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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Wu, Y."

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Search Summary

This query matches 397 Structures.

Refinements

Structure Determination Methodology

experimental (397)

Scientific Name of Source Organism

	Homo sapiens (111)
	synthetic construct (48)
	Influenza A virus (24)
	Mus musculus (15)
	Severe acute respiratory syndrome coronavirus 2 (11)
	Methanococcus voltae (10)
	Arabidopsis thaliana (9)
	Escherichia coli (9)
	Influenza A virus (A/RI/5+/1957(H2N2)) (9)
	Simian immunodeficiency virus (9)

More...

Taxonomy

	Eukaryota (182)
	Riboviria (115)
	Bacteria (90)
	other sequences (48)
	Archaea (20)
	Varidnaviria (6)
	Duplodnaviria (4)
	unclassified sequences (4)
	unclassified bacterial viruses (2)

Experimental Method

	X-RAY DIFFRACTION (303)
	SOLUTION NMR (64)
	ELECTRON MICROSCOPY (29)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (390)
	DNA (25)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (25)
	1.5 - 2.0 (80)
	2.0 - 2.5 (88)
	2.5 - 3.0 (83)
	3.0 - 3.5 (37)
	3.5 - 4.0 (12)
	4.0 - 4.5 (3)
	> 4.5 (4)

Release Date

	2000 - 2004 (15)
	2005 - 2009 (45)
	2010 - 2014 (115)
	2015 - 2019 (129)
	2020 - 2024 (90)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (89)
	Transferases (43)
	Isomerases (9)
	Oxidoreductases (6)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (21)
	mpstruc (20)
	MemProtMD (17)
	OPM (14)

Symmetry Type

	Asymmetric (253)
	Cyclic (124)
	Dihedral (22)
	Octahedral (2)

SCOP Classification

	All beta proteins (76)
	Artifacts (30)
	Alpha and beta proteins (a/b) (28)
	Alpha and beta proteins (a+b) (28)
	All alpha proteins (25)
	Coiled coil proteins (13)
	Multi-domain proteins (alpha and beta) (5)
	Small proteins (3)

AllSelected

1 to 25 of 397 Structures

Page 1 of 16

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1CS7 \| pdb_00001cs7	Download File View File

SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER

Lewis, F.D., Liu, X., Wu, Y., Miller, S.E., Wasielewski, M.R., Letsinger, R.L., Sanishvili, R., Joachimiak, A., Tereshko, V., Egli, M.

(1999) J Am Chem Soc 121: 9905-9906

Released	2001-10-19
Method	X-RAY DIFFRACTION 3.2 Å
Macromolecule	5'-D(GP(BRU)PTPTPTPGP(S02)CPAPAPAPAPC)-3' (nucleic acid)
Unique Ligands	SR

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1FI7 \| pdb_00001fi7	Download File View File

Solution structure of the imidazole complex of cytochrome C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1FI9 \| pdb_00001fi9	Download File View File

SOLUTION STRUCTURE OF THE IMIDAZOLE COMPLEX OF CYTOCHROME C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1L4U \| pdb_00001l4u	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION

Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S., Ji, X.

(2002) J Mol Biology 319: 779-789

Released	2002-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	ADP, CL, EPE, MG, PT

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1L4Y \| pdb_00001l4y	Download File View File

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION

Gu, Y., Reshetnikova, L., Li, Y., Wu, Y., Yan, H., Singh, S., Ji, X.

(2002) J Mol Biology 319: 779-789

Released	2002-06-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	ADP, CL, MG

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1OP1 \| pdb_00001op1	Download File View File

Solution NMR structure of domain 1 of receptor associated protein

Wu, Y., Migliorini, M., Yu, P., Strickland, D.K., Wang, Y.-X.

(2003) J Biomol NMR 26: 187-188

Released	2003-08-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein precursor (protein)

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1OV2 \| pdb_00001ov2	Download File View File

Ensemble of the solution structures of domain one of receptor associated protein

Wu, Y., Migliorini, M., Yu, P., Strickland, D.K., Wang, Y.X.

(2003) J Biomol NMR 26: 187-188

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Alpha-2-macroglobulin receptor-associated protein precursor (protein)

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1PG9 \| pdb_00001pg9	Download File View File

NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex

Wu, Y., Pradhan, P., Havener, J., Chaney, S.G., Campbel, S.L.

(2004) J Mol Biology 341: 1251-1269

Released	2004-07-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPCPAPGPGPCPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPGPCPCPTPGPAPGPG)-3' (nucleic acid)
Unique Ligands	1PT

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1PGC \| pdb_00001pgc	Download File View File

NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex

Wu, Y., Pradhan, P., Havener, J., Chaney, S.G., Campbel, S.L.

(2004) J Mol Biology 341: 1251-1269

Released	2004-07-06
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPTPCPAPGPGPCPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPGPCPCPTPGPAPGPG)-3' (nucleic acid)
Unique Ligands	1PT

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1RII \| pdb_00001rii	Download File View File

Crystal structure of phosphoglycerate mutase from M. Tuberculosis

Mueller, P., Sawaya, M.R., Chan, S., Wu, Y., Pashkova, I., Perry, J., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2005) Acta Crystallogr D Biol Crystallogr 61: 309-315

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (protein)
Unique Ligands	GOL

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1T4G \| pdb_00001t4g	Download File View File

ATPase in complex with AMP-PNP

Wu, Y., He, Y., Moya, I.A., Qian, X., Luo, Y.

(2004) Mol Cell 15: 423-435

Released	2004-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG

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1TMM \| pdb_00001tmm	Download File View File

Crystal structure of ternary complex of E.coli HPPK(W89A) with MGAMPCPP and 6-Hydroxymethylpterin

Blaszczyk, J., Li, Y., Wu, Y., Shi, G., Ji, X., Yan, H.

(2005) Biochemistry 44: 8590-8599

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli
Macromolecule	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (protein)
Unique Ligands	ACT, APC, CL, GOL, HHR, MG

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1TQE \| pdb_00001tqe	Download File View File

Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2

Chen, L., Han, A., He, J., Wu, Y., Liu, J.O.

(2005) J Mol Biology 345: 91-102

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Histone deacetylase 9 (protein) Myocyte-specific enhancer factor 2B (protein) MEF2 binding site of nur77 promoter (nucleic acid)

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1XAO \| pdb_00001xao	Download File View File

Hsp40-Ydj1 dimerization domain

Wu, Y., Sha, B.

(2005) J Mol Biology 346: 1005-1011

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Mitochondrial protein import protein MAS5 (protein)

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1XU4 \| pdb_00001xu4	Download File View File

ATPASE IN COMPLEX WITH AMP-PNP, MAGNESIUM AND POTASSIUM CO-F

Wu, Y., Qian, X., He, Y., Moya, I.A., Luo, Y.

(2005) J Biological Chem 280: 722-728

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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1XU7 \| pdb_00001xu7	Download File View File

Crystal Structure of the Interface Open Conformation of Tetrameric 11b-HSD1

Hosfield, D.J., Wu, Y., Skene, R.J., Hilger, M., Jennings, A., Snell, G.P., Aertgeerts, K.

(2005) J Biological Chem 280: 4639-4648

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase, isozyme 1 (protein)
Unique Ligands	CPS, NDP

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1XU9 \| pdb_00001xu9	Download File View File

Crystal Structure of the Interface Closed Conformation of 11b-hydroxysteroid dehydrogenase isozyme 1

Hosfield, D.J., Wu, Y., Skene, R.J., Hilger, M., Jennings, A., Snell, G.P., Aertgeerts, K.

(2005) J Biological Chem 280: 4639-4648

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase, isozyme 1 (protein)
Unique Ligands	CPS, MES, NDP

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2A07 \| pdb_00002a07	Download File View File

Crystal Structure of Foxp2 bound Specifically to DNA.

Stroud, J.C., Wu, Y., Bates, D.L., Han, A., Nowick, K., Paabo, S., Tong, H., Chen, L.

(2006) Structure 14: 159-166

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Forkhead box protein P2 (protein) 5'-D(APAPCPTPAPTPGPAPAPAPCPAPAPAPTPTPTPTPCPCPT)-3' (nucleic acid) 5'-D(TPTPAPGPGPAPAPAPAPTPTPTPGPTPTPTPCPAPTPAPG)-3' (nucleic acid)
Unique Ligands	MG

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2AS5 \| pdb_00002as5	Download File View File

Structure of the DNA binding domains of NFAT and FOXP2 bound specifically to DNA.

Wu, Y., Stroud, J.C., Borde, M., Bates, D.L., Guo, L., Han, A., Rao, A., Chen, L.

(2006) Cell 126: 375-387

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Forkhead box protein P2 (protein) Nuclear factor of activated T-cells, cytoplasmic 2 (protein) 5'-D(APAPCPTPAPTPGPAPAPAPCPAPAPAPTPTPTPTPCPCPTP)-3' (nucleic acid) 5'-D(TPTPAPGPGPAPAPAPAPTPTPTPGPTPTPTPCPAPTPAPGP)-3' (nucleic acid)
Unique Ligands	MG

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2B21 \| pdb_00002b21	Download File View File

RADA Recombinase in complex with AMPPNP at pH 6.0

Qian, X., He, Y., Wu, Y., Luo, Y.

To be published

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2B26 \| pdb_00002b26	Download File View File

The crystal structure of the protein complex of yeast Hsp40 Sis1 and Hsp70 Ssa1

Li, J., Wu, Y., Qian, X., Sha, B.

(2006) Biochem J 398: 353-360

Released	2006-09-19
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Drosophila melanogaster Saccharomyces cerevisiae
Macromolecule	Heat shock 70 kDa protein cognate 2 (protein) SIS1 protein (protein)

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2F1H \| pdb_00002f1h	Download File View File

RECOMBINASE IN COMPLEX WITH AMP-PNP and Potassium

Qian, X., He, Y., Wu, Y., Luo, Y.

(2006) J Mol Biology 360: 537-547

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, K, MG

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2F1I \| pdb_00002f1i	Download File View File

Recombinase in Complex with AMP-PNP

Qian, X., He, Y., Wu, Y., Luo, Y.

(2006) J Mol Biology 360: 537-547

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ANP, MG

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2F1J \| pdb_00002f1j	Download File View File

Recombinase in Complex with ADP

Qian, X., He, Y., Wu, Y., Luo, Y.

(2006) J Mol Biology 360: 537-547

Released	2006-05-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ADP, MG

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2FPK \| pdb_00002fpk	Download File View File

RadA recombinase in complex with ADP

Wu, Y., Qian, X., He, Y., Moya, I.A., Luo, Y.

(2005) Biochemistry 44: 13753-13761

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanococcus voltae
Macromolecule	DNA repair and recombination protein radA (protein)
Unique Ligands	ADP, K, MG

1 to 25 of 397 Structures

Page 1 of 16

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CS7 | pdb_00001cs7

1FI7 | pdb_00001fi7

1FI9 | pdb_00001fi9

1L4U | pdb_00001l4u

1L4Y | pdb_00001l4y

1OP1 | pdb_00001op1

1OV2 | pdb_00001ov2

1PG9 | pdb_00001pg9

1PGC | pdb_00001pgc

1RII | pdb_00001rii

1T4G | pdb_00001t4g

1TMM | pdb_00001tmm

1TQE | pdb_00001tqe

1XAO | pdb_00001xao

1XU4 | pdb_00001xu4

1XU7 | pdb_00001xu7

1XU9 | pdb_00001xu9

2A07 | pdb_00002a07

2AS5 | pdb_00002as5

2B21 | pdb_00002b21

2B26 | pdb_00002b26

2F1H | pdb_00002f1h

2F1I | pdb_00002f1i

2F1J | pdb_00002f1j

2FPK | pdb_00002fpk