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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhu, H."

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Search Summary

This query matches 137 Structures.

Refinements

Structure Determination Methodology

experimental (137)

Scientific Name of Source Organism

	Homo sapiens (56)
	Danio rerio (22)
	synthetic construct (12)
	Rattus norvegicus (10)
	Bacillus subtilis A29 (9)
	Candidatus Cloacimonetes bacterium ADurb.Bin088 (6)
	Thermoflavifilum thermophilum (5)
	Bos taurus (4)
	Selenomonas sp. (4)
	Escherichia coli (3)

More...

Taxonomy

	Eukaryota (95)
	Bacteria (36)
	other sequences (12)
	Monodnaviria (2)
	Archaea (1)
	Duplodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (78)
	X-RAY DIFFRACTION (56)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (137)
	RNA (14)
	DNA (13)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (18)
	2.0 - 2.5 (19)
	2.5 - 3.0 (27)
	3.0 - 3.5 (33)
	3.5 - 4.0 (15)
	4.0 - 4.5 (11)
	> 4.5 (4)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (19)
	2010 - 2014 (6)
	2015 - 2019 (26)
	2020 - 2024 (73)
	2025 - 2029 (9)

Enzyme Classification Name

	Hydrolases (32)
	Transferases (25)
	Oxidoreductases (9)
	Lyases (4)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (27)
	OPM (26)
	mpstruc (23)
	MemProtMD (24)

Symmetry Type

	Asymmetric (75)
	Cyclic (60)
	Dihedral (2)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (2)
	Artifacts (2)
	Coiled coil proteins (1)
	All alpha proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 137 Structures

Page 1 of 6

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1CEH	Download File View File

STRUCTURE AND FUNCTION OF THE CATALYTIC SITE MUTANT ASP99ASN OF PHOSPHOLIPASE A2: ABSENCE OF CONSERVED STRUCTURAL WATER

Kumar, A., Sekharudu, C., Ramakrishnan, B., Dupureur, C.M., Zhu, H., Tsai, M.-D., Sundaralingam, M.

(1994) Protein Sci 3: 2082-2088

Released	1995-02-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1EJ8	Download File View File

CRYSTAL STRUCTURE OF DOMAIN 2 OF THE YEAST COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE (LYS7) AT 1.55 A RESOLUTION

Hall, L.T., Sanchez, R.J., Holloway, S.P., Zhu, H., Stine, J.E., Lyons, T.J., Demeler, B., Schirf, V., Hansen, J.C., Nersissian, A.M., Valentine, J.S., Hart, P.J.

(2000) Biochemistry 39: 3611-3623

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	LYS7 (protein)
Unique Ligands	CA

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1R1N	Download File View File

Tri-nuclear oxo-iron clusters in the ferric binding protein from N. gonorrhoeae

Zhu, H., Alexeev, D., Hunter, D.J., Campopiano, D.J., Sadler, P.J.

(2003) Biochem J 376: 35-41

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Ferric-iron Binding Protein (protein)
Unique Ligands	CN1, CNB, CNF

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1XC1	Download File View File

Oxo Zirconium(IV) Cluster in the Ferric Binding Protein (FBP)

Zhong, W., Alexeev, D., Harvey, I., Guo, M., Hunter, D.J.B., Zhu, H., Campopiano, D.J., Sadler, P.J.

(2004) Angew Chem Int Ed Engl 43: 5914-5918

Released	2004-09-21
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	periplasmic iron-binding protein (protein)
Unique Ligands	ZRC

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2FAO	Download File View File

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain

Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.

(2006) Proc Natl Acad Sci U S A 103: 1711-1716

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	probable ATP-dependent DNA ligase (protein)
Unique Ligands	SO4

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2FAQ	Download File View File

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with ATP and Manganese

Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.

(2006) Proc Natl Acad Sci U S A 103: 1711-1716

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	probable ATP-dependent DNA ligase (protein)
Unique Ligands	ATP, MN, SO4

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2FAR	Download File View File

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese

Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L.K., Glickman, M.S., Lima, C.D., Shuman, S.

(2006) Proc Natl Acad Sci U S A 103: 1711-1716

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	probable ATP-dependent DNA ligase (protein)
Unique Ligands	DTP, MN, SO4

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2IA5	Download File View File

T4 polynucleotide kinase/phosphatase with bound sulfate and magnesium.

Zhu, H., Smith, P.C., Wang, L.K., Lima, C.D., Shuman, S.

(2007) Virology 366: 126-136

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Tequatrovirus T4
Macromolecule	Polynucleotide kinase (protein)
Unique Ligands	ARS, MG, SO4

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2NZT	Download File View File

Crystal structure of human hexokinase II

Rabeh, W.M., Zhu, H., Nedyalkova, L., Tempel, W., Wasney, G., Landry, R., Vedadi, M., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

(2018) Biosci Rep 38:

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Hexokinase-2 (protein)
Unique Ligands	BG6, GLC, UNX

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2O52	Download File View File

Crystal structure of human RAB4B in complex with GDP

Zhu, H., Tempel, W., Wang, J., Shen, Y., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-4B (protein)
Unique Ligands	BME, GDP, MG, UNX

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2OIL	Download File View File

Crystal structure of human RAB25 in complex with GDP

Zhu, H., Wang, J., Shen, Y., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-25 (protein)
Unique Ligands	GDP, MG, UNX

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2P57	Download File View File

GAP domain of ZNF289, an ID1-regulated zinc finger protein

Tong, Y., Dimov, S., Shen, L., Zhu, H., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	GTPase-activating protein ZNF289 (protein)
Unique Ligands	UNX, ZN

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2P5S	Download File View File

RAB domain of human RASEF in complex with GDP

Zhu, H., Wang, J., Shen, Y., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-03-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	RAS and EF-hand domain containing (protein)
Unique Ligands	GDP, UNX

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2PMY	Download File View File

EF-hand domain of human RASEF

Zhu, H., Shen, Y., Wang, J., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	RAS and EF-hand domain-containing protein (protein)
Unique Ligands	CA, SO4, UNX

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2PXX	Download File View File

Human putative methyltransferase MGC2408

Tempel, W., Wu, H., Dombrovsky, L., Zeng, H., Zhu, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

(2009) Proteins 74: 789-793

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein MGC2408 (protein)
Unique Ligands	SAH, UNX

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2R13	Download File View File

Crystal structure of human mitoNEET reveals a novel [2Fe-2S] cluster coordination

Hou, X., Liu, R., Ross, S., Smart, E.J., Zhu, H., Gong, W.

(2007) J Biological Chem 282: 33242-33246

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Zinc finger CDGSH domain-containing protein 1 (protein)
Unique Ligands	CL, FES

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3B6U	Download File View File

Crystal structure of the motor domain of human kinesin family member 3B in complex with ADP

Zhu, H., Shen, Y., Tempel, W., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Kinesin-like protein KIF3B (protein)
Unique Ligands	ADP, MG, UNX

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3B6V	Download File View File

Crystal structure of the motor domain of human kinesin family member 3C in complex with ADP

Zhu, H., Tempel, W., Shen, Y., Landry, R., Arrowsmith, C.H., Edwards, A.M., Sundstrom, M., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2007-11-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Kinesin-like protein KIF3C (protein)
Unique Ligands	ADP, MG, UNX

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3CEQ	Download File View File

The TPR domain of Human Kinesin Light Chain 2 (hKLC2)

Zhu, H., Shen, Y., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2008-08-12
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Kinesin light chain 2 (protein)

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3CEY	Download File View File

Crystal structure of L3MBTL2

Nady, N., Guo, Y., Pan, P., Allali-Hassani, A., Qi, C., Zhu, H., Dong, A., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Edwards, A.M., Weigelt, J., Bountra, C., Arrowsmith, C.H., Bochkarev, A., Read, R., Min, J., Structural Genomics Consortium (SGC)

(2009) Nucleic Acids Res 37: 2204-2210

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like 2 protein (protein)

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3ECQ	Download File View File

Endo-alpha-N-acetylgalactosaminidase from Streptococcus pneumoniae: SeMet structure

Caines, M.E.C., Zhu, H., Vuckovic, M., Strynadka, N.C.J.

(2008) J Biological Chem 283: 31279-31283

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	Endo-alpha-N-acetylgalactosaminidase (protein)
Unique Ligands	CA, GOL, NA

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3EDT	Download File View File

Crystal structure of the mutated S328N hKLC2 TPR domain

Zhu, H., Shen, Y., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Kinesin light chain 2 (protein)
Unique Ligands	UNX

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3F70	Download File View File

Crystal structure of L3MBTL2-H4K20me1 complex

Guo, Y., Qi, C., Allali-Hassani, A., Pan, P., Zhu, H., Dong, A., Mackenzie, F., Crombet, L., Loppnau, P., Kozieradzki, I., Vedadi, M., Edwards, A.M., Weigelt, J., Bountra, C., Arrowsmith, C.H., Botchkarev, A., Read, R., Min, J., Structural Genomics Consortium (SGC)

(2009) Nucleic Acids Res 37: 2204-2210

Released	2009-01-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Lethal(3)malignant brain tumor-like 2 protein (protein)
Unique Ligands	MLZ