RCSB PDB: Search

1QYS \| pdb_00001qys	Download File View File

Crystal structure of Top7: A computationally designed protein with a novel fold

Kuhlman, B., Dantas, G., Ireton, G.C., Varani, G., Stoddard, B.L., Baker, D.

(2003) Science 302: 1364-1368

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	TOP7 (protein)

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1VJQ \| pdb_00001vjq	Download File View File

Designed protein based on backbone conformation of procarboxypeptidase-A (1AYE) with sidechains chosen for maximal predicted stability.

Merritt, E.A., Baker, D., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.098 Å
Macromolecule	designed protein (protein)

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2A3J \| pdb_00002a3j	Download File View File

Structure of URNdesign, a complete computational redesign of human U1A protein

Varani, G., Dobson, N., Dantas, G., Baker, D.

(2006) Structure 14: 847-856

Released	2006-06-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein)

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2GJF \| pdb_00002gjf	Download File View File

NMR structure of the computationally designed procarboxypeptidase-A (1AYE) domain

Reichow, S.

(2007) J Mol Biology 366: 1209-1221

Released	2007-01-16
Method	SOLUTION NMR
Macromolecule	DESIGNED PROTEIN (protein)

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2GJH \| pdb_00002gjh	Download File View File

NMR Structure of CFr (C-terminal fragment of computationally designed novel-topology protein Top7)

Dantas, G.

(2006) J Mol Biology 362: 1004-1024

Released	2006-10-17
Method	SOLUTION NMR
Macromolecule	DESIGNED PROTEIN (protein)

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5F46 \| pdb_00005f46	Download File View File

Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample, apoenzyme form

Xu, Z., Skarina, T., Stogios, P.J., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) ACS Infect Dis 3: 653-665

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	uncultured bacterium
Macromolecule	aminoglycoside acetyltransferase meta-AAC0020 (protein)
Unique Ligands	CL

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5F47 \| pdb_00005f47	Download File View File

Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with trehalose

Xu, Z., Skarina, T., Wawrzak, Z., Stogios, P.J., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) ACS Infect Dis 3: 653-665

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.497 Å
Organisms	uncultured bacterium
Macromolecule	aminoglycoside acetyltransferase meta-AAC0020 (protein)
Unique Ligands	CA, CL
Unique branched monosaccharides	GLC

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5F48 \| pdb_00005f48	Download File View File

Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with coenzyme A

Xu, Z., Skarina, T., Stogios, P.J., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) ACS Infect Dis 3: 653-665

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	uncultured bacterium
Macromolecule	aminoglycoside acetyltransferase meta-AAC0020 (protein)
Unique Ligands	CL, COA, MG

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5F49 \| pdb_00005f49	Download File View File

Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with malonyl-coenzyme A

Xu, Z., Skarina, T., Stogios, P.J., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) ACS Infect Dis 3: 653-665

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	uncultured bacterium
Macromolecule	aminoglycoside acetyltransferase meta-AAC0020 (protein)
Unique Ligands	COA, MG, MLC

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5HT0 \| pdb_00005ht0	Download File View File

Crystal structure of an Antibiotic_NAT family aminoglycoside acetyltransferase HMB0038 from an uncultured soil metagenomic sample in complex with coenzyme A

Xu, Z., Stogios, P.J., Wawrzak, Z., Skarina, T., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.752 Å
Organisms	uncultured bacterium
Macromolecule	Aminoglycoside acetyltransferase HMB0005 (protein)
Unique Ligands	COA, SO4

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5TUE \| pdb_00005tue	Download File View File

Crystal structure of tetracycline destructase Tet(50)

Park, J., Tolia, N.H.

(2017) Nat Chem Biol 13: 730-736

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	uncultured bacterium
Macromolecule	Tetracycline destructase Tet(50) (protein)
Unique Ligands	FAD, SO4

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5TUF \| pdb_00005tuf	Download File View File

Crystal structure of tetracycline destructase Tet(50) in complex with anhydrotetracycline

Park, J., Tolia, N.H.

(2017) Nat Chem Biol 13: 730-736

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	uncultured bacterium
Macromolecule	Tetracycline destructase Tet(50) (protein)
Unique Ligands	FAD, SO4, TDC

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5TUI \| pdb_00005tui	Download File View File

Crystal structure of tetracycline destructase Tet(50) in complex with chlortetracycline

Park, J., Tolia, N.H.

(2017) Nat Chem Biol 13: 730-736

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	uncultured bacterium
Macromolecule	Tetracycline destructase Tet(50) (protein)
Unique Ligands	CTC, FAD, SO4

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5TUK \| pdb_00005tuk	Download File View File

Crystal structure of tetracycline destructase Tet(51)

Park, J., Tolia, N.H.

(2017) Nat Chem Biol 13: 730-736

Released	2017-05-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	uncultured bacterium
Macromolecule	Tetracycline destructase Tet(51) (protein)
Unique Ligands	FAD, GOL

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5TUL \| pdb_00005tul	Download File View File

Crystal structure of tetracycline destructase Tet(55)

Park, J., Tolia, N.H.

(2017) Nat Chem Biol 13: 730-736

Released	2017-05-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	uncultured bacterium
Macromolecule	Tetracycline destructase Tet(55) (protein)
Unique Ligands	PO4

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5TUM \| pdb_00005tum	Download File View File

Crystal structure of tetracycline destructase Tet(56)

Park, J., Tolia, N.H.

(2017) Nat Chem Biol 13: 730-736

Released	2017-05-10
Method	X-RAY DIFFRACTION 3.299 Å
Organisms	Legionella longbeachae
Macromolecule	tetracycline destructase Tet(56) (protein)
Unique Ligands	FAD

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5U08 \| pdb_00005u08	Download File View File

Crystal structure of an aminoglycoside acetyltransferase meta-AAC0020 from an uncultured soil metagenomic sample in complex with sisomicin

Xu, Z., Skarina, T., Wawrzak, Z., Stogios, P.J., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2017) ACS Infect Dis 3: 653-665

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	uncultured bacterium
Macromolecule	aminoglycoside acetyltransferase meta-AAC0020 (protein)
Unique Ligands	ACT, CA, MG, SIS

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6MMZ \| pdb_00006mmz	Download File View File

Crystal structure of meta-AAC0038, an environmental aminoglycoside resistance enzyme, H29A mutant apoenzyme

Stogios, P.J., Skarina, T., Xu, Z., Yim, V., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2018-10-24
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	uncultured bacterium
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	CL, SO4

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6MN0 \| pdb_00006mn0	Download File View File

Crystal structure of meta-AAC0038, an environmental aminoglycoside resistance enzyme, H168A mutant in complex with acetyl-CoA

Stogios, P.J., Skarina, T., Zu, X., Yim, V., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	uncultured bacterium
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	ACO, CL, GOL, PE3, SO4

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6MN3 \| pdb_00006mn3	Download File View File

Crystal structure of aminoglycoside acetyltransferase AAC(3)-IVa, apoenzyme

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Aminoglycoside N(3)-acetyltransferase, AAC(3)-IVa (protein)
Unique Ligands	CL, ZN

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6MN4 \| pdb_00006mn4	Download File View File

Crystal structure of aminoglycoside acetyltransferase AAC(3)-IVa, H154A mutant, in complex with apramycin

Stogios, P.J., Evdokimova, E., Michalska, K., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Aminoglycoside N(3)-acetyltransferase, AAC(3)-IVa (protein)
Unique Ligands	AM2, EDO, EPE, GOL, PO4, ZN

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6MN5 \| pdb_00006mn5	Download File View File

Crystal structure of aminoglycoside acetyltransferase AAC(3)-IVa, H154A mutant, in complex with gentamicin C1A

Stogios, P.J., Evdokimova, E., Kim, Y., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2018-10-24
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Escherichia coli
Macromolecule	Aminoglycoside N(3)-acetyltransferase, AAC(3)-IVa (protein)
Unique Ligands	EDO, EPE, GOL, LLL, PE3, ZN

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6WG9 \| pdb_00006wg9	Download File View File

Crystal structure of tetracycline destructase Tet(X7)

Kumar, H., Tolia, N.H.

(2020) Commun Biol 3: 241-241

Released	2021-02-10
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Tetracycline destructase Tet(X7) (protein)
Unique Ligands	FAD

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7KES \| pdb_00007kes	Download File View File

Crystal structure of meta-AAC0038, an environmental aminoglycoside resistance enzyme, mutant H168A in complex with apramycin and CoA

Stogios, P.J., Skarina, T., Michalska, K., Xu, Z., Yim, V., Savchenko, A., Joachimiak, A., Satchell, K.J., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2020-10-21
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	uncultured bacterium
Macromolecule	Aminoglycoside N(3)-acetyltransferase (protein)
Unique Ligands	AM2, CL, COA, GOL

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7LAO \| pdb_00007lao	Download File View File

Crystal structure of aminoglycoside acetyltransferase AAC(3)-IIb

Stogios, P.J., Evdokimova, E., Osipiuk, J., Di Leo, R., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2022) Commun Biol 5: 263-263

Released	2021-01-20
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Serratia marcescens
Macromolecule	Aminoglycoside N(3)-acetyltransferase III (protein)
Unique Ligands	EPE, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1QYS | pdb_00001qys

1VJQ | pdb_00001vjq

2A3J | pdb_00002a3j

2GJF | pdb_00002gjf

2GJH | pdb_00002gjh

5F46 | pdb_00005f46

5F47 | pdb_00005f47

5F48 | pdb_00005f48

5F49 | pdb_00005f49

5HT0 | pdb_00005ht0

5TUE | pdb_00005tue

5TUF | pdb_00005tuf

5TUI | pdb_00005tui

5TUK | pdb_00005tuk

5TUL | pdb_00005tul

5TUM | pdb_00005tum

5U08 | pdb_00005u08

6MMZ | pdb_00006mmz

6MN0 | pdb_00006mn0

6MN3 | pdb_00006mn3

6MN4 | pdb_00006mn4

6MN5 | pdb_00006mn5

6WG9 | pdb_00006wg9

7KES | pdb_00007kes

7LAO | pdb_00007lao