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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zdanov, A."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Aequorea victoria (9)
	Homo sapiens (9)
	Feline immunodeficiency virus (4)
	Mus musculus (4)
	Escherichia coli (3)
	Equine infectious anemia virus (2)
	Hirudo medicinalis (2)
	Tobacco etch virus (2)
	Arabidopsis thaliana (1)
	Bos taurus (1)

More...

Taxonomy

	Eukaryota (25)
	Riboviria (10)
	Bacteria (3)
	Eukaryota (eukaryotes) (2)
	Duplodnaviria (1)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

X-RAY DIFFRACTION (39)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (22)
	2.5 - 3.0 (3)

Release Date

	1990 - 1994 (7)
	1995 - 1999 (21)
	2000 - 2004 (8)
	2005 - 2009 (1)
	2010 - 2014 (2)

Enzyme Classification Name

	Hydrolases (13)
	Lyases (4)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (21)
	Dihedral (6)

SCOP Classification

	All beta proteins (19)
	Alpha and beta proteins (a+b) (10)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (5)
	Artifacts (2)

AllSelected

1 to 25 of 39 Structures

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1EMC \| pdb_00001emc	Download File View File

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

Palm, G., Zdanov, A., Wlodawer, A.

(1997) Nat Struct Biol 4: 361-365

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1EME \| pdb_00001eme	Download File View File

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

Palm, G., Zdanov, A., Wlodawer, A.

(1997) Nat Struct Biol 4: 361-365

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1EMF \| pdb_00001emf	Download File View File

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

Palm, G., Zdanov, A., Wlodawer, A.

(1997) Nat Struct Biol 4: 361-365

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1EMK \| pdb_00001emk	Download File View File

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

Palm, G., Zdanov, A., Wlodawer, A.

(1997) Nat Struct Biol 4: 361-365

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1EML \| pdb_00001eml	Download File View File

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

Palm, G., Zdanov, A., Wlodawer, A.

(1997) Nat Struct Biol 4: 361-365

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1EMM \| pdb_00001emm	Download File View File

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

Palm, G., Zdanov, A., Wlodawer, A.

(1997) Nat Struct Biol 4: 361-365

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

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1FIV \| pdb_00001fiv	Download File View File

STRUCTURE OF AN INHIBITOR COMPLEX OF PROTEINASE FROM FELINE IMMUNODEFICIENCY VIRUS

Wlodawer, A., Gustchina, A., Reshetnikova, L., Lubkowski, J., Zdanov, A.

(1995) Nat Struct Biol 2: 480-488

Released	1995-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Feline immunodeficiency virus
Macromolecule	FIV PROTEASE (protein) FIV PROTEASE INHIBITOR ACE-ALN-VAL-STA-GLU-ALN-NH2 (protein)

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1FMB \| pdb_00001fmb	Download File View File

EIAV PROTEASE COMPLEXED WITH THE INHIBITOR HBY-793

Wlodawer, A., Gustchina, A., Zdanov, A., Kervinen, J.

(1996) Protein Sci 5: 1453-1465

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Equine infectious anemia virus
Macromolecule	EIAV PROTEASE (protein)
Unique Ligands	HYB

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1FSI \| pdb_00001fsi	Download File View File

CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE OF APPR>P FROM ARABIDOPSIS THALIANA

Hofmann, A., Zdanov, A., Genschik, P., Filipowicz, W., Ruvinov, S., Wlodawer, A.

(2000) EMBO J 19: 6207-6217

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	CYCLIC PHOSPHODIESTERASE (protein)
Unique Ligands	SO4

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1I8J \| pdb_00001i8j	Download File View File

CRYSTAL STRUCTURE OF PORPHOBILINOGEN SYNTHASE COMPLEXED WITH THE INHIBITOR 4,7-DIOXOSEBACIC ACID

Kervinen, J., Jaffe, E.K., Stauffer, F., Neier, R., Wlodawer, A., Zdanov, A.

(2001) Biochemistry 40: 8227-8236

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	PORPHOBILINOGEN SYNTHASE (protein)
Unique Ligands	DSB, MG, ZN

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1IHS \| pdb_00001ihs	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN ALPHA-THROMBIN AND NON-HYDROLYZABLE BIFUNCTIONAL INHIBITORS, HIRUTONIN-2 AND HIRUTONIN-6

Zdanov, A., Cygler, M.

(1993) Proteins 17: 252-265

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUTONIN (protein)

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1IHT \| pdb_00001iht	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN ALPHA-THROMBIN AND NON-HYDROLYZABLE BIFUNCTIONAL INHIBITORS, HIRUTONIN-2 AND HIRUTONIN-6

Zdanov, A., Cygler, M.

(1993) Proteins 17: 252-265

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUTONIN-6 (protein)

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1ILK \| pdb_00001ilk	Download File View File

INTERLEUKIN-10 CRYSTAL STRUCTURE REVEALS THE FUNCTIONAL DIMER WITH AN UNEXPECTED TOPOLOGICAL SIMILARITY TO INTERFERON GAMMA

Zdanov, A., Schalk-Hihi, C., Gustchina, A., Wlodawer, A.

(1995) Structure 3: 591-601

Released	1995-07-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN-10 (protein)

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1L6S \| pdb_00001l6s	Download File View File

Crystal Structure of Porphobilinogen Synthase Complexed with the Inhibitor 4,7-Dioxosebacic Acid

Jaffe, E.K., Kervinen, J., Martins, J., Stauffer, F., Neier, R., Wlodawer, A., Zdanov, A.

(2002) J Biological Chem 277: 19792-19799

Released	2002-04-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PORPHOBILINOGEN SYNTHASE (protein)
Unique Ligands	DSB, MG, ZN

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1L6Y \| pdb_00001l6y	Download File View File

Crystal Structure of Porphobilinogen Synthase Complexed with the Inhibitor 4-Oxosebacic Acid

Jaffe, E.K., Kervinen, J., Martins, J., Stauffer, F., Neier, R., Wlodawer, A., Zdanov, A.

(2002) J Biological Chem 277: 19792-19799

Released	2002-04-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	PORPHOBILINOGEN SYNTHASE (protein)
Unique Ligands	4OX, GOL, MG, ZN

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1LVB \| pdb_00001lvb	Download File View File

CATALYTICALLY INACTIVE TOBACCO ETCH VIRUS PROTEASE COMPLEXED WITH SUBSTRATE

Phan, J., Zdanov, A., Evdokimov, A.G., Tropea, J.E., Peters III, H.K., Kapust, R.B., Li, M., Wlodawer, A., Waugh, D.S.

(2002) J Biological Chem 277: 50564-50572

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tobacco etch virus
Macromolecule	CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) (protein) OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE (protein)
Unique Ligands	GOL

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1LVM \| pdb_00001lvm	Download File View File

CATALYTICALLY ACTIVE TOBACCO ETCH VIRUS PROTEASE COMPLEXED WITH PRODUCT

Phan, J., Zdanov, A., Evdokimov, A.G., Tropea, J.E., Peters III, H.K., Kapust, R.B., Li, M., Wlodawer, A., Waugh, D.S.

(2002) J Biological Chem 277: 50564-50572

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tobacco etch virus
Macromolecule	CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA) (protein) OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE (protein)

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1MFA \| pdb_00001mfa	Download File View File

STRUCTURE OF A SINGLE-CHAIN FV FRAGMENT COMPLEXED WITH A CARBOHYDRATE ANTIGEN AT 1.7 ANGSTROMS RESOLUTION

Zdanov, A., Cygler, M.

(1994) Proc Natl Acad Sci U S A 91: 6423-6427

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) (protein) IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) (protein)
Unique branched monosaccharides	ABE, GLA, MMA

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1MFB \| pdb_00001mfb	Download File View File

HIGH RESOLUTION STRUCTURES OF ANTIBODY FAB FRAGMENT COMPLEXED WITH CELL-SURFACE OLIGOSACCHARIDE OF PATHOGENIC SALMONELLA

Zdanov, A., Cygler, M.

(1993) Biochem Soc Trans 21: 437-441

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) (protein) IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) (protein)
Unique branched monosaccharides	ABE, GLA, MAN, RAM

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1MFC \| pdb_00001mfc	Download File View File

HIGH RESOLUTION STRUCTURES OF ANTIBODY FAB FRAGMENT COMPLEXED WITH CELL-SURFACE OLIGOSACCHARIDE OF PATHOGENIC SALMONELLA

Zdanov, A., Cygler, M.

(1993) Biochem Soc Trans 21: 437-441

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) (protein) IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) (protein)
Unique branched monosaccharides	ABE, GLA, MAN, RAM

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1MFD \| pdb_00001mfd	Download File View File

THE SOLUTION STRUCTURE OF A TRISACCHARIDE-ANTIBODY COMPLEX: COMPARISON OF NMR MEASUREMENTS WITH A CRYSTAL STRUCTURE

Zdanov, A., Cygler, M.

(1994) Biochemistry 33: 5183-5192

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN) (protein) IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) (protein)
Unique branched monosaccharides	ABE, GLA, MMA

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1N1F \| pdb_00001n1f	Download File View File

Crystal Structure of Human Interleukin-19

Chang, C., Magracheva, E., Kozlov, S., Fong, S., Tobin, G., Kotenko, S., Wlodawer, A., Zdanov, A.

(2003) J Biological Chem 278: 3308-3313

Released	2003-02-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	interleukin-19 (protein)
Unique Ligands	NAG

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1ODX \| pdb_00001odx	Download File View File

HIV-1 Proteinase mutant A71T, V82A

Kervinen, J., Thanki, N., Zdanov, A., Wlodawer, A.

(1996) Protein Pept Lett 3: 399

Released	1997-04-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	0E8

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1ODY \| pdb_00001ody	Download File View File

HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR LP-130

Kervinen, J., Lubkowski, J., Zdanov, A., Wlodawer, A., Gustchina, A.

(1998) Protein Sci 7: 2314-2323

Released	1999-02-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	LP1

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1PV8 \| pdb_00001pv8	Download File View File

Crystal structure of a low activity F12L mutant of human porphobilinogen synthase

Breinig, S., Kervinen, J., Stith, L., Wasson, A.S., Fairman, R., Wlodawer, A., Zdanov, A., Jaffe, E.K.

(2003) Nat Struct Biol 10: 757-763

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Delta-aminolevulinic acid dehydratase (protein)
Unique Ligands	PB1, ZN

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EMC | pdb_00001emc

1EME | pdb_00001eme

1EMF | pdb_00001emf

1EMK | pdb_00001emk

1EML | pdb_00001eml

1EMM | pdb_00001emm

1FIV | pdb_00001fiv

1FMB | pdb_00001fmb

1FSI | pdb_00001fsi

1I8J | pdb_00001i8j

1IHS | pdb_00001ihs

1IHT | pdb_00001iht

1ILK | pdb_00001ilk

1L6S | pdb_00001l6s

1L6Y | pdb_00001l6y

1LVB | pdb_00001lvb

1LVM | pdb_00001lvm

1MFA | pdb_00001mfa

1MFB | pdb_00001mfb

1MFC | pdb_00001mfc

1MFD | pdb_00001mfd

1N1F | pdb_00001n1f

1ODX | pdb_00001odx

1ODY | pdb_00001ody

1PV8 | pdb_00001pv8