RCSB PDB: Search

1TI7 \| pdb_00001ti7	Download File View File

CRYSTAL STRUCTURE OF NMRA, A NEGATIVE TRANSCRIPTIONAL REGULATOR, IN COMPLEX WITH NADP AT 1.7A RESOLUTION

Lamb, H.K., Leslie, K., Dodds, A.L., Nutley, M., Cooper, A., Johnson, C., Thompson, P., Stammers, D.K., Hawkins, A.R.

(2003) J Biological Chem 278: 32107-32114

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus nidulans
Macromolecule	nitrogen metabolite repression regulator NmrA (protein)
Unique Ligands	CL, GOL, K, NAP

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1XGK \| pdb_00001xgk	Download File View File

CRYSTAL STRUCTURE OF N12G AND A18G MUTANT NMRA

Lamb, H.K., Ren, J., Park, A., Johnson, C., Leslie, K., Cocklin, S., Thompson, P., Mee, C., Cooper, A., Stammers, D.K., Hawkins, A.R.

(2004) Protein Sci 13: 3127-3138

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Aspergillus nidulans
Macromolecule	NITROGEN METABOLITE REPRESSION REGULATOR NMRA (protein)
Unique Ligands	CL, GOL, K, PO4

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2LHV \| pdb_00002lhv	Download File View File

Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Macromolecule	MUC2 Mucin Domain Peptide (protein)

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2LHW \| pdb_00002lhw	Download File View File

Tri-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHX \| pdb_00002lhx	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHY \| pdb_00002lhy	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LHZ \| pdb_00002lhz	Download File View File

Di-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI0 \| pdb_00002li0	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI1 \| pdb_00002li1	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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2LI2 \| pdb_00002li2	Download File View File

Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat

Borgert, A., Heimburg-Molinaro, J., Lasanajak, Y., Ju, T., Liu, M., Thompson, P., Ragupathi, G., Barany, G., Cummings, R., Smith, D., Live, D.

(2012) ACS Chem Biol 7: 1031-1039

Released	2012-04-04
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	MUC2 Mucin Domain Peptide (protein)
Unique Ligands	A2G

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3HVM \| pdb_00003hvm	Download File View File

Agmatine Deiminase from Helicobacter pylori

Jones, J., Lovelace, L., Lebioda, L., Thompson, P.

(2010) Bioorg Chem 38: 62-73

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Helicobacter pylori J99
Macromolecule	AGMATINE DEIMINASE (protein)

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3Q8K \| pdb_00003q8k	Download File View File

Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with product 5'-flap DNA, SM3+, and K+

Tsutakawa, S.E., Classen, S., Chapados, B.R., Arvai, A., Finger, D.L., Guenther, G., Tomlinson, C.G., Thompson, P., Sarker, A.H., Shen, B., Cooper, P.K., Grasby, J.A., Tainer, J.A.

(2011) Cell 145: 198-211

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.2001 Å
Organisms	Homo sapiens
Macromolecule	Flap endonuclease 1 (protein) DNA (5'-D(APCPCPGPTPCPC)-3') (nucleic acid) DNA (5'-D(APCPTPCPTPGPCPCPTPCPAPAPGPAPCPGPGPT)-3') (nucleic acid) DNA (5'-D(PTPGPAPGPGPCPAPGPAPGPT)-3') (nucleic acid)
Unique Ligands	K, OH, SM

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3Q8L \| pdb_00003q8l	Download File View File

Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with substrate 5'-flap DNA, SM3+, and K+

Tsutakawa, S.E., Classen, S., Chapados, B.R., Arvai, A., Finger, D.L., Guenther, G., Tomlinson, C.G., Thompson, P., Sarker, A.H., Shen, B., Cooper, P.K., Grasby, J.A., Tainer, J.A.

(2011) Cell 145: 198-211

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.319 Å
Organisms	Homo sapiens
Macromolecule	Flap endonuclease 1 (protein) DNA (5'-D(APCPCPGPTPCPC)-3') (nucleic acid) DNA (5'-D(APCPTPCPTPGPCPCPTPCPAPAPGPAPCPGPGPT)-3') (nucleic acid) DNA (5'-D(TPTPGPAPGPGPCPAPGPAPGP*T)-3') (nucleic acid)
Unique Ligands	K, SM, SO4

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3Q8M \| pdb_00003q8m	Download File View File

Crystal Structure of Human Flap Endonuclease FEN1 (D181A) in complex with substrate 5'-flap DNA and K+

Tsutakawa, S.E., Classen, S., Chapados, B.R., Arvai, A., Finger, D.L., Guenther, G., Tomlinson, C.G., Thompson, P., Sarker, A.H., Shen, B., Cooper, P.K., Grasby, J.A., Tainer, J.A.

(2011) Cell 145: 198-211

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Flap endonuclease 1 (protein) DNA (5'-D(APCPCPGPTPCPC)-3') (nucleic acid) DNA (5'-D(APCPTPCPTPGPCPCPTPCPAPAPGPAPCPGPGPT)-3') (nucleic acid) DNA (5'-D(TPTPGPAPGPGPCPAPGPAPGP*T)-3') (nucleic acid)
Unique Ligands	K

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3ZET \| pdb_00003zet	Download File View File

Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer.

Nichols, C.E., Lamb, H.K., Thompson, P., El Omari, K., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2013) Protein Sci 22: 628

Released	2013-03-20
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
Macromolecule	PROBABLE TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN GCP (protein) PUTATIVE M22 PEPTIDASE YEAZ (protein)
Unique Ligands	AMP, CD, TAM

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3ZEU \| pdb_00003zeu	Download File View File

Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer bound to ATPgammaS

Nichols, C.E., Lamb, H.K., Thompson, P., El Omari, K., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2013) Protein Sci 22: 628

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
Macromolecule	PROBABLE TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN GCP (protein) PUTATIVE M22 PEPTIDASE YEAZ (protein)
Unique Ligands	ADP, AGS, CL, MG, ZN

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4UFC \| pdb_00004ufc	Download File View File

Crystal structure of the GH95 enzyme BACOVA_03438

Rogowski, A., Briggs, J.A., Mortimer, J.C., Tryfona, T., Terrapon, N., Lowe, E.C., Basle, A., Morland, C., Day, A.M., Zheng, H., Rogers, T.E., Thompson, P., Hawkins, A.R., Yadav, M.P., Henrissat, B., Martens, E.C., Dupree, P., Gilbert, H.J., Bolam, D.N.

(2015) Nat Commun 6: 7481

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Bacteroides ovatus
Macromolecule	GH95 (protein)
Unique Ligands	CA, CAC, GIV

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4UIO \| pdb_00004uio	Download File View File

Structure of the Salmonella typhi Type I Dehydroquinase covalently inhibited by a 3-dehydroquinic acid derivative

Otero, J.M., Llamas-Saiz, A.L., Tizon, L., Lence, E., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2015) J Am Chem Soc 137: 9333-9343

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-DEHYDROQUINATE DEHYDRATASE (protein)
Unique Ligands	CL, NA, VAU

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5N0M \| pdb_00005n0m	Download File View File

hPAD4 crystal complex with BB-F-amidine

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8HT, CA, SO4

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5N0Y \| pdb_00005n0y	Download File View File

hPAD4 crystal complex with AFM-30a

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8FQ, CA, SO4

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5N0Z \| pdb_00005n0z	Download File View File

hPAD4 crystal complex with AFM-41a

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8FT, CA, SO4

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5N1B \| pdb_00005n1b	Download File View File

hPAD4 crystal complex with AFM-14a

Beaumont, E., Kerry, P., Thompson, P., Muth, A., Subramanian, V., Nagar, M., Srinath, H., Clancy, K., Parelkar, S.

(2017) J Med Chem 60: 3198-3211

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Protein-arginine deiminase type-4 (protein)
Unique Ligands	8FW, CA, SO4

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6H5C \| pdb_00006h5c	Download File View File

Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 1

Sanz-Gaitero, M., Maneiro, M., Lence, E., Otero, J.M., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2019) Org Chem Front 9: 3127-3135

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	FSQ

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6H5D \| pdb_00006h5d	Download File View File

Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 2

Sanz-Gaitero, M., Maneiro, M., Lence, E., Otero, J.M., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2019) Org Chem Front 9: 3127-3135

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	WPL

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6H5G \| pdb_00006h5g	Download File View File

Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 3

Sanz-Gaitero, M., Maneiro, M., Lence, E., Otero, J.M., Thompson, P., Hawkins, A.R., Gonzalez-Bello, C., van Raaij, M.J.

(2019) Org Chem Front 6: 3127-3135

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.04 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	FQZ

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1TI7 | pdb_00001ti7

1XGK | pdb_00001xgk

2LHV | pdb_00002lhv

2LHW | pdb_00002lhw

2LHX | pdb_00002lhx

2LHY | pdb_00002lhy

2LHZ | pdb_00002lhz

2LI0 | pdb_00002li0

2LI1 | pdb_00002li1

2LI2 | pdb_00002li2

3HVM | pdb_00003hvm

3Q8K | pdb_00003q8k

3Q8L | pdb_00003q8l

3Q8M | pdb_00003q8m

3ZET | pdb_00003zet

3ZEU | pdb_00003zeu

4UFC | pdb_00004ufc

4UIO | pdb_00004uio

5N0M | pdb_00005n0m

5N0Y | pdb_00005n0y

5N0Z | pdb_00005n0z

5N1B | pdb_00005n1b

6H5C | pdb_00006h5c

6H5D | pdb_00006h5d

6H5G | pdb_00006h5g