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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Xiao, T."

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Search Summary

This query matches 67 Structures.

Refinements

Structure Determination Methodology

experimental (67)

Scientific Name of Source Organism

	Homo sapiens (39)
	Mus musculus (9)
	Cryptosporidium parvum Iowa II (4)
	synthetic construct (4)
	Escherichia coli K-12 (3)
	Human immunodeficiency virus 1 (3)
	Toxoplasma gondii (3)
	Drosophila melanogaster (2)
	Helianthus annuus (2)
	Plasmodium falciparum 3D7 (2)

More...

Taxonomy

	Eukaryota (62)
	Bacteria (6)
	other sequences (4)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (52)
	SOLUTION NMR (10)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (67)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (17)
	2.5 - 3.0 (17)
	3.0 - 3.5 (8)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (23)
	2010 - 2014 (20)
	2015 - 2019 (8)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (4)
	Isomerases (3)
	Lyases (2)

Membrane Protein Annotation

	OPM (8)
	PDBTM (5)
	mpstruc (4)
	MemProtMD (1)

Symmetry Type

	Asymmetric (51)
	Cyclic (19)
	Dihedral (1)

SCOP Classification

	All beta proteins (19)
	Artifacts (7)
	Alpha and beta proteins (a/b) (6)
	All alpha proteins (3)
	Small proteins (3)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 67 Structures

Page 1 of 3

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1D2Z \| pdb_00001d2z	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A COMPLEX BETWEEN THE DEATH DOMAINS OF PELLE AND TUBE

Xiao, T., Towb, P., Wasserman, S.A., Sprang, S.R.

(1999) Cell 99: 545-555

Released	1999-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	DEATH DOMAIN OF PELLE (protein) DEATH DOMAIN OF TUBE (protein)
Unique Ligands	EPE

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1EDY \| pdb_00001edy	Download File View File

CRYSTAL STRUCTURE OF RAT ALPHA 1-MACROGLOBULIN RECEPTOR BINDING DOMAIN

Xiao, T., DeCamp, D.L., Sprang, S.R.

(2000) Protein Sci 9: 1889-1897

Released	2000-12-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	ALPHA 1-MACROGLOBULIN (protein)

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1IK7 \| pdb_00001ik7	Download File View File

Crystal Structure of the Uncomplexed Pelle Death Domain

Xiao, T., Gardner, K.H., Sprang, S.R.

(2002) Proc Natl Acad Sci U S A 99: 11151-11156

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Drosophila melanogaster
Macromolecule	PROBABLE SERINE/THREONINE-PROTEIN KINASE Pelle (protein)
Unique Ligands	MPD, TRS

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1MJN \| pdb_00001mjn	Download File View File

Crystal Structure of the intermediate affinity aL I domain mutant

Shimaoka, M., Xiao, T., Liu, J.H., Yang, Y.T., Dong, Y.C., Jun, C.D., McCormack, A., Zhang, R.G., Wang, J.H., Springer, T.A.

(2003) Cell 112: 99-111

Released	2003-01-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-L (protein)
Unique Ligands	MG

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1MQ8 \| pdb_00001mq8	Download File View File

Crystal structure of alphaL I domain in complex with ICAM-1

Shimaoka, M., Xiao, T., Liu, J.-H., Yang, Y., Dong, Y., Jun, C.-D., McCormack, A., Zhang, R., Joachimiak, A., Takagi, J., Wang, J.-H., Springer, T.A.

(2003) Cell 112: 99-111

Released	2003-01-14
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-L (protein) intercellular adhesion molecule-1 (protein)
Unique Ligands	MG, NAG
Unique branched monosaccharides	NAG

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1MQ9 \| pdb_00001mq9	Download File View File

Crystal structure of high affinity alphaL I domain with ligand mimetic crystal contact

Shimaoka, M., Xiao, T., Liu, J.-H., Yang, Y., Dong, Y., Jun, C.-D., McCormack, A., Zhang, R., Joachimiak, A., Takagi, J., Wang, J.-H., Springer, T.A.

(2003) Cell 112: 99-111

Released	2003-01-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-L (protein)
Unique Ligands	MN

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1MQA \| pdb_00001mqa	Download File View File

Crystal structure of high affinity alphaL I domain in the absence of ligand or metal

Shimaoka, T., Xiao, T., Liu, J.-H., Yang, Y., Dong, Y., Jun, C.-D., Zhang, R., Takagi, J., Wang, J.-H., Springer, T.A.

(2003) Cell 112: 99-111

Released	2003-01-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-L (protein)

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1TYE \| pdb_00001tye	Download File View File

Structural basis for allostery in integrins and binding of ligand-mimetic therapeutics to the platelet receptor for fibrinogen

Xiao, T., Takagi, J., Coller, B.S., Wang, J.-H., Springer, T.A.

(2004) Nature 432: 59-67

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-IIb (protein) Integrin beta-3 (protein)
Unique Ligands	CA, CAC, MG, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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2FTP \| pdb_00002ftp	Download File View File

Crystal Structure of hydroxymethylglutaryl-CoA lyase from Pseudomonas aeruginosa

Xiao, T., Evdokimova, E., Liu, Y., Kudritska, M., Savchenko, A., Pai, E.F., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-03-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hydroxymethylglutaryl-CoA lyase (protein)
Unique Ligands	GOL, NA

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2PLU \| pdb_00002plu	Download File View File

Crystal structure of Cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans isomerase cgd2_4120

Wernimont, A.K., Lew, J., Hills, T., Kozieradzki, I., Lin, Y.H., Hassanali, A., Zhao, Y., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Artz, J.D., Xiao, T., Structural Genomics Consortium (SGC)

To be published

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Cryptosporidium parvum Iowa II
Macromolecule	20k cyclophilin, putative (protein)

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2POY \| pdb_00002poy	Download File View File

Cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans isomerase cgd2_4120 in complex with cyclosporin A

To be published

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cryptosporidium parvum Iowa II Tolypocladium inflatum
Macromolecule	CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (protein)

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2QG7 \| pdb_00002qg7	Download File View File

Plasmodium vivax ethanolamine kinase Pv091845

Lunin, V.V., Wernimont, A.K., Mulichak, A., Lew, J., Wasney, G., Senisterra, G., Kozieradzki, I., Vedadi, M., Bochkarev, A., Arrowsmith, C.H., Sundstrom, M., Weigelt, J., Edwards, A.E., Hui, R., Hills, T., Artz, J., Xiao, T., Structural Genomics Consortium (SGC)

To be published

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.407 Å
Organisms	Plasmodium vivax
Macromolecule	ethanolamine kinase Pv091845 (protein)
Unique Ligands	SO4

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2R77 \| pdb_00002r77	Download File View File

Crystal structure of phosphatidylethanolamine-binding protein, pfl0955c, from Plasmodium falciparum

Wernimont, A.K., Lew, J., Kozieradzki, I., Lin, Y.H., Sun, X., Khuu, C., Crombette, L., Zhao, Y., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Artz, J.D., Xiao, T., Structural Genomics Consortium (SGC)

To be published

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Phosphatidylethanolamine-binding protein, putative (protein)

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2VC2 \| pdb_00002vc2	Download File View File

Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist L-739758

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	180, CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDK \| pdb_00002vdk	Download File View File

Re-refinement of Integrin AlphaIIbBeta3 Headpiece

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, CAC, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDL \| pdb_00002vdl	Download File View File

Re-refinement of Integrin AlphaIIbBeta3 Headpiece

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, CAC, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDM \| pdb_00002vdm	Download File View File

Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist Tirofiban

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	AGG, CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDN \| pdb_00002vdn	Download File View File

Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist Eptifibatide

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	EPTIFIBATIDE (protein) INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDO \| pdb_00002vdo	Download File View File

Integrin AlphaIIbBeta3 Headpiece Bound to Fibrinogen Gamma chain peptide, HHLGGAKQAGDV

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	FIBRINOGEN, GAMMA POLYPEPTIDE (protein) INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDP \| pdb_00002vdp	Download File View File

Integrin AlphaIIbBeta3 Headpiece Bound to Fibrinogen Gamma chain peptide,LGGAKQAGDV

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	FIBRINOGEN (protein) INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDQ \| pdb_00002vdq	Download File View File

Integrin AlphaIIbBeta3 Headpiece Bound to a Chimeric Fibrinogen Gamma chain peptide, HHLGGAKQRGDV

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	FIBRINOGEN, GAMMA POLYPEPTIDE (protein) INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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2VDR \| pdb_00002vdr	Download File View File

Integrin AlphaIIbBeta3 Headpiece Bound to a chimeric Fibrinogen Gamma chain peptide, LGGAKQRGDV

Springer, T.A., Zhu, J., Xiao, T.

(2008) J Cell Biol 182: 791

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	FIBRINOGEN (protein) INTEGRIN ALPHA-IIB (protein) INTEGRIN BETA-3 (protein) MONOCLONAL ANTIBODY 10E5 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 10E5 LIGHT CHAIN (protein)
Unique Ligands	CA, GOL, MG, NAG
Unique branched monosaccharides	MAN, NAG

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3B6N \| pdb_00003b6n	Download File View File

Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax

Wernimont, A.K., Lew, J., Kozieradzki, I., Lin, Y.H., Sun, X., Khuu, C., Zhao, Y., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bochkarev, A., Hui, R., Artz, J.D., Xiao, T., Structural Genomics Consortium (SGC)

To be published

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Plasmodium vivax Sal-1
Macromolecule	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	ZN

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3BO7 \| pdb_00003bo7	Download File View File

Crystal structure of Toxoplasma gondii peptidyl-prolyl cis-trans isomerase, 541.m00136

To be published

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Tolypocladium inflatum Toxoplasma gondii
Macromolecule	CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE (protein)
Unique Ligands	EDO, SO4

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3C5I \| pdb_00003c5i	Download File View File

Crystal structure of Plasmodium knowlesi choline kinase, PKH_134520

Wernimont, A.K., Hills, T., Lew, J., Wasney, G., Senesterra, G., Kozieradzki, I., Cossar, D., Vedadi, M., Schapira, M., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Weigelt, J., Edwards, A.M., Hui, R., Artz, J.D., Xiao, T., Structural Genomics Consortium (SGC)

To be published

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Plasmodium knowlesi
Macromolecule	Choline kinase (protein) Cleaved fragment of N-terminal expression tag (protein)
Unique Ligands	CA, CHT, GOL, MG, UNL

1 to 25 of 67 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D2Z | pdb_00001d2z

1EDY | pdb_00001edy

1IK7 | pdb_00001ik7

1MJN | pdb_00001mjn

1MQ8 | pdb_00001mq8

1MQ9 | pdb_00001mq9

1MQA | pdb_00001mqa

1TYE | pdb_00001tye

2FTP | pdb_00002ftp

2PLU | pdb_00002plu

2POY | pdb_00002poy

2QG7 | pdb_00002qg7

2R77 | pdb_00002r77

2VC2 | pdb_00002vc2

2VDK | pdb_00002vdk

2VDL | pdb_00002vdl

2VDM | pdb_00002vdm

2VDN | pdb_00002vdn

2VDO | pdb_00002vdo

2VDP | pdb_00002vdp

2VDQ | pdb_00002vdq

2VDR | pdb_00002vdr

3B6N | pdb_00003b6n

3BO7 | pdb_00003bo7

3C5I | pdb_00003c5i