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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Xu, S.-Y."

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This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Aquipseudomonas alcaligenes (1)
	Bacillus pumilus (1)
	Geobacillus stearothermophilus (1)

Taxonomy

Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (3)

Polymer Entity Type

	Protein (3)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (2)

Enzyme Classification Name

	Hydrolases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (2)
	Cyclic (2)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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1DC1 \| pdb_00001dc1	Download File View File

RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD

van der Woerd, M.J., Pelletier, J.J., Xu, S.-Y., Friedman, A.M.

(2001) Structure 9: 133-144

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	BSOBI RESTRICTION ENDONUCLEASE (protein) DNA (5'-D(TAPTPAPCPTPCPGPAPGPTPAP*T)-3') (nucleic acid)
Unique Ligands	DIO

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3LDY \| pdb_00003ldy	Download File View File

An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI

Shen, B.W., Heiter, D., Chan, S.-H., Xu, S.-Y., Wilson, G., Stoddard, B.L.

(2010) Structure 18: 734-743

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Aquipseudomonas alcaligenes
Macromolecule	restriction endonuclease PacI (protein) DNA (5'-D(GPAPGPGPCPTPTPA)-3') (nucleic acid) DNA (5'-D(PAPTPTPAPAPGPCPCPTPC)-3') (nucleic acid)
Unique Ligands	CA, ZN

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3S1S \| pdb_00003s1s	Download File View File

Characterization and crystal structure of the type IIG restriction endonuclease BpuSI

Shen, B.W., Xu, D., Chan, S.-H., Zheng, Y., Zhu, Y., Xu, S.-Y., Stoddard, B.L.

(2011) Nucleic Acids Res 39: 8223-8236

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bacillus pumilus
Macromolecule	restriction endonuclease BpuSI (protein)
Unique Ligands	EDO, IOD, MN, SAH

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DC1 | pdb_00001dc1

RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD

3LDY | pdb_00003ldy

An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI

3S1S | pdb_00003s1s

Characterization and crystal structure of the type IIG restriction endonuclease BpuSI

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DC1 | pdb_00001dc1

RESTRICTION ENZYME BSOBI/DNA COMPLEX STRUCTURE: ENCIRCLEMENT OF THE DNA AND HISTIDINE-CATALYZED HYDROLYSIS WITHIN A CANONICAL RESTRICTION ENZYME FOLD

3LDY | pdb_00003ldy

An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI

3S1S | pdb_00003s1s

Characterization and crystal structure of the type IIG restriction endonuclease BpuSI