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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ariza, A."

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Search Summary

This query matches 82 Structures.

Refinements

Structure Determination Methodology

experimental (82)

Scientific Name of Source Organism

	Homo sapiens (13)
	Latimeria chalumnae (8)
	Thermus sp. 2.9 (6)
	Paenibacillus polymyxa (4)
	Streptococcus pyogenes str. Manfredo (4)
	Escherichia coli (3)
	Hafnia alvei (3)
	Human respiratory syncytial virus A2 (3)
	Methanobrevibacter oralis (3)
	Shouchella clausii (3)

More...

Taxonomy

	Eukaryota (39)
	Bacteria (33)
	Riboviria (7)
	Archaea (4)

Experimental Method

X-RAY DIFFRACTION (82)

Polymer Entity Type

	Protein (82)
	DNA (5)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (36)
	2.0 - 2.5 (22)
	2.5 - 3.0 (12)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (18)
	2015 - 2019 (32)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (50)
	Transferases (11)
	Lyases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (68)
	Cyclic (15)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (10)
	Alpha and beta proteins (a+b) (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 82 Structures

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2BKE \| pdb_00002bke	Download File View File

Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA

Ariza, A., Richard, D.L., White, M.F., Bond, C.S.

(2005) Nucleic Acids Res 33: 1465

Released	2005-03-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA REPAIR AND RECOMBINATION PROTEIN RADA (protein)
Unique Ligands	CL

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2C21 \| pdb_00002c21	Download File View File

Specificity of the Trypanothione-dependednt Leishmania major Glyoxalase I: Structure and biochemical comparison with the human enzyme

Ariza, A., Vickers, T.J., Greig, N., Armour, K.A., Eggleston, I.M., Fairlamb, A.H., Bond, C.S.

(2006) Mol Microbiol 59: 1239

Released	2006-02-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Leishmania major
Macromolecule	TRYPANOTHIONE-DEPENDENT GLYOXALASE I (protein)
Unique Ligands	MPD, MRD, NA, NI

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2WBA \| pdb_00002wba	Download File View File

Properties of Trypanothione Reductase From T. brucei

Jones, D., Ariza, A., Chow, W.H.A., Oza, S.L., Fairlamb, A.H.

(2010) Mol Biochem Parasitol 169: 12

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRYPANOTHIONE REDUCTASE (protein)
Unique Ligands	FAD, GOL, NDP, PG4, SO4

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2WV7 \| pdb_00002wv7	Download File View File

Intracellular subtilisin precursor from B. clausii

Vevodova, J., Gamble, M., Ariza, A., Dodson, E., Jones, D.D., Wilson, K.S.

(2010) Structure 18: 744

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Shouchella clausii
Macromolecule	INTRACELLULAR SUBTILISIN PROTEASE (protein)
Unique Ligands	NA

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2WWT \| pdb_00002wwt	Download File View File

Intracellular subtilisin precursor from B. clausii

Vevodova, J., Gamble, M., Ariza, A., Dodson, E., Jones, D.D., Wilson, K.S.

(2010) Structure 18: 744

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Shouchella clausii
Macromolecule	INTRACELLULAR SUBTILISIN PROTEASE (protein)
Unique Ligands	NA

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2X8J \| pdb_00002x8j	Download File View File

Intracellular subtilisin precursor from B. clausii

Vedodova, J., Gamble, M., Ariza, A., Dodson, E., Jones, D.D., Wilson, K.S.

(2010) Structure 18: 744-755

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Shouchella clausii
Macromolecule	INTRACELLULAR SUBTILISIN PROTEASE (protein)
Unique Ligands	1PE, GOL, NA

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2YIH \| pdb_00002yih	Download File View File

Structure of a Paenibacillus polymyxa Xyloglucanase from GH family 44 with Xyloglucan

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Paenibacillus polymyxa
Macromolecule	CEL44C (protein)
Unique Ligands	CA, CL, EDO, SO4
Unique branched monosaccharides	BGC, XYS

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2YJQ \| pdb_00002yjq	Download File View File

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Paenibacillus polymyxa
Macromolecule	CEL44C (protein)
Unique Ligands	CA, CL, EDO, OXZ, PGE, SO4
Unique branched monosaccharides	BGC

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2YKK \| pdb_00002ykk	Download File View File

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-22
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Paenibacillus polymyxa
Macromolecule	CEL44C (protein)
Unique Ligands	BTB, CA, CL, PG4, SO4

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3ZHC \| pdb_00003zhc	Download File View File

Structure of the phytase from Citrobacter braakii at 2.3 angstrom resolution.

Wilson, K.S., Ariza, A., Sanchez-Romero, I., Skjot, M., Vind, J., DeMaria, L., Skov, L.K., Sanchez-Ruiz, J.M.

(2013) PLoS One 8: 70013

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Citrobacter braakii
Macromolecule	PHYTASE (protein)
Unique Ligands	CL, FMT

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3ZL9 \| pdb_00003zl9	Download File View File

Crystal structure of the nucleocapsid protein from Schmallenberg virus

Ariza, A., Tanner, S.J., Walter, C.T., Dent, K.C., Shepherd, D.A., Wu, W., Matthews, S.V., Hiscox, J.A., Green, T.J., Luo, M., Elliot, R.M., Ashcroft, A.E., Stonehouse, N.J., Ranson, N.A., Barr, J.N., Edwards, T.A.

(2013) Nucleic Acids Res 41: 5912

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Schmallenberg virus
Macromolecule	NUCLEOCAPSID PROTEIN (protein)

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3ZLA \| pdb_00003zla	Download File View File

Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNA

(2013) Nucleic Acids Res 41: 5912

Released	2013-05-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bunyamwera virus Escherichia coli BL21(DE3)
Macromolecule	NUCLEOPROTEIN (protein) RNA (nucleic acid)

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3ZQ9 \| pdb_00003zq9	Download File View File

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Ariza, A., Eklof, J.M., Spadiut, O., Offen, W.A., Roberts, S.M., Besenmatter, W., Friis, E.P., Skjot, M., Wilson, K.S., Brumer, H., Davies, G.

(2011) J Biological Chem 286: 33890

Released	2011-06-22
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Paenibacillus polymyxa
Macromolecule	XYLOGLUCANASE (protein)
Unique Ligands	BGC, CA, CL, EDO, NOY, SO4

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4AKL \| pdb_00004akl	Download File View File

Structure of the Crimean-Congo Haemorrhagic Fever Virus Nucleocapsid Protein

Carter, S.D., Walter, C.T., Surtees, R., Bergeron, E., Ariza, A., Albarino, C.G., Nichol, S.T., Hiscox, J.A., Edwards, T.A., Barr, J.N.

(2012) J Virol 86: 10914

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Orthonairovirus haemorrhagiae
Macromolecule	NUCLEOCAPSID (protein)
Unique Ligands	PGE

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4ARO \| pdb_00004aro	Download File View File

Hafnia Alvei phytase in complex with myo-inositol hexakis sulphate

Moroz, O.V., Blagova, E.B., Ariza, A., Turkenburg, J.P., Vevodova, J., Roberts, S., Vind, J., Sjoholm, C., Lassen, S.F., De Maria, L., Glitsoe, V., Skov, L.K., Wilson, K.S.

(2013) PLoS One 8: 65062

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Hafnia alvei
Macromolecule	HISTIDINE ACID PHOSPHATASE (protein)
Unique Ligands	IHS, K, PEG

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4ARS \| pdb_00004ars	Download File View File

Hafnia Alvei phytase apo form

Ariza, A., Moroz, O.V., Blagova, E.B., Turkenburg, J.P., Vevodova, J., Roberts, S., Vind, J., Sjoholm, C., Lassen, S.F., De Maria, L., Glitsoe, V., Skov, L.K., Wilson, K.S.

(2013) PLoS One 8: 65062

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Hafnia alvei
Macromolecule	HISTIDINE ACID PHOSPHATASE (protein)
Unique Ligands	ACT, GOL

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4ARU \| pdb_00004aru	Download File View File

Hafnia Alvei phytase in complex with tartrate

Ariza, A., Moroz, O.V., Blagova, E.B., Turkenburg, J.P., Vevodova, J., Roberts, S., Vind, J., Sjoholm, C., Lassen, S.F., De Maria, L., Glitsoe, V., Skov, L.K., Wilson, K.S.

(2013) PLoS One 8: 65062

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Hafnia alvei
Macromolecule	HISTIDINE ACID PHOSPHATASE (protein)
Unique Ligands	CL, K, NA, TLA

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4ARV \| pdb_00004arv	Download File View File

Yersinia kristensenii phytase apo form

Ariza, A., Moroz, O.V., Blagova, E.B., Turkenburg, J.P., Vevodova, J., Roberts, S., Vind, J., Sjoholm, C., Lassen, S.F., De Maria, L., Glitsoe, V., Skov, L.K., Wilson, K.S.

(2013) PLoS One 8: 65062

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Yersinia kristensenii
Macromolecule	PHYTASE (protein)
Unique Ligands	EDO, P15, PO4, TOE

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4C3B \| pdb_00004c3b	Download File View File

HRSV M2-1, P21 crystal form

Tanner, S.J., Ariza, A., Richard, C.A., Wu, W., Trincao, J., Hiscox, J.A., Carroll, M.W., Silman, N.J., Eleouet, J.F., Edwards, T.A., Barr, J.N.

(2014) Proc Natl Acad Sci U S A 111: 1580

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Human respiratory syncytial virus A2
Macromolecule	MATRIX PROTEIN 2-1 (protein)
Unique Ligands	ZN

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4C3D \| pdb_00004c3d	Download File View File

HRSV M2-1, P422 crystal form

Tanner, S.J., Ariza, A., Richard, C.A., Wu, W., Trincao, J., Hiscox, J.A., Carroll, M.W., Silman, N.J., Eleouet, J.F., Edwards, T.A., Barr, J.N.

(2014) Proc Natl Acad Sci U S A 111: 1580

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Human respiratory syncytial virus A2
Macromolecule	MATRIX M2-1 (protein)
Unique Ligands	CD

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4C3E \| pdb_00004c3e	Download File View File

HRSV M2-1 mutant S58D S61D, P21 crystal

Tanner, S.J., Ariza, A., Richard, C.A., Wu, W., Trincao, J., Hiscox, J.A., Carroll, M.W., Silman, N.J., Eleouet, J.F., Edwards, T.A., Barr, J.N.

(2014) Proc Natl Acad Sci U S A 111: 1580

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human respiratory syncytial virus A2
Macromolecule	MATRIX M2-1 (protein)
Unique Ligands	ZN

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5A35 \| pdb_00005a35	Download File View File

Crystal structure of Glycine Cleavage Protein H-Like (GcvH-L) from Streptococcus pyogenes

Rack, J.G.M., Morra, R., Barkauskaite, E., Kraehenbuehl, R., Ariza, A., Qu, Y., Ortmayer, M., Leidecker, O., Cameron, D.R., Matic, I., Peleg, A.Y., Leys, D., Traven, A., Ahel, I.

(2015) Mol Cell 59: 309

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus pyogenes str. Manfredo
Macromolecule	GLYCINE CLEAVAGE SYSTEM H PROTEIN (protein)
Unique Ligands	1PE

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5A3A \| pdb_00005a3a	Download File View File

Crystal structure of the ADP-ribosylating sirtuin (SirTM) from Streptococcus pyogenes (Apo form)

Rack, J.G.M., Morra, R., Barkauskaite, E., Kraehenbuehl, R., Ariza, A., Qu, Y., Ortmayer, M., Leidecker, O., Cameron, D.R., Matic, I., Peleg, A.Y., Leys, D., Traven, A., Ahel, I.

(2015) Mol Cell 59: 309

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Streptococcus pyogenes str. Manfredo
Macromolecule	SIR2 FAMILY PROTEIN (protein)
Unique Ligands	EDO, GLY, ZN

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5A3B \| pdb_00005a3b	Download File View File

Crystal structure of the ADP-ribosylating sirtuin (SirTM) from Streptococcus pyogenes in complex with ADP-ribose

Rack, J.G.M., Morra, R., Barkauskaite, E., Kraehenbuehl, R., Ariza, A., Qu, Y., Ortmayer, M., Leidecker, O., Cameron, D.R., Matic, I., Peleg, A.Y., Leys, D., Traven, A., Ahel, I.

(2015) Mol Cell 59: 309

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus pyogenes str. Manfredo
Macromolecule	SIR2 FAMILY PROTEIN (protein)
Unique Ligands	ALA, APR, EDO, GLY, ZN

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5A3C \| pdb_00005a3c	Download File View File

Crystal structure of the ADP-ribosylating sirtuin (SirTM) from Streptococcus pyogenes in complex with NAD

Rack, J.G.M., Morra, R., Barkauskaite, E., Kraehenbuehl, R., Ariza, A., Qu, Y., Ortmayer, M., Leidecker, O., Cameron, D.R., Matic, I., Peleg, A.Y., Leys, D., Traven, A., Ahel, I.

(2015) Mol Cell 59: 309

Released	2015-07-29
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Streptococcus pyogenes str. Manfredo
Macromolecule	SIR2 FAMILY PROTEIN (protein)
Unique Ligands	EDO, GLY, NAD, ZN

1 to 25 of 82 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2BKE | pdb_00002bke

2C21 | pdb_00002c21

2WBA | pdb_00002wba

2WV7 | pdb_00002wv7

2WWT | pdb_00002wwt

2X8J | pdb_00002x8j

2YIH | pdb_00002yih

2YJQ | pdb_00002yjq

2YKK | pdb_00002ykk

3ZHC | pdb_00003zhc

3ZL9 | pdb_00003zl9

3ZLA | pdb_00003zla

3ZQ9 | pdb_00003zq9

4AKL | pdb_00004akl

4ARO | pdb_00004aro

4ARS | pdb_00004ars

4ARU | pdb_00004aru

4ARV | pdb_00004arv

4C3B | pdb_00004c3b

4C3D | pdb_00004c3d

4C3E | pdb_00004c3e

5A35 | pdb_00005a35

5A3A | pdb_00005a3a

5A3B | pdb_00005a3b

5A3C | pdb_00005a3c