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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Xie, X."

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Search Summary

This query matches 89 Structures.

Refinements

Structure Determination Methodology

experimental (89)

Scientific Name of Source Organism

	Homo sapiens (61)
	synthetic construct (11)
	Rattus norvegicus (10)
	Bos taurus (7)
	Sulfolobus acidocaldarius DSM 639 (7)
	Aspergillus terreus (3)
	Monkeypox virus (3)
	Escherichia coli (2)
	Escherichia coli O157:H7 (2)
	Xanthomonas hortorum ATCC 19865 (2)

More...

Taxonomy

	Eukaryota (69)
	Bacteria (11)
	other sequences (11)
	Archaea (7)
	Varidnaviria (3)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (64)
	ELECTRON MICROSCOPY (17)
	SOLUTION NMR (8)

Polymer Entity Type

	Protein (88)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (3)
	1.5 - 2.0 (8)
	2.0 - 2.5 (35)
	2.5 - 3.0 (21)
	3.0 - 3.5 (11)
	3.5 - 4.0 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (2)
	2005 - 2009 (10)
	2010 - 2014 (33)
	2015 - 2019 (20)
	2020 - 2024 (16)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (34)
	Hydrolases (19)
	Oxidoreductases (13)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (9)
	OPM (8)
	mpstruc (8)
	MemProtMD (2)

Symmetry Type

	Asymmetric (71)
	Cyclic (16)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (29)
	Alpha and beta proteins (a/b) (9)
	Artifacts (3)
	All alpha proteins (3)
	Peptides (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 89 Structures

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1JNK \| pdb_00001jnk	Download File View File

THE C-JUN N-TERMINAL KINASE (JNK3S) COMPLEXED WITH MGAMP-PNP

Xie, X., Su, M.S.-S.

(1998) Structure 6: 983-991

Released	1999-06-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	C-JUN N-TERMINAL KINASE (protein)
Unique Ligands	ANP, MG

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1JUO \| pdb_00001juo	Download File View File

Crystal Structure of Calcium-free Human Sorcin: A Member of the Penta-EF-Hand Protein Family

Xie, X.

(2001) Protein Sci 10: 2419-2425

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	sorcin (protein)

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1PME \| pdb_00001pme	Download File View File

STRUCTURE OF PENTA MUTANT HUMAN ERK2 MAP KINASE COMPLEXED WITH A SPECIFIC INHIBITOR OF HUMAN P38 MAP KINASE

Xie, X.

(1998) Protein Sci 7: 2249-2255

Released	1999-06-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ERK2 (protein)
Unique Ligands	SB2, SO4

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1SCM \| pdb_00001scm	Download File View File

STRUCTURE OF THE REGULATORY DOMAIN OF SCALLOP MYOSIN AT 2.8 ANGSTROMS RESOLUTION

Cohen, C., Xie, X.

(1994) Nature 368: 306-312

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Argopecten irradians
Macromolecule	MYOSIN ESSENTIAL LIGHT CHAIN (protein) MYOSIN HEAVY CHAIN (protein) MYOSIN REGULATORY LIGHT CHAIN (protein)
Unique Ligands	CA

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1TAF \| pdb_00001taf	Download File View File

DROSOPHILA TBP ASSOCIATED FACTORS DTAFII42/DTAFII62 HETEROTETRAMER

Xie, X., Kokubo, T., Cohen, S.L., Mirza, U.A., Hoffmann, A., Chait, B.T., Roeder, R.G., Nakatani, Y., Burley, S.K.

(1996) Nature 380: 316-322

Released	1996-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	TFIID TBP ASSOCIATED FACTOR 42 (protein) TFIID TBP ASSOCIATED FACTOR 62 (protein)
Unique Ligands	ZN

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1TKQ \| pdb_00001tkq	Download File View File

SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE IN THE PRESENCE OF CsCl

Xie, X., Al-Momani, L., Bockelmann, D., Griesinger, C., Koert, U.

(2005) FEBS J 272: 975

Released	2004-07-13
Method	SOLUTION NMR
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein) MINI-GRAMICIDIN A (protein)
Unique Ligands	SIN

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1VZT \| pdb_00001vzt	Download File View File

ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING AND CATALYSIS

Zhang, Y., Swaminathan, G.J., Deshpande, A., Natesh, R., Xie, X., Acharya, K.R., Brew, K.

(2003) Biochemistry 42: 13512

Released	2005-05-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE (protein)
Unique Ligands	MN, TRS, UDP

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2LX6 \| pdb_00002lx6	Download File View File

Structure of Lasso Peptide Caulosegnin I

Hegemann, J.D., Zimmermann, M., Xie, X., Marahiel, M.A.

(2013) J Am Chem Soc 135: 210-222

Released	2012-12-26
Method	SOLUTION NMR
Organisms	Caulobacter segnis ATCC 21756
Macromolecule	Putative uncharacterized protein (protein)

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2M37 \| pdb_00002m37	Download File View File

Structure of lasso peptide astexin-1

Zimmermann, M., Hegemann, J.D., Xie, X., Marahiel, M.A.

(2013) Chem Biol 20: 558-569

Released	2013-05-01
Method	SOLUTION NMR
Organisms	Asticcacaulis excentricus CB 48
Macromolecule	ASTEXIN-1 (protein)

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2MFV \| pdb_00002mfv	Download File View File

Structure of lasso peptide xanthomonin ii

Hegemann, J.D., Zimmermann, M., Harms, K., Xie, X., Marahiel, M.A.

To be published

Released	2014-10-29
Method	SOLUTION NMR
Organisms	Xanthomonas hortorum ATCC 19865
Macromolecule	Xanthomonin II (protein)

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2MLJ \| pdb_00002mlj	Download File View File

Structure of Lasso Peptide Caulonodin V

Zimmermann, M., Hegemann, J.D., Xie, X., Marahiel, M.A.

(2014) Chem Sci 5: 4032-4043

Released	2015-01-14
Method	SOLUTION NMR
Organisms	Caulobacter sp. K31
Macromolecule	Caulonodin V (protein)

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2MMT \| pdb_00002mmt	Download File View File

Lasso peptide-based integrin inhibitor: Microcin J25 variant with RGDF substitution of Gly12-Ile13-Gly14-Thr15

Hegemann, J.D., Zimmermann, M., Knappe, T.A., Xie, X., Marahiel, M.A.

(2014) J Med Chem 57: 5829-5834

Released	2014-07-02
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Microcin J25 RGDF mutant (protein)

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2MMW \| pdb_00002mmw	Download File View File

LASSO PEPTIDE BASED INTEGRIN INHIBITOR: MICROCIN J25 VARIANT WITH RGD SUBSTITUTION of GLY12-ILE13-GLY14

Knappe, T.A., Linne, U., Xie, X., Marahiel, M.A.

(2011) Angew Chem Int Ed Engl 50: 8714-8717

Released	2014-05-14
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	Microcin J25 (protein)

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2MXP \| pdb_00002mxp	Download File View File

Solution structure of NDP52 ubiquitin-binding zinc finger

Pan, L., Xie, X.

(2015) Autophagy 11: 1775-1789

Released	2015-11-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calcium-binding and coiled-coil domain-containing protein 2 (protein)
Unique Ligands	ZN

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2NS2 \| pdb_00002ns2	Download File View File

Crystal Structure of Spindlin1

Zhao, Q., Qin, L., Jiang, F., Wu, B., Yue, W., Xu, F., Rong, Z., Yuan, H., Xie, X., Gao, Y., Bai, C., Bartlam, M.

(2007) J Biological Chem 282: 647-656

Released	2006-11-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Spindlin-1 (protein)
Unique Ligands	PO4

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2OJG \| pdb_00002ojg	Download File View File

Crystal structure of ERK2 in complex with N,N-dimethyl-4-(4-phenyl-1H-pyrazol-3-yl)-1H-pyrrole-2-carboxamide

Xie, X., Jacobs, M.D.

(2007) J Med Chem 50: 1280-1287

Released	2007-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	19A, SO4

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2OJI \| pdb_00002oji	Download File View File

Crystal structure of ERK2 in complex with N-benzyl-4-(4-(3-chlorophenyl)-1H-pyrazol-3-yl)-1H-pyrrole-2-carboxamide

Xie, X., Jacobs, M.D.

(2007) J Med Chem 50: 1280-1287

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	33A, SO4

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2OJJ \| pdb_00002ojj	Download File View File

Crystal structure of ERK2 in complex with (S)-N-(1-(3-chloro-4-fluorophenyl)-2-hydroxyethyl)-4-(4-(3-chlorophenyl)-1H-pyrazol-3-yl)-1H-pyrrole-2-carboxamide

Xie, X., Jacobs, M.D.

(2007) J Med Chem 50: 1280-1287

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	82A, SO4

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2OK1 \| pdb_00002ok1	Download File View File

Crystal structure of JNK3 bound to N-benzyl-4-(4-(3-chlorophenyl)-1H-pyrazol-3-yl)-1H-pyrrole-2-carboxamide

Xie, X., Jacobs, M.D.

(2007) J Med Chem 50: 1280-1287

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein)
Unique Ligands	33A

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3B6Z \| pdb_00003b6z	Download File View File

Lovastatin polyketide enoyl reductase (LovC) complexed with 2'-phosphoadenosyl isomer of crotonoyl-CoA

Ames, B.D., Smith, P.T., Ma, S.M., Wong, E.W., Xie, X., Vederas, J.C., Tang, Y., Tsai, S.-C.

(2012) Proc Natl Acad Sci U S A 109: 11144-11149

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Aspergillus terreus
Macromolecule	Enoyl reductase (protein)
Unique Ligands	CO7, GOL

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3B70 \| pdb_00003b70	Download File View File

Crystal structure of Aspergillus terreus trans-acting lovastatin polyketide enoyl reductase (LovC) with bound NADP

Ames, B.D., Smith, P.T., Ma, S.M., Wong, E.W., Xie, X., Vederas, J.C., Tang, Y., Tsai, S.-C.

(2012) Proc Natl Acad Sci U S A 109: 11144-11149

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Aspergillus terreus
Macromolecule	Enoyl reductase (protein)
Unique Ligands	GOL, NAP

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3G90 \| pdb_00003g90	Download File View File

JNK-3 bound to (Z)-5-fluoro-1-((6-fluoro-4H-benzo[d][1,3]dioxin-8-yl)methyl)-3-(hydroxyimino)indolin-2-one

Xie, X., Jacobs, M.D.

(2009) Bioorg Med Chem Lett 19: 2891-2895

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein)
Unique Ligands	J72

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3GQV \| pdb_00003gqv	Download File View File

Lovastatin polyketide enoyl reductase (LovC) mutant K54S with bound NADP

Ames, B.D., Smith, P.T., Ma, S.M., Kaake, R., Wong, E.W., Wong, S.K., Xie, X., Li, J.W., Vederas, J.C., Tang, Y., Tsai, S.-C.

To be published

Released	2009-04-07
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Aspergillus terreus
Macromolecule	Enoyl reductase (protein)
Unique Ligands	GOL, NAP

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3I5Z \| pdb_00003i5z	Download File View File

Crystal structure of ERK2 bound to (S)-N-(2-hydroxy-1-phenylethyl)-4-(5-methyl-2-(phenylamino)pyrimidin-4-yl)-1H-pyrrole-2-carboxamide

Jacobs, M.D., Xie, X.

(2009) J Med Chem 52: 6362-6368

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	SO4, Z48

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3I60 \| pdb_00003i60	Download File View File

Crystal structure of ERK2 bound to (S)-4-(2-(2-chlorophenylamino)-5-methylpyrimidin-4-yl)-N-(2-hydroxy-1-phenylethyl)-1H-pyrrole-2-carboxamide

Jacobs, M.D., Xie, X.

(2009) J Med Chem 52: 6362-6368

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	E86, SO4

1 to 25 of 89 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1JNK | pdb_00001jnk

1JUO | pdb_00001juo

1PME | pdb_00001pme

1SCM | pdb_00001scm

1TAF | pdb_00001taf

1TKQ | pdb_00001tkq

1VZT | pdb_00001vzt

2LX6 | pdb_00002lx6

2M37 | pdb_00002m37

2MFV | pdb_00002mfv

2MLJ | pdb_00002mlj

2MMT | pdb_00002mmt

2MMW | pdb_00002mmw

2MXP | pdb_00002mxp

2NS2 | pdb_00002ns2

2OJG | pdb_00002ojg

2OJI | pdb_00002oji

2OJJ | pdb_00002ojj

2OK1 | pdb_00002ok1

3B6Z | pdb_00003b6z

3B70 | pdb_00003b70

3G90 | pdb_00003g90

3GQV | pdb_00003gqv

3I5Z | pdb_00003i5z

3I60 | pdb_00003i60