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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Banerjee, S."

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Search Summary

This query matches 284 Structures.

Refinements

Structure Determination Methodology

experimental (284)

Scientific Name of Source Organism

	Homo sapiens (82)
	Panus similis (32)
	Mus musculus (21)
	Bos taurus (15)
	synthetic construct (14)
	Gallus gallus (12)
	Saccharolobus solfataricus P2 (12)
	Sus scrofa (11)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (10)
	Rattus norvegicus (8)

More...

Taxonomy

	Eukaryota (191)
	Bacteria (50)
	Archaea (29)
	other sequences (14)
	Varidnaviria (10)
	Duplodnaviria (6)
	Riboviria (5)

Experimental Method

	X-RAY DIFFRACTION (258)
	ELECTRON MICROSCOPY (23)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (281)
	DNA (37)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (40)
	1.5 - 2.0 (64)
	2.0 - 2.5 (62)
	2.5 - 3.0 (67)
	3.0 - 3.5 (35)
	3.5 - 4.0 (11)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (4)
	2005 - 2009 (2)
	2010 - 2014 (53)
	2015 - 2019 (113)
	2020 - 2024 (97)
	2025 - 2029 (8)

Enzyme Classification Name

	Oxidoreductases (90)
	Hydrolases (60)
	Transferases (46)
	Lyases (5)
	Ligases (3)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (16)
	MemProtMD (14)
	OPM (12)
	mpstruc (11)

Symmetry Type

	Asymmetric (172)
	Cyclic (77)
	Dihedral (31)
	Helical (4)

SCOP Classification

	Alpha and beta proteins (a/b) (33)
	Alpha and beta proteins (a+b) (33)
	All beta proteins (21)
	Artifacts (27)
	All alpha proteins (13)
	Small proteins (7)
	Multi-domain proteins (alpha and beta) (10)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 284 Structures

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1DDR \| pdb_00001ddr	Download File View File

MOLECULE: DIHYDROFOLATE REDUCTASE (E.C.1.5.1.3) COMPLEXED WITH METHOTREXATE AND UREA

Yennawar, H.P., Farber, G.K.

(1997) Protein Sci 6: 1727-1733

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli B
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	CA, CL, MTX, URE

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1DDS \| pdb_00001dds	Download File View File

MOLECULE: DIHYDROFOLATE REDUCTASE (E.C.1.5.1.3) COMPLEXED WITH METHOTREXATE

Yennawar, H.P., Farber, G.K.

(1997) Protein Sci 6: 1727-1733

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	CA, CL, MTX

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1KGE \| pdb_00001kge	Download File View File

STRUCTURE OF BETA-LACTAMASE ASN 170 MET MUTANT

Chen, C.C.H., Zawadzke, L.E., Herzberg, O.

(1996) Biochemistry 35: 16475-16482

Released	1997-04-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	BETA-LACTAMASE (protein)

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1KGF \| pdb_00001kgf	Download File View File

STRUCTURE OF BETA-LACTAMASE ASN 170 GLN MUTANT

Chen, C.C.H., Zawadzke, L.E., Herzberg, O.

(1996) Biochemistry 35: 16475-16482

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	BETA-LACTAMASE (protein)

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1NQT \| pdb_00001nqt	Download File View File

Crystal structure of bovine Glutamate dehydrogenase-ADP complex

Banerjee, S., Schmidt, T., Fang, J., Stanley, C.A., Smith, T.J.

(2003) Biochemistry 42: 3446-3456

Released	2003-05-06
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1 (protein)
Unique Ligands	ADP

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1NR1 \| pdb_00001nr1	Download File View File

Crystal structure of the R463A mutant of human Glutamate dehydrogenase

Banerjee, S., Schmidt, T., Fang, J., Stanley, C.A., Smith, T.J.

(2003) Biochemistry 42: 3446-3456

Released	2003-05-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Glutamate dehydrogenase 1 (protein)

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1NR7 \| pdb_00001nr7	Download File View File

Crystal structure of apo bovine glutamate dehydrogenase

Banerjee, S., Schmidt, T., Fang, J., Stanley, C.A., Smith, T.J.

(2003) Biochemistry 42: 3446-3456

Released	2003-05-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1 (protein)

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1OME \| pdb_00001ome	Download File View File

CRYSTAL STRUCTURE OF THE OMEGA LOOP DELETION MUTANT (RESIDUES 163-178 DELETED) OF BETA-LACTAMASE FROM STAPHYLOCOCCUS AUREUS PC1

Banerjee, S., Pieper, U., Herzberg, O.

(1998) Biochemistry 37: 3286-3296

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	CL

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1PQ4 \| pdb_00001pq4	Download File View File

Crystal structure of ZnuA

Banerjee, S., Wei, B., Bhattacharyya-Pakrasi, M., Pakrasi, H.B., Smith, T.J.

(2003) J Mol Biology 333: 1061-1069

Released	2003-11-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	periplasmic binding protein component of an ABC type zinc uptake transporter (protein)
Unique Ligands	ZN

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1RBW \| pdb_00001rbw	Download File View File

RIBONUCLEASE A (E.C.3.1.27.5) WITH GUANIDINIUM

Dunbar, J.L.H., Farber, G.K.

(1997) Protein Sci 6: 1727-1733

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	GAI

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1RBX \| pdb_00001rbx	Download File View File

RIBONUCLEASE A (E.C.3.1.27.5) CONTROL

Dunbar, J.L.H., Farber, G.K.

(1997) Protein Sci 6: 1727-1733

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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2B5B \| pdb_00002b5b	Download File View File

A reptilian defensin with anti-bacterial and anti-viral activity

Chattopadhyay, S., Sinha, N.K., Banerjee, S., Roy, D., Chattopadhyay, D., Roy, S.

(2006) Proteins 64: 524-531

Released	2006-06-27
Method	SOLUTION NMR
Organisms	Caretta caretta
Macromolecule	Defensin (protein)

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2KZT \| pdb_00002kzt	Download File View File

Structure of the Tandem MA-3 Region of Pdcd4

Waters, L.C., Strong, S.L., Oka, O., Muskett, F.W., Veverka, V., Banerjee, S., Schmedt, T., Henry, A.J., Klempnauer, K.H., Carr, M.D.

(2011) J Biological Chem 286: 17270-17280

Released	2011-03-16
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	Programmed cell death protein 4 (protein)

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2MDR \| pdb_00002mdr	Download File View File

Solution structure of the third double-stranded RNA-binding domain (dsRBD3) of human adenosine-deaminase ADAR1

Barraud, P., Banerjee, S., Mohamed, W.I., Jantsch, M.F., Allain, F.H.

(2014) Proc Natl Acad Sci U S A 111: E1852-E1861

Released	2014-04-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific adenosine deaminase (protein)

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3F9P \| pdb_00003f9p	Download File View File

Crystal structure of myeloperoxidase from human leukocytes

Carpena, X., Fita, I., Obinger, C.

(2009) J Biological Chem 284: 25929-25937

Released	2009-07-14
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	Myeloperoxidase (protein)
Unique Ligands	ACT, CA, CL, HEM, NAG
Unique branched monosaccharides	BMA, FUC, NAG

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3J7H \| pdb_00003j7h	Download File View File

Structure of beta-galactosidase at 3.2-A resolution obtained by cryo-electron microscopy

Bartesaghi, A., Matthies, D., Banerjee, S., Merk, A., Subramaniam, S.

(2014) Proc Natl Acad Sci U S A 111: 11709-11714

Released	2014-07-30
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	MG

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3JCZ \| pdb_00003jcz	Download File View File

Structure of bovine glutamate dehydrogenase in the unliganded state

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)

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3JD0 \| pdb_00003jd0	Download File View File

Glutamate dehydrogenase in complex with GTP

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.47 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GTP

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3JD1 \| pdb_00003jd1	Download File View File

Glutamate dehydrogenase in complex with NADH, closed conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	NAI

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3JD2 \| pdb_00003jd2	Download File View File

Glutamate dehydrogenase in complex with NADH, open conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	NAI

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3JD3 \| pdb_00003jd3	Download File View File

Glutamate dehydrogenase in complex with NADH and GTP, open conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GTP, NAI

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3JD4 \| pdb_00003jd4	Download File View File

Glutamate dehydrogenase in complex with NADH and GTP, closed conformation

Borgnia, M.J., Banerjee, S., Merk, A., Matthies, D., Bartesaghi, A., Rao, P., Pierson, J., Earl, L.A., Falconieri, V., Subramaniam, S., Milne, J.L.S.

(2016) Mol Pharmacol 89: 645-651

Released	2016-04-27
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GTP, NAI

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3PVX \| pdb_00003pvx	Download File View File

Binary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV

Banerjee, S.

(2011) J Am Chem Soc 133: 12556-12568

Released	2011-08-10
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Saccharolobus solfataricus synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(APTPTP(PVX)PAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTP*C)-3') (nucleic acid)
Unique Ligands	CA

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3PW0 \| pdb_00003pw0	Download File View File

Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming dATP

Banerjee, S.

(2011) J Am Chem Soc 133: 12556-12568

Released	2011-08-10
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Saccharolobus solfataricus synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3') (nucleic acid) DNA (5'-D(TPTP(PVX)PAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid)
Unique Ligands	CA, DTP

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3PW2 \| pdb_00003pw2	Download File View File

Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-FAPY) with DNA Polymerase IV and incoming dTTP

Banerjee, S.

(2011) J Am Chem Soc 133: 12556-12568

Released	2011-08-10
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Saccharolobus solfataricus synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3') (nucleic acid) DNA (5'-D(TPTP(PVX)PAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid)
Unique Ligands	CA, TTP

1 to 25 of 284 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DDR | pdb_00001ddr

1DDS | pdb_00001dds

1KGE | pdb_00001kge

1KGF | pdb_00001kgf

1NQT | pdb_00001nqt

1NR1 | pdb_00001nr1

1NR7 | pdb_00001nr7

1OME | pdb_00001ome

1PQ4 | pdb_00001pq4

1RBW | pdb_00001rbw

1RBX | pdb_00001rbx

2B5B | pdb_00002b5b

2KZT | pdb_00002kzt

2MDR | pdb_00002mdr

3F9P | pdb_00003f9p

3J7H | pdb_00003j7h

3JCZ | pdb_00003jcz

3JD0 | pdb_00003jd0

3JD1 | pdb_00003jd1

3JD2 | pdb_00003jd2

3JD3 | pdb_00003jd3

3JD4 | pdb_00003jd4

3PVX | pdb_00003pvx

3PW0 | pdb_00003pw0

3PW2 | pdb_00003pw2