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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yu, L."

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Search Summary

This query matches 66 Structures.

Refinements

Structure Determination Methodology

experimental (66)

Scientific Name of Source Organism

	Homo sapiens (17)
	Bos taurus (12)
	synthetic construct (11)
	Streptococcus pneumoniae D39 (5)
	Streptococcus pneumoniae (3)
	Thermotoga maritima (3)
	Zika virus (3)
	Gallus gallus (2)
	Paramecium tetraurelia (2)
	Rattus norvegicus (2)

More...

Taxonomy

	Eukaryota (39)
	Bacteria (15)
	other sequences (11)
	Riboviria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (42)
	ELECTRON MICROSCOPY (13)
	SOLUTION NMR (10)
	SOLID-STATE NMR (1)

Polymer Entity Type

Protein (66)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (14)
	1.5 - 2.0 (3)
	2.0 - 2.5 (12)
	2.5 - 3.0 (15)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (11)
	2005 - 2009 (8)
	2010 - 2014 (7)
	2015 - 2019 (15)
	2020 - 2024 (21)

Enzyme Classification Name

	Oxidoreductases (19)
	Translocases (15)
	Hydrolases (13)
	Transferases (4)
	Isomerases (3)

Membrane Protein Annotation

	PDBTM (23)
	MemProtMD (16)
	OPM (10)
	mpstruc (9)

Symmetry Type

	Asymmetric (34)
	Cyclic (30)
	Dihedral (2)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (13)
	Alpha and beta proteins (a+b) (15)
	All beta proteins (20)
	All alpha proteins (15)
	Alpha and beta proteins (a/b) (3)
	Small proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 66 Structures

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1FLI \| pdb_00001fli	Download File View File

DNA-BINDING DOMAIN OF FLI-1

Liang, H., Mao, X., Olejniczak, E.T., Nettesheim, D.G., Yu, L., Meadows, R.P., Thompson, C.B., Fesik, S.W.

(1994) Nat Struct Biol 1: 871-875

Released	1995-09-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FLI-1 (protein)

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1IB8 \| pdb_00001ib8	Download File View File

SOLUTION STRUCTURE AND FUNCTION OF A CONSERVED PROTEIN SP14.3 ENCODED BY AN ESSENTIAL STREPTOCOCCUS PNEUMONIAE GENE

Yu, L., Gunasekera, A.H., Mack, J., Olejniczak, E.T., Chovan, L.E., Ruan, X., Towne, D.L., Lerner, C.G., Fesik, S.W.

(2001) J Mol Biology 311: 593-604

Released	2002-03-27
Method	SOLUTION NMR
Organisms	Streptococcus pneumoniae
Macromolecule	CONSERVED PROTEIN SP14.3 (protein)

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1L0L \| pdb_00001l0l	Download File View File

structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, FMX, HEM

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1L0N \| pdb_00001l0n	Download File View File

native structure of bovine mitochondrial cytochrome bc1 complex

Gao, X., Wen, X., Yu, C.A., Esser, L., Tsao, S., Quinn, B., Zhang, L., Yu, L., Xia, D.

(2003) Biochemistry 41: 11692-11702

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1NTK \| pdb_00001ntk	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Antimycin A1

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	AY1, FES, HEM

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1NTM \| pdb_00001ntm	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complex at 2.4 Angstrom

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM

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1NTZ \| pdb_00001ntz	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complex Bound with Ubiquinone

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, UQ2

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1NU1 \| pdb_00001nu1	Download File View File

Crystal Structure of Mitochondrial Cytochrome bc1 Complexed with 2-nonyl-4-hydroxyquinoline N-oxide (NQNO)

Gao, X., Wen, X., Esser, L., Quinn, B., Yu, L., Yu, C.-A., Xia, D.

(2003) Biochemistry 42: 9067-9080

Released	2003-10-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEM, QNO

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1Q3T \| pdb_00001q3t	Download File View File

Solution structure and function of an essential CMP kinase of Streptococcus pneumoniae

Yu, L., Mack, J., Hajduk, P.J., Kakavas, S.J., Saiki, A.Y., Lerner, C.G., Olejniczak, E.T.

(2003) Protein Sci 12: 2613-2621

Released	2004-08-03
Method	SOLUTION NMR
Organisms	Streptococcus pneumoniae
Macromolecule	Cytidylate kinase (protein)

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1QCR \| pdb_00001qcr	Download File View File

CRYSTAL STRUCTURE OF BOVINE MITOCHONDRIAL CYTOCHROME BC1 COMPLEX, ALPHA CARBON ATOMS ONLY

Xia, D., Yu, C.A., Kim, H., Xia, J.Z., Kachurin, A., Zhang, L., Yu, L., Deisenhofer, J.

(1997) Science 277: 60-66

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	HEM

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1SGL \| pdb_00001sgl	Download File View File

The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease

Gan, J.-H., Yu, L., Wu, J., Xu, H., Choudhary, J.S., Blackstock, W.P., Liu, W.-Y., Xia, Z.-X.

(2004) Structure 12: 1015-1025

Released	2004-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trichosanthes lepiniana
Macromolecule	trichomaglin (protein)
Unique Ligands	SO4

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1SQB \| pdb_00001sqb	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Azoxystrobin

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	AZO, FES, HEM

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1SQP \| pdb_00001sqp	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Myxothiazol

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	CDL, FES, HEC, MYX, PEE, PLX

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1SQQ \| pdb_00001sqq	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Methoxy Acrylate Stilbene (MOAS)

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-10-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, OST, UQ2

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1SQV \| pdb_00001sqv	Download File View File

Crystal Structure Analysis of Bovine Bc1 with UHDBT

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, UHD, UQ2

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1SQX \| pdb_00001sqx	Download File View File

Crystal Structure Analysis of Bovine Bc1 with Stigmatellin A

Esser, L., Quinn, B., Li, Y.F., Zhang, M., Elberry, M., Yu, L., Yu, C.A., Xia, D.

(2004) J Mol Biology 341: 281-302

Released	2005-09-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 11
Unique Ligands	FES, HEC, SMA, UQ2

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1SSK \| pdb_00001ssk	Download File View File

Structure of the N-terminal RNA-binding Domain of the SARS CoV Nucleocapsid Protein

Huang, Q., Yu, L., Petros, A.M., Gunasekera, A., Liu, Z., Xu, N., Hajduk, P., Mack, J., Fesik, S.W., Olejniczak, E.T.

(2004) Biochemistry 43: 6059-6063

Released	2004-06-08
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Nucleocapsid protein (protein)

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1XYH \| pdb_00001xyh	Download File View File

Crystal Structure of Recombinant Human Cyclophilin J

Huang, L.-L., Zhao, X.-M., Huang, C.-Q., Yu, L., Xia, Z.-X.

(2005) Acta Crystallogr D Biol Crystallogr 61: 316-321

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	cyclophilin-like protein PPIL3b (protein)

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1YUA \| pdb_00001yua	Download File View File

C-TERMINAL DOMAIN OF ESCHERICHIA COLI TOPOISOMERASE I

Yu, L., Zhu, C.-X., Tse-Dinh, Y.-C., Fesik, S.W.

(1995) Biochemistry 34: 7622-7628

Released	1996-03-08
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	TOPOISOMERASE I (protein)

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1YUB \| pdb_00001yub	Download File View File

SOLUTION STRUCTURE OF AN RRNA METHYLTRANSFERASE (ERMAM) THAT CONFERS MACROLIDE-LINCOSAMIDE-STREPTOGRAMIN ANTIBIOTIC RESISTANCE, NMR, MINIMIZED AVERAGE STRUCTURE

Yu, L., Petros, A.M., Schnuchel, A., Zhong, P., Severin, J.M., Walter, K., Holzman, T.F., Fesik, S.W.

(1997) Nat Struct Biol 4: 483-489

Released	1998-03-04
Method	SOLUTION NMR
Organisms	Streptococcus pneumoniae
Macromolecule	RRNA METHYLTRANSFERASE (protein)

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2A9H \| pdb_00002a9h	Download File View File

NMR structural studies of a potassium channel / charybdotoxin complex

Yu, L., Sun, C., Song, D., Shen, J., Xu, N., Gunasekera, A., Hajduk, P.J., Olejniczak, E.T.

(2005) Biochemistry 44: 15834-15841

Released	2006-01-10
Method	SOLUTION NMR
Organisms	Leiurus hebraeus Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein) charybdotoxin (protein)

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2ALF \| pdb_00002alf	Download File View File

crystal structure of human CypA mutant K131A

Hu, H., Huang, C.-Q., Liu, H.-L., Han, Y., Chen, M.-E., Yu, L., Bi, R.-C.

To be published

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	MG

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2E6W \| pdb_00002e6w	Download File View File

Solution structure and calcium binding properties of EF-hands 3 and 4 of calsenilin

Yu, L., Sun, C., Mendoza, R., Hebert, E., Pereda-Lopez, A., Hajduk, P.J., Olejniczak, E.T.

(2007) Protein Sci 16: 2502-2509

Released	2007-11-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calsenilin (protein)
Unique Ligands	CA

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2KXW \| pdb_00002kxw	Download File View File

Structure of the C-domain Fragment of apo Calmodulin Bound to the IQ motif of Nav1.2

Feldkamp, M.D., Yu, L., Shea, M.A.

(2011) Structure 19: 733-747

Released	2011-04-13
Method	SOLUTION NMR
Organisms	Paramecium tetraurelia Rattus norvegicus
Macromolecule	Calmodulin (protein) Sodium channel protein type 2 subunit alpha (protein)

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2M5E \| pdb_00002m5e	Download File View File

Structure of the C-domain of Calcium-saturated Calmodulin bound to the IQ motif of NaV1.2

Fowler, C.A., Feldkamp, M.D., Yu, L., Shea, M.A.

(2017) Biophys Chem 224: 1-19

Released	2014-07-23
Method	SOLUTION NMR
Organisms	Paramecium tetraurelia Rattus norvegicus
Macromolecule	Calmodulin (protein) Sodium channel protein type 2 subunit alpha (protein)
Unique Ligands	CA

1 to 25 of 66 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FLI | pdb_00001fli

1IB8 | pdb_00001ib8

1L0L | pdb_00001l0l

1L0N | pdb_00001l0n

1NTK | pdb_00001ntk

1NTM | pdb_00001ntm

1NTZ | pdb_00001ntz

1NU1 | pdb_00001nu1

1Q3T | pdb_00001q3t

1QCR | pdb_00001qcr

1SGL | pdb_00001sgl

1SQB | pdb_00001sqb

1SQP | pdb_00001sqp

1SQQ | pdb_00001sqq

1SQV | pdb_00001sqv

1SQX | pdb_00001sqx

1SSK | pdb_00001ssk

1XYH | pdb_00001xyh

1YUA | pdb_00001yua

1YUB | pdb_00001yub

2A9H | pdb_00002a9h

2ALF | pdb_00002alf

2E6W | pdb_00002e6w

2KXW | pdb_00002kxw

2M5E | pdb_00002m5e