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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Arndt, J.W."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (14)
	Clostridium botulinum (6)
	Mus musculus (4)
	Pyrococcus furiosus (3)
	Rattus norvegicus (2)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (21)
	Bacteria (6)
	Archaea (3)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

	Protein (27)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (7)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (9)
	2010 - 2014 (5)
	2015 - 2019 (4)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (8)
	Lyases (2)
	Transferases (4)

Symmetry Type

	Asymmetric (22)
	Cyclic (7)
	Dihedral (1)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a+b) (10)
	All alpha proteins (2)
	Artifacts (5)
	Alpha and beta proteins (a/b) (1)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 27 Structures

Page 1 of 2

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1HUO \| pdb_00001huo	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPC)-3' (nucleic acid)
Unique Ligands	CR, TTE

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1HUZ \| pdb_00001huz	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPCP*T)-3' (nucleic acid)
Unique Ligands	CR, MDN

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1K9X \| pdb_00001k9x	Download File View File

Structure of Pyrococcus furiosus carboxypeptidase Apo-Yb

Arndt, J.W., Hao, B., Ramakrishnan, V., Cheng, T., Chan, S.I., Chan, M.K.

(2002) Structure 10: 215-224

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus
Macromolecule	M32 carboxypeptidase (protein)

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1KA2 \| pdb_00001ka2	Download File View File

Structure of Pyrococcus furiosus Carboxypeptidase Apo-Mg

Arndt, J.W., Hao, B., Ramakrishnan, V., Cheng, T., Chan, S.I., Chan, M.K.

(2002) Structure 10: 215-224

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	M32 carboxypeptidase (protein)
Unique Ligands	MG

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1KA4 \| pdb_00001ka4	Download File View File

Structure of Pyrococcus furiosus carboxypeptidase Nat-Pb

Arndt, J.W., Hao, B., Ramakrishnan, V., Cheng, T., Chan, S.I., Chan, M.K.

(2002) Structure 10: 215-224

Released	2002-11-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pyrococcus furiosus
Macromolecule	M32 carboxypeptidase (protein)
Unique Ligands	PB

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1VKH \| pdb_00001vkh	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE SERINE HYDROLASE (YDR428C) FROM SACCHAROMYCES CEREVISIAE AT 1.85 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2005) Proteins 58: 755-758

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	putative serine hydrolase (protein)
Unique Ligands	CL, GOL

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1YBI \| pdb_00001ybi	Download File View File

Crystal structure of HA33A, a neurotoxin-associated protein from Clostridium botulinum type A

Arndt, J.W., Gu, J., Jaroszewski, L., Schwarzenbacher, R., Hanson, M., Lebeda, F.J., Stevens, R.C.

(2005) J Mol Biology 346: 1083-1093

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Clostridium botulinum
Macromolecule	non-toxin haemagglutinin HA34 (protein)

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1ZB7 \| pdb_00001zb7	Download File View File

Crystal Structure of Botulinum Neurotoxin Type G Light Chain

Arndt, J.W., Yu, W., Bi, F., Stevens, R.C.

(2005) Biochemistry 44: 9574-9580

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Clostridium botulinum
Macromolecule	neurotoxin (protein)
Unique Ligands	FLC, ZN

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2FPQ \| pdb_00002fpq	Download File View File

Crystal Structure of Botulinum Neurotoxin Type D Light Chain

Arndt, J.W., Chai, Q., Christian, T., Stevens, R.C.

(2006) Biochemistry 45: 3255-3262

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Clostridium botulinum
Macromolecule	BOTULINUM NEUROTOXIN D LIGHT CHAIN (protein)
Unique Ligands	K, ZN

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2NP0 \| pdb_00002np0	Download File View File

Crystal structure of the Botulinum neurotoxin type B complexed with synaptotagamin-II ectodomain

Chai, Q., Arndt, J.W., Stevens, R.C.

(2006) Nature 444: 1096-1100

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Clostridium botulinum Mus musculus
Macromolecule	Botulinum neurotoxin type B (protein) Synaptotagmin-2 (protein)
Unique Ligands	CA, CL, ZN

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2NYY \| pdb_00002nyy	Download File View File

Crystal structure of botulinum neurotoxin type A complexed with monoclonal antibody CR1

Stevens, R.C., Arndt, J.W.

(2007) Nat Biotechnol 25: 107-116

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Clostridium botulinum Homo sapiens
Macromolecule	Botulinum neurotoxin type A (protein) CR1 monoclonal antibody (protein)
Unique Ligands	CA, ZN

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2NZ9 \| pdb_00002nz9	Download File View File

Crystal structure of botulinum neurotoxin type A complexed with monoclonal antibody AR2

Stevens, R.C., Arndt, J.W.

(2007) Nat Biotechnol 25: 107-116

Released	2006-12-26
Method	X-RAY DIFFRACTION 3.79 Å
Organisms	Clostridium botulinum Homo sapiens
Macromolecule	AR2 monoclonal antibody (protein) Botulinum neurotoxin type A (protein)
Unique Ligands	CA, ZN

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3HC0 \| pdb_00003hc0	Download File View File

BHA10 IgG1 wild-type Fab - antibody directed at human LTBR

Arndt, J.W., Jordan, J.L., Lugovskoy, A., Wang, D.

(2009) Proteins 77: 832-841

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)
Unique Ligands	ACT

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3HC3 \| pdb_00003hc3	Download File View File

BHA10 IgG1 Fab double mutant variant - antibody directed at human LTBR

Arndt, J.W., Jordan, J.L., Lugovskoy, A., Wang, D.

(2009) Proteins 77: 832-841

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)
Unique Ligands	ACT, ZN

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3HC4 \| pdb_00003hc4	Download File View File

BHA10 IgG1 Fab quadruple mutant variant - antibody directed at human LTBR

Arndt, J.W., Jordan, J.L., Lugovskoy, A., Wang, D.

(2009) Proteins 77: 832-841

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)
Unique Ligands	ACT, ZN

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3NMQ \| pdb_00003nmq	Download File View File

Hsp90b N-terminal domain in complex with EC44, a pyrrolo-pyrimidine methoxypyridine inhibitor

Arndt, J.W., Yun, T.J., Harning, E.K., Giza, K., Rabah, D., Li, P., Luchetti, D., Shi, J., Manning, A., Kehry, M.R.

(2011) J Immunol 186: 563-575

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-beta (protein)
Unique Ligands	7PP

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3PWY \| pdb_00003pwy	Download File View File

Crystal structure of an extender (SPD28345)-modified human PDK1 complex 2

Elling, R.A., Penny, D.M., Simmons, R.L., Erlanson, D.A., Romanowski, M.J.

(2011) Bioorg Med Chem Lett 21: 3078-3083

Released	2011-04-20
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	SYP

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3QC4 \| pdb_00003qc4	Download File View File

PDK1 in complex with DFG-OUT inhibitor xxx

Arndt, J.W.

(2011) Bioorg Med Chem Lett 21: 3078-3083

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	3-phosphoinositide-dependent protein kinase 1 (protein)
Unique Ligands	MP7

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4KY1 \| pdb_00004ky1	Download File View File

humanized HP1/2 Fab

Arndt, J.W., Hanf, K.J.M., Lugovskoy, A., Chen, L.L., Jarpe, M., Boriack-Sjodin, A., Li, Y., van Vlijmen, H., Pepinsky, B., Taylor, F., Silvian, L., Taveras, A.

(2014) Methods 65: 68-76

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN (protein) IMMUNOGLOBULIN IGG1 FAB, LIGHT CHAIN (protein)

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4OQT \| pdb_00004oqt	Download File View File

LINGO-1/Li81 Fab complex

Pepinsky, R.B., Arndt, J.W., Quan, C., Gao, Y., Quintero-Monzon, O., Lee, X., Mi, S.

(2014) J Pharmacol Exp Ther 350: 110-123

Released	2014-05-14
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Homo sapiens
Macromolecule	Heavy Chain of Li81 Fab, VH3-23 (protein) Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 (protein) Light Chain of Li81 Fab, kappa 3 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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6CNR \| pdb_00006cnr	Download File View File

aducanumab apo Fab

Arndt, J.W.

(2018) Sci Rep 8: 6412-6412

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	Aducanumab heavy chain (protein) Aducanumab light chain (protein)
Unique Ligands	SO4

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6CO3 \| pdb_00006co3	Download File View File

aducanumab abeta complex

Arndt, J.W.

(2018) Sci Rep 8: 6412-6412

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.384 Å
Organisms	Homo sapiens
Macromolecule	ALA-GLU-PHE-ARG-HIS-ASP (protein) Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	SO4

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6CT7 \| pdb_00006ct7	Download File View File

Fab of anti-a-synuclein antibody BIIB054 in complex with acetylated a-synuclein peptide (1-10)

Arndt, J.W.

(2018) Neurobiol Dis 124: 276-288

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.903 Å
Organisms	Homo sapiens
Macromolecule	ACE-MET-ASP-VAL-PHE-MET-LYS-GLY-LEU-SER-LYS (protein) BIIB054 Fab heavy chain (protein) BIIB054 Fab light chain (protein)
Unique Ligands	IPA