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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Antonyuk, S.V."

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Search Summary

This query matches 267 Structures.

Refinements

Structure Determination Methodology

experimental (267)

Scientific Name of Source Organism

	Homo sapiens (55)
	Achromobacter cycloclastes (44)
	Achromobacter xylosoxidans (44)
	Bradyrhizobium sp. ORS 375 (27)
	Bradyrhizobium sp. (15)
	Bos taurus (13)
	Bradyrhizobium diazoefficiens USDA 110 (12)
	Ralstonia pickettii (9)
	Saccharomyces cerevisiae (5)
	Ralstonia pickettii 12J (4)

More...

Taxonomy

	Bacteria (182)
	Eukaryota (78)
	Archaea (4)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (258)
	ELECTRON MICROSCOPY (8)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

Protein (267)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (102)
	1.5 - 2.0 (89)
	2.0 - 2.5 (22)
	2.5 - 3.0 (20)
	3.0 - 3.5 (12)
	3.5 - 4.0 (7)
	4.0 - 4.5 (5)
	> 4.5 (1)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (39)
	2010 - 2014 (52)
	2015 - 2019 (84)
	2020 - 2024 (82)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (187)
	Translocases (13)
	Transferases (19)
	Hydrolases (5)
	Lyases (4)
	Ligases (5)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (13)
	OPM (6)
	mpstruc (4)

Symmetry Type

	Cyclic (211)
	Asymmetric (31)
	Dihedral (25)
	Octahedral (1)

SCOP Classification

	All beta proteins (106)
	All alpha proteins (35)
	Alpha and beta proteins (a+b) (22)
	Alpha and beta proteins (a/b) (9)
	Artifacts (11)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 267 Structures

Page 1 of 11

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1JKU \| pdb_00001jku	Download File View File

Crystal Structure of Manganese Catalase from Lactobacillus plantarum

Barynin, V.V., Whittaker, M.M., Antonyuk, S.V., Lamzin, V.S., Harrison, P.M., Artymiuk, P.J., Whittaker, J.W.

(2001) Structure 9: 725-738

Released	2002-07-13
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	pseudocatalase (protein)
Unique Ligands	CA, MN3, OH

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1JKV \| pdb_00001jkv	Download File View File

Crystal Structure of Manganese Catalase from Lactobacillus plantarum complexed with azide

Barynin, V.V., Whittaker, M.M., Antonyuk, S.V., Lamzin, V.S., Harrison, P.M., Artymiuk, P.J., Whittaker, J.W.

(2001) Structure 9: 725-738

Released	2002-07-13
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	pseudocatalase (protein)
Unique Ligands	AZI, CA, EDO, MN3, OH

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1O9I \| pdb_00001o9i	Download File View File

Crystal structure of the Y42F mutant of manganese catalase from Lactobacillus plantarum at 1.33A resolution

Barynin, V.V., Whittaker, M.M., Whittaker, J.W.

(2003) Eur J Biochem 270: 1102

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Lactiplantibacillus plantarum
Macromolecule	Manganese catalase (protein)
Unique Ligands	CA, MES, MN3, NA, O

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1OBD \| pdb_00001obd	Download File View File

SAICAR-synthase complexed with ATP

Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Urusova, D.V., Melik-Adamyan, W.R., Lamzin, V.S., Wilson, K.

(2001) Кристаллография 46: 620

Released	2003-03-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHORIBOSYLAMIDOIMIDAZOLE- SUCCINOCARBOXAMIDE SYNTHASE (protein)
Unique Ligands	AMP, ATP, MG, SO4

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1OBF \| pdb_00001obf	Download File View File

The crystal structure of Glyceraldehyde 3-phosphate Dehydrogenase from Alcaligenes xylosoxidans at 1.7A resolution.

Antonyuk, S.V., Eady, R.R., Strange, R.W., Hasnain, S.S.

(2003) Acta Crystallogr D Biol Crystallogr 59: 835

Released	2003-06-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (protein)
Unique Ligands	K, PG4, SO4

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1OBG \| pdb_00001obg	Download File View File

SAICAR-synthase complexed with ATP

Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Urusova, D.V., Melik-Adamyan, W.R., Lamzin, V.S., Wilson, K.

(2001) Кристаллография 46: 620

Released	2003-03-06
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHORIBOSYLAMIDOIMIDAZOLE- SUCCINOCARBOXAMIDE SYNTHASE (protein)
Unique Ligands	AMP, MG, SO4

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1UXL \| pdb_00001uxl	Download File View File

I113T mutant of human SOD1

Hough, M.A., Grossmann, J.G., Antonyuk, S.V., Strange, R.W., Doucette, P.A., Rodriguez, J.A., Whitson, L.J., Hart, P.J., Hayward, L.J., Valentine, J.S., Hasnain, S.S.

(2004) Proc Natl Acad Sci U S A 101: 5976

Released	2004-03-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	CU, SO4, ZN

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1UXM \| pdb_00001uxm	Download File View File

A4V mutant of human SOD1

Hough, M.A., Grossmann, J.G., Antonyuk, S.V., Strange, R.W., Doucette, P.A., Rodriguez, J.A., Whitson, L.J., Hart, P.J., Hayward, L.J., Valentine, J.S., Hasnain, S.S.

(2004) Proc Natl Acad Sci U S A 101: 5976

Released	2004-03-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	CU, ZN

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1WA0 \| pdb_00001wa0	Download File View File

Crystal Structure Of W138H Mutant Of Alcaligenes Xylosoxidans Nitrite Reductase

Barrett, M.L., Harris, R.L., Antonyuk, S.V., Strange, R.W., Hough, M.A., Eady, R.R., Sawers, G., Hasnain, S.S.

(2004) Biochemistry 43: 16311

Released	2005-01-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, MES, PG4, SO4, ZN

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1WA1 \| pdb_00001wa1	Download File View File

Crystal Structure Of H313Q Mutant Of Alcaligenes Xylosoxidans Nitrite Reductase

Barrett, M.L., Harris, R.L., Antonyuk, S.V., Strange, R.W., Hough, M.A., Eady, R.R., Sawers, G., Hasnain, S.S.

(2004) Biochemistry 43: 16311

Released	2005-01-04
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, MES, SO4, ZN

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1WA2 \| pdb_00001wa2	Download File View File

Crystal Structure Of H313Q Mutant Of Alcaligenes Xylosoxidans Nitrite Reductase with nitrite bound

Barrett, M.L., Harris, R.L., Antonyuk, S.V., Strange, R.W., Hough, M.A., Eady, R.R., Sawers, G., Hasnain, S.S.

(2004) Biochemistry 43: 16311

Released	2005-01-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, (protein)
Unique Ligands	CU, MES, NO2, SO4, ZN

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1WAE \| pdb_00001wae	Download File View File

Crystal structure of H129V Mutant of Alcaligenes Xylosoxidans Nitrite Reductase

Ellis, M.J., Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2004) Inorg Chem 43: 7591

Released	2004-10-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, ZN

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2BW4 \| pdb_00002bw4	Download File View File

Atomic Resolution Structure of Resting State of the Achromobacter cycloclastes Cu Nitrite Reductase

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, MLI, SO4

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2BW5 \| pdb_00002bw5	Download File View File

Atomic Resolution Structure of NO-bound Achromobacter cycloclastes Cu Nitrite Reductase

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, HOA, MLI, PO4

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2BWD \| pdb_00002bwd	Download File View File

Atomic Resolution Structure of Achromobacter cycloclastes Cu Nitrite Reductase with Endogenously bound Nitrite and NO

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, HOA, MLI, NO2

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2BWI \| pdb_00002bwi	Download File View File

Atomic Resolution Structure of Nitrite -soaked Achromobacter cycloclastes Cu Nitrite Reductase

Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R., Hasnain, S.S.

(2005) Proc Natl Acad Sci U S A 102: 12041

Released	2005-08-17
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Achromobacter cycloclastes
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, MLI, NO2

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2C9S \| pdb_00002c9s	Download File View File

1.24 Angstroms resolution structure of Zn-Zn Human Superoxide dismutase

Strange, R.W., Antonyuk, S.V., Hough, M.A., Doucette, P.A., Valentine S, J.S., Hasnain, S.

(2006) J Mol Biology 356: 1152

Released	2005-12-15
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	ACT, SO4, ZN

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2C9U \| pdb_00002c9u	Download File View File

1.24 Angstroms resolution structure of as-isolated Cu-Zn Human Superoxide dismutase

Strange, R.W., Antonyuk, S.V., Hough, M.A., Doucette, P.A., Valentine S, J.S., Hasnain, S.

(2006) J Mol Biology 356: 1152

Released	2005-12-16
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	ACT, CU, SO4, ZN

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2C9V \| pdb_00002c9v	Download File View File

Atomic resolution structure of Cu-Zn Human Superoxide dismutase

Strange, R.W., Antonyuk, S.V., Hough, M.A., Doucette, P.A., Valentine, J.S., Hasnain, S.S.

(2006) J Mol Biology 356: 1152

Released	2005-12-20
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Homo sapiens
Macromolecule	SUPEROXIDE DISMUTASE [CU-ZN] (protein)
Unique Ligands	CU, NA, SO4, ZN

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2CNQ \| pdb_00002cnq	Download File View File

Atomic resolution structure of SAICAR-synthase from Saccharomyces cerevisiae complexed with ADP, AICAR, succinate

Urusova, D.V., Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Barynin, V.V., Popov, A.N., Lamzin, V.S., Melik-Adamyan, W.R.

To be published

Released	2006-06-08
Method	X-RAY DIFFRACTION 1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE (protein)
Unique Ligands	ADP, AMP, AMZ, MG, SIN, SO4

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2CNU \| pdb_00002cnu	Download File View File

Atomic resolution structure of SAICAR-synthase from Saccharomyces cerevisiae complexed with aspartic acid

Urusova, D.V., Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Barynin, V.V., Popov, A.N., Lamzin, V.S., Melik-Adamyan, W.R.

To be published

Released	2006-06-07
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE (protein)
Unique Ligands	ASP, SO4

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2CNV \| pdb_00002cnv	Download File View File

SAICAR-synthase from Saccharomyces cerevisiae complexed SAICAR

Urusova, D.V., Antonyuk, S.V., Grebenko, A.I., Levdikov, V.M., Barynin, V.V., Popov, A.N., Lamzin, V.S., Melik-Adamyan, V.R.

(2006) Crystallogr Rep 51: 824

Released	2006-06-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE (protein)
Unique Ligands	ASP, SO4, SSS

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2IWF \| pdb_00002iwf	Download File View File

Resting form of pink nitrous oxide reductase from Achromobacter Cycloclastes

Paraskevopoulos, K., Antonyuk, S.V., Sawers, R.G., Eady, R.R., Hasnain, S.S.

(2006) J Mol Biology 362: 55

Released	2006-08-16
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Achromobacter cycloclastes
Macromolecule	NITROUS-OXIDE REDUCTASE (protein)
Unique Ligands	CA, CL, CU, CUZ, NA

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2IWK \| pdb_00002iwk	Download File View File

Inhibitor-bound form of nitrous oxide reductase from Achromobacter Cycloclastes at 1.7 Angstrom resolution

Paraskevopoulos, K., Antonyuk, S.V., Sawers, R.G., Eady, R.R., Hasnain, S.S.

(2006) J Mol Biology 362: 55

Released	2006-08-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Achromobacter cycloclastes
Macromolecule	NITROUS OXIDE REDUCTASE (protein)
Unique Ligands	CA, CL, CU, CUZ, IOD, NA

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2JLP \| pdb_00002jlp	Download File View File

Crystal structure of human extracellular copper-zinc superoxide dismutase.

Antonyuk, S.V., Strange, R.W., Marklund, S.L., Hasnain, S.S.

(2009) J Mol Biology 388: 310

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	EXTRACELLULAR SUPEROXIDE DISMUTASE (CU-ZN) (protein)
Unique Ligands	CU, SCN, ZN

1 to 25 of 267 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1JKU | pdb_00001jku

1JKV | pdb_00001jkv

1O9I | pdb_00001o9i

1OBD | pdb_00001obd

1OBF | pdb_00001obf

1OBG | pdb_00001obg

1UXL | pdb_00001uxl

1UXM | pdb_00001uxm

1WA0 | pdb_00001wa0

1WA1 | pdb_00001wa1

1WA2 | pdb_00001wa2

1WAE | pdb_00001wae

2BW4 | pdb_00002bw4

2BW5 | pdb_00002bw5

2BWD | pdb_00002bwd

2BWI | pdb_00002bwi

2C9S | pdb_00002c9s

2C9U | pdb_00002c9u

2C9V | pdb_00002c9v

2CNQ | pdb_00002cnq

2CNU | pdb_00002cnu

2CNV | pdb_00002cnv

2IWF | pdb_00002iwf

2IWK | pdb_00002iwk

2JLP | pdb_00002jlp