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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Aebersold, R."

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

	Homo sapiens (26)
	Saccharomyces cerevisiae S288C (10)
	Sus scrofa (4)
	Arabidopsis thaliana (2)
	Oryctolagus cuniculus (2)
	Xenopus laevis (2)
	Caenorhabditis elegans (1)
	Mammalian orthoreovirus 3 Dearing (1)
	Saccharomyces cerevisiae (1)
	Saccharomyces cerevisiae YJM789 (1)

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Taxonomy

	Eukaryota (47)
	Riboviria (1)
	Varidnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (30)
	X-RAY DIFFRACTION (14)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (47)
	RNA (8)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (7)
	3.5 - 4.0 (10)
	> 4.5 (18)

Release Date

	2010 - 2014 (15)
	2015 - 2019 (25)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (5)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

PDBTM (2)

Symmetry Type

	Asymmetric (38)
	Cyclic (10)

SCOP Classification

Low resolution protein structures (2)

AllSelected

1 to 25 of 47 Structures

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3J8B \| pdb_00003j8b	Download File View File

Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map

Erzberger, J.P., Ban, N.

(2014) Cell 158: 1123-1135

Released	2014-10-22
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8

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3J8C \| pdb_00003j8c	Download File View File

Model of the human eIF3 PCI-MPN octamer docked into the 43S EM map

Erzberger, J.P., Ban, N.

(2014) Cell 158: 1123-1135

Released	2014-10-22
Method	ELECTRON MICROSCOPY 11.6 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8

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3TJ1 \| pdb_00003tj1	Download File View File

Crystal Structure of RNA Polymerase I Transcription Initiation Factor Rrn3

Blattner, C., Jennebach, S., Herzog, F., Mayer, A., Cheung, A.C.M., Witte, G., Lorenzen, K., Hopfner, K.-P., Heck, A.J.R., Aebersold, R., Cramer, P.

(2011) Genes Dev 25: 2093-2105

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	RNA polymerase I-specific transcription initiation factor RRN3 (protein)

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4CE4 \| pdb_00004ce4	Download File View File

39S large subunit of the porcine mitochondrial ribosome

Greber, B.J., Boehringer, D., Leitner, A., Bieri, P., Voigts-Hoffmann, F., Erzberger, J.P., Leibundgut, M., Aebersold, R., Ban, N.

(2014) Nature 505: 515

Released	2013-12-18
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Sus scrofa domesticus
Macromolecule	Unique protein chains: 35 Unique nucleic acid chains: 2
Unique Ligands	ZN

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4OUC \| pdb_00004ouc	Download File View File

Structure of human haspin in complex with histone H3 substrate

Chaikuad, A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

(2014) Mol Cell Proteomics 13: 1724-1740

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.2 (protein) Serine/threonine-protein kinase haspin (protein)
Unique Ligands	5ID, EDO, IOD, NA

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4QFT \| pdb_00004qft	Download File View File

Structure of COP9 signalosome complex subunit 6

Birol, M., Hoh, F., Dumas, C., Echalier, A.

(2014) PLoS One 9: e105688-e105688

Released	2014-09-03
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	COP9 signalosome complex subunit 6 (protein)

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4U1C \| pdb_00004u1c	Download File View File

Crystal structure of the eIF3a/eIF3c PCI-domain heterodimer

Erzberger, J.P., Schaefer, T., Ban, N.

(2014) Cell 158: 1123-1135

Released	2014-09-10
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Eukaryotic translation initiation factor 3 subunit A (protein) Eukaryotic translation initiation factor 3 subunit C (protein)

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4U1D \| pdb_00004u1d	Download File View File

Structure of the PCI domain of translation initiation factor eIF3a

Erzberger, J.P., Schaefer, T., Ban, N.

(2014) Cell 158: 1123-1135

Released	2014-09-10
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Eukaryotic translation initiation factor 3 subunit A (protein)

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4U1E \| pdb_00004u1e	Download File View File

Crystal structure of the eIF3b-CTD/eIF3i/eIF3g-NTD translation initiation complex

Zhang, S., Erzberger, J.P., Schaefer, T., Ban, N.

(2014) Cell 158: 1123-1135

Released	2014-09-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae S288C Saccharomyces cerevisiae YJM789
Macromolecule	Eukaryotic translation initiation factor 3 subunit B (protein) Eukaryotic translation initiation factor 3 subunit G (protein) Eukaryotic translation initiation factor 3 subunit I (protein)

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4U1F \| pdb_00004u1f	Download File View File

Crystal structure of middle domain of eukaryotic translation initiation factor eIF3b

Zhang, S., Erzberger, J.P., Schaefer, T., Ban, N.

(2014) Cell 158: 1123-1135

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Eukaryotic translation initiation factor 3 subunit B (protein)

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4UWA \| pdb_00004uwa	Download File View File

Structure of the ryanodine receptor at resolution of 6.1 A in closed state

Efremov, R.G., Leitner, A., Aebersold, R., Raunser, S.

(2015) Nature 517: 39

Released	2014-12-10
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	RYANODINE RECEPTOR 1 (protein)

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4UWE \| pdb_00004uwe	Download File View File

Structure of the ryanodine receptor at resolution of 8.5 A in partially open state

Efremov, R.G., Leitner, A., Aebersold, R., Raunser, S.

(2015) Nature 517: 39

Released	2014-12-10
Method	ELECTRON MICROSCOPY 8.5 Å
Organisms	Oryctolagus cuniculus
Macromolecule	RYANODINE RECEPTOR 1 (protein)

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4V19 \| pdb_00004v19	Download File View File

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Greber, B.J., Boehringer, D., Leibundgut, M., Bieri, P., Leitner, A., Schmitz, N., Aebersold, R., Ban, N.

(2014) Nature 515: 283

Released	2014-10-08
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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4V1A \| pdb_00004v1a	Download File View File

Structure of the large subunit of the mammalian mitoribosome, part 2 of 2

Greber, B.J., Boehringer, D., Leibundgut, M., Bieri, P., Leitner, A., Schmitz, N., Aebersold, R., Ban, N.

(2014) Nature 515: 283

Released	2014-10-08
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 23
Unique Ligands	ZN

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4V94 \| pdb_00004v94	Download File View File

Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS

Leitner, A., Joachimiak, L.A., Bracher, A., Walzthoeni, T., Chen, B., Monkemeyer, L., Pechmann, S., Holmes, S., Cong, Y., Ma, B., Ludtke, S., Chiu, W., Hartl, F.U., Aebersold, R., Frydman, J.

(2012) Structure 20: 814-825

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8
Unique Ligands	ADP, BEF, MG

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5AJ3 \| pdb_00005aj3	Download File View File

Structure of the small subunit of the mammalian mitoribosome

Greber, B.J., Bieri, P., Leibundgut, M., Leitner, A., Aebersold, R., Boehringer, D., Ban, N.

(2015) Science 348: 303-308

Released	2015-04-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 33 Unique nucleic acid chains: 3
Unique Ligands	GDP, MG, ZN

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5AJ4 \| pdb_00005aj4	Download File View File

Structure of the 55S mammalian mitoribosome.

Greber, B.J., Bieri, P., Leibundgut, M., Leitner, A., Aebersold, R., Boehringer, D., Ban, N.

(2015) Science 348: 303-308

Released	2015-04-22
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 83 Unique nucleic acid chains: 5
Unique Ligands	GDP, MG, ZN

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5APN \| pdb_00005apn	Download File View File

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Greber, B.J., Gerhardy, S., Leitner, A., Leibundgut, M., Salem, M., Boehringer, D., Leulliot, N., Aebersold, R., Panse, V.G., Ban, V.

(2015) Cell 164: 91

Released	2015-12-16
Method	ELECTRON MICROSCOPY 3.91 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 44 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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5APO \| pdb_00005apo	Download File View File

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Greber, B.J., Gerhardy, S., Leitner, A., Leibundgut, M., Salem, M., Boehringer, D., Leulliot, N., Aebersold, R., Panse, V.G., Ban, N.

(2016) Cell 164: 91-102

Released	2015-12-16
Method	ELECTRON MICROSCOPY 3.41 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 44 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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5LN3 \| pdb_00005ln3	Download File View File

The human 26S Proteasome at 6.8 Ang.

Schweitzer, A., Beck, F., Sakata, E., Unverdorben, P.

(2017) Mol Cell Proteomics 16: 840-854

Released	2017-03-22
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 32

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5NIN \| pdb_00005nin	Download File View File

Crystal Structure of AKAP79 calmodulin binding domain peptide in complex with Ca2+/Calmodulin

Gold, M.G., Patel, N.

(2017) Nat Commun 8: 1681-1681

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	A-kinase anchor protein 5 (protein) Calmodulin (protein)
Unique Ligands	CA, SO4