File View File

RNASE ZF-3E

Kazakou, K., Holloway, D.E., Prior, S.H., Subramanian, V., Acharya, K.R.

(2008) J Mol Biology 380: 206

Released	2008-06-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Danio rerio
Macromolecule	RNASE 1 (protein)
Unique Ligands	CL

Explore in 3D

3B1T \| pdb_00003b1t	Download File View File

Crystal structure of human peptidylarginine deiminase 4 in complex with o-Cl-amidine

Causey, C.P., Jones, J.E., Slack, J.L., Kamei, D., Jones Jr, L.E., Subramanian, V., Knuckley, B., Ebrahimi, P., Chumanevich, A.A., Luo, Y., Hashimoto, H., Shimizu, T., Sato, M., Hofseth, L.J., Thompson, P.R.

(2011) J Med Chem 54: 6919-6935

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	CA, SO4, YCL

Explore in 3D

3B1U \| pdb_00003b1u	Download File View File

Crystal structure of human peptidylarginine deiminase 4 in complex with o-F-amidine

(2011) J Med Chem 54: 6919-6935

Released	2011-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	CA, SO4, YFF