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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Becker, T."

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Search Summary

This query matches 102 Structures.

Refinements

Structure Determination Methodology

experimental (102)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (41)
	Homo sapiens (21)
	Saccharomyces cerevisiae S288C (14)
	Severe acute respiratory syndrome coronavirus 2 (9)
	Canis lupus familiaris (8)
	Escherichia coli K-12 (5)
	Escherichia coli (4)
	Saccharomyces cerevisiae W303 (4)
	Triticum aestivum (4)
	Oryctolagus cuniculus (3)

More...

Taxonomy

	Eukaryota (91)
	Riboviria (9)
	Bacteria (8)
	Archaea (5)
	other sequences (2)
	Duplodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (95)
	X-RAY DIFFRACTION (5)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (101)
	RNA (77)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (18)
	3.0 - 3.5 (31)
	3.5 - 4.0 (14)
	4.0 - 4.5 (5)
	> 4.5 (30)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (10)
	2010 - 2014 (15)
	2015 - 2019 (18)
	2020 - 2024 (55)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (38)
	Transferases (22)
	Lyases (14)
	Isomerases (1)

Membrane Protein Annotation

	OPM (16)
	PDBTM (14)
	MemProtMD (6)
	mpstruc (6)

Symmetry Type

	Asymmetric (94)
	Cyclic (7)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	All beta proteins (4)
	Low resolution protein structures (1)
	Alpha and beta proteins (a/b) (1)
	All alpha proteins (1)
	Small proteins (1)
	Peptides (2)

AllSelected

1 to 25 of 102 Structures

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1HJI \| pdb_00001hji	Download File View File

BACTERIOPHAGE HK022 NUN-PROTEIN-NUTBOXB-RNA COMPLEX

Faber, C., Schaerpf, M., Becker, T., Sticht, H., Roesch, P.

(2001) J Biological Chem 276: 32064

Released	2002-01-29
Method	SOLUTION NMR
Organisms	Lambdavirus lambda Shamshuipovirus HK022
Macromolecule	NUN-PROTEIN (protein) RNA (5-R(PGPCPCPCPUPGPAPAPAPAPAPGPGPGP*C)-3) (nucleic acid)

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1RY1 \| pdb_00001ry1	Download File View File

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Halic, M., Becker, T., Pool, M.R., Spahn, C.M., Grassucci, R.A., Frank, J., Beckmann, R.

(2004) Nature 427: 808-814

Released	2004-04-20
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Canis lupus familiaris Triticum aestivum
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 8

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1YSH \| pdb_00001ysh	Download File View File

Localization and dynamic behavior of ribosomal protein L30e

Halic, M., Becker, T., Frank, J., Spahn, C.M., Beckmann, R.

(2005) Nat Struct Mol Biol 12: 467-468

Released	2005-07-05
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Oryza sativa Triticum aestivum synthetic construct
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3

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2IW3 \| pdb_00002iw3	Download File View File

Elongation Factor 3 in complex with ADP

Andersen, C.B.F., Becker, T., Blau, M., Anand, M., Halic, M., Balar, B., Mielke, T., Boesen, T., Pedersen, J.S., Spahn, C.M.T., Kinzy, T.G., Andersen, G.R., Beckmann, R.

(2006) Nature 443: 663

Released	2006-08-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ELONGATION FACTOR 3A (protein)
Unique Ligands	ADP, SO4

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2IWH \| pdb_00002iwh	Download File View File

Structure of yeast Elongation Factor 3 in complex with ADPNP

Andersen, C.B.F., Becker, T., Blau, M., Anand, M., Halic, M., Balar, B., Mielke, T., Boesen, T., Pedersen, J.S., Spahn, C.M.T., Kinzy, T.G., Andersen, G.R., Beckmann, R.

(2006) Nature 443: 663

Released	2006-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ELONGATION FACTOR 3A (protein)
Unique Ligands	ANP, SO4

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2IX3 \| pdb_00002ix3	Download File View File

Structure of yeast Elongation Factor 3

Andersen, C.B.F., Becker, T., Blau, M., Anand, M., Halic, M., Balar, B., Mielke, T., Boesen, T., Pedersen, J.S., Spahn, C.M.T., Kinzy, T.G., Andersen, G.R., Beckmann, R.

(2006) Nature 443: 663

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ELONGATION FACTOR 3 (protein)
Unique Ligands	SO4

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2IX8 \| pdb_00002ix8	Download File View File

MODEL FOR EEF3 BOUND TO AN 80S RIBOSOME

Andersen, C.B.F., Becker, T., Blau, M., Anand, M., Halic, M., Balar, B., Mielke, T., Boesen, T., Pedersen, J.S., Spahn, C.M.T., Kinzy, T.G., Andersen, G.R., Beckmann, R.

(2006) Nature 443: 663-668

Released	2007-07-10
Method	ELECTRON MICROSCOPY 9.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ELONGATION FACTOR 3A (protein)

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2J28 \| pdb_00002j28	Download File View File

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Halic, M., Blau, M., Becker, T., Mielke, T., Pool, M.R., Wild, K., Sinning, I., Beckmann, R.

(2006) Nature 444: 508-511

Released	2006-11-08
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 31 Unique nucleic acid chains: 3
Unique Ligands	MG

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2J37 \| pdb_00002j37	Download File View File

MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS

Halic, M., Blau, M., Becker, T., Mielke, T., Pool, M.R., Wild, K., Sinning, I., Beckmann, R.

(2006) Nature 444: 507-511

Released	2006-11-08
Method	ELECTRON MICROSCOPY 8.7 Å
Organisms	Canis sp. Haloarcula marismortui Homo sapiens Triticum sp.
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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2WW9 \| pdb_00002ww9	Download File View File

Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome

Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.

(2009) Science 326: 1369

Released	2009-12-08
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 4

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2WWA \| pdb_00002wwa	Download File View File

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.

(2009) Science 326: 1369

Released	2009-12-08
Method	ELECTRON MICROSCOPY 8.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 4

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2WWB \| pdb_00002wwb	Download File View File

CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME

Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.

(2009) Science 326: 1369

Released	2009-12-08
Method	ELECTRON MICROSCOPY 6.48 Å
Organisms	Canis lupus familiaris Triticum aestivum
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 4

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2XL1 \| pdb_00002xl1	Download File View File

Structural basis of translational stalling by human cytomegalovirus (hCMV) and fungal arginine attenuator peptide (AAP)

Meyer, N.H., Sattler, M.

(2010) Mol Cell 40: 138

Released	2010-10-20
Method	SOLUTION NMR
Organisms	Neurospora crassa
Macromolecule	ARGININE ATTENUATOR PEPTIDE (protein)

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3IZD \| pdb_00003izd	Download File View File

Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.

Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.

(2010) Proc Natl Acad Sci U S A 107: 19748-19753

Released	2010-12-01
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	rRNA expansion segment ES27L in an "out" conformation (nucleic acid)

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3IZQ \| pdb_00003izq	Download File View File

Structure of the Dom34-Hbs1-GDPNP complex bound to a translating ribosome

Becker, T., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Sieber, H., Abdel Motaal, B., Mielke, T., Berninghausen, O., Beckmann, R.

(2011) Nat Struct Mol Biol 18: 715-720

Released	2011-06-01
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Elongation factor 1 alpha-like protein (protein) Protein DOM34 (protein)

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3J15 \| pdb_00003j15	Download File View File

Model of ribosome-bound archaeal Pelota and ABCE1

Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.

(2012) Nature 482: 501-506

Released	2012-02-22
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Pyrococcus furiosus Thermococcus kodakarensis
Macromolecule	ABC transporter ATP-binding protein (protein) Protein pelota (protein)
Unique Ligands	ADP, SF4

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3J16 \| pdb_00003j16	Download File View File

Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners

(2012) Nature 482: 501-506

Released	2012-02-22
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 3
Unique Ligands	ATP, MG, SF4

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3KL4 \| pdb_00003kl4	Download File View File

Recognition of a signal peptide by the signal recognition particle

Janda, C.Y., Nagai, K., Li, J., Oubridge, C.

(2010) Nature 465: 507-510

Released	2010-03-31
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Saccharolobus solfataricus P2 Saccharomyces cerevisiae
Macromolecule	Signal peptide of yeast dipeptidyl aminopeptidase B (protein) Signal recognition 54 kDa protein (protein)

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4CG5 \| pdb_00004cg5	Download File View File

Cryo-EM of the Sec61-complex bound to the 80S ribosome translating a secretory substrate

Gogala, M., Becker, T., Beatrix, B., Barrio-Garcia, C., Berninghausen, O., Beckmann, R.

(2014) Nature 506: 107

Released	2014-02-05
Method	ELECTRON MICROSCOPY 7.4 Å
Organisms	Canis lupus familiaris
Macromolecule	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1 (protein) PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA (protein) PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA (protein)

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4CG6 \| pdb_00004cg6	Download File View File

Cryo-em of the Sec61-complex bound to the 80s ribosome translating a membrane-inserting substrate

Gogala, M., Becker, T., Beatrix, B., Barrio-Garcia, C., Berninghausen, O., Beckmann, R.

(2014) Nature 506: 107

Released	2014-02-05
Method	ELECTRON MICROSCOPY 7.8 Å
Organisms	Canis lupus familiaris
Macromolecule	PEPTIDE (protein) PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1 (protein) PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA (protein) PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA (protein)

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4CG7 \| pdb_00004cg7	Download File View File

Cryo-EM of the Sec61-complex bound to the idle 80S ribosome

Gogala, M., Becker, T., Beatrix, B., Barrio-Garcia, C., Berninghausen, O., Beckmann, R.

(2014) Nature 506: 107

Released	2014-02-05
Method	ELECTRON MICROSCOPY 6.9 Å
Organisms	Canis lupus familiaris
Macromolecule	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1 (protein) PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA (protein) TRANSPORT PROTEIN SEC61 SUBUNIT BETA (protein)

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4CRM \| pdb_00004crm	Download File View File

Cryo-EM of a pre-recycling complex with eRF1 and ABCE1

Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R.

(2014) Cell Rep 8: 59

Released	2014-07-23
Method	ELECTRON MICROSCOPY 8.75 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 (protein) TRANSLATION INITIATION FACTOR RLI1 (protein)
Unique Ligands	ADP, ATP, MG, SF4

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4CRN \| pdb_00004crn	Download File View File

Cryo-EM of a pretermination complex with eRF1 and eRF3

Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R.

(2014) Cell Rep 8: 59

Released	2014-07-23
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ERF1 IN RIBOSOME-BOUND ERF1-ERF3-GDPNP COMPLEX (protein) ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP COMPLEX (protein)
Unique Ligands	GNP

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4V5H \| pdb_00004v5h	Download File View File

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Seidelt, B., Innis, C.A., Wilson, D.N., Gartmann, M., Armache, J., Villa, E., Trabuco, L.G., Becker, T., Mielke, T., Schulten, K., Steitz, T.A., Beckmann, R.

(2009) Science 326: 1412-1415

Released	2014-07-09
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 5

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4V6I \| pdb_00004v6i	Download File View File

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

(2010) Proc Natl Acad Sci U S A 107: 19748-19753

Released	2014-07-09
Method	ELECTRON MICROSCOPY 8.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 6

1 to 25 of 102 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1HJI | pdb_00001hji

1RY1 | pdb_00001ry1

1YSH | pdb_00001ysh

2IW3 | pdb_00002iw3

2IWH | pdb_00002iwh

2IX3 | pdb_00002ix3

2IX8 | pdb_00002ix8

2J28 | pdb_00002j28

2J37 | pdb_00002j37

2WW9 | pdb_00002ww9

2WWA | pdb_00002wwa

2WWB | pdb_00002wwb

2XL1 | pdb_00002xl1

3IZD | pdb_00003izd

3IZQ | pdb_00003izq

3J15 | pdb_00003j15

3J16 | pdb_00003j16

3KL4 | pdb_00003kl4

4CG5 | pdb_00004cg5

4CG6 | pdb_00004cg6

4CG7 | pdb_00004cg7

4CRM | pdb_00004crm

4CRN | pdb_00004crn

4V5H | pdb_00004v5h

4V6I | pdb_00004v6i