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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Byrnes, L.J."

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Search Summary

This query matches 1,642 Structures.

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Structure Determination Methodology

experimental (1,642)

Scientific Name of Source Organism

	Homo sapiens (679)
	Severe acute respiratory syndrome coronavirus 2 (89)
	Mus musculus (82)
	synthetic construct (69)
	Escherichia coli (59)
	Influenza A virus (42)
	Saccharomyces cerevisiae (24)
	Bacillus subtilis (22)
	Rattus norvegicus (22)
	Human immunodeficiency virus 1 (18)

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Taxonomy

	Eukaryota (978)
	Bacteria (485)
	Riboviria (299)
	other sequences (71)
	Archaea (38)
	Duplodnaviria (16)
	Viruses incertae sedis (12)
	Eukaryota (eukaryotes) (9)
	Monodnaviria (2)
	Riboviria (RNA viruses and viroids) (2)

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Experimental Method

	X-RAY DIFFRACTION (1,193)
	ELECTRON MICROSCOPY (342)
	SOLUTION NMR (99)
	ELECTRON CRYSTALLOGRAPHY (4)
	SOLID-STATE NMR (4)

Polymer Entity Type

	Protein (1,620)
	RNA (43)
	DNA (39)

Refinement Resolution (Å)

	1.0 - 1.5 (54)
	1.5 - 2.0 (322)
	2.0 - 2.5 (454)
	2.5 - 3.0 (365)
	3.0 - 3.5 (189)
	3.5 - 4.0 (72)
	4.0 - 4.5 (28)
	> 4.5 (45)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (14)
	2000 - 2004 (63)
	2005 - 2009 (280)
	2010 - 2014 (291)
	2015 - 2019 (284)
	2020 - 2024 (641)
	2025 - 2029 (67)

Enzyme Classification Name

	Hydrolases (295)
	Transferases (265)
	Oxidoreductases (86)
	Translocases (23)
	Ligases (32)
	Lyases (12)
	Isomerases (11)

Membrane Protein Annotation

	PDBTM (191)
	mpstruc (132)
	OPM (119)
	MemProtMD (117)

Symmetry Type

	Asymmetric (983)
	Cyclic (591)
	Dihedral (65)
	Helical (36)
	Icosahedral (6)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (252)
	Artifacts (174)
	Alpha and beta proteins (a/b) (139)
	Alpha and beta proteins (a+b) (132)
	Coiled coil proteins (86)
	All alpha proteins (99)
	Membrane and cell surface proteins and peptides (27)
	Multi-domain proteins (alpha and beta) (11)
	Small proteins (5)
	Designed proteins (1)

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AllSelected

1 to 25 of 1,642 Structures

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1AIL \| pdb_00001ail	Download File View File

N-TERMINAL FRAGMENT OF NS1 PROTEIN FROM INFLUENZA A VIRUS

Liu, J., Lynch, P.A., Chien, C., Montelione, G.T., Krug, R.M., Berman, H.M.

(1997) Nat Struct Biol 4: 896-899

Released	1997-10-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/Udorn/307/1972(H3N2))
Macromolecule	NONSTRUCTURAL PROTEIN NS1 (protein)

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1BQH \| pdb_00001bqh	Download File View File

MURINE CD8AA ECTODOMAIN FRAGMENT IN COMPLEX WITH H-2KB/VSV8

Wang, J.H., Reinherz, E.L., Kern, P.S., Chang, H.C.

(1998) Immunity 9: 519-530

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (BETA-2-MICROGLOBULIN ) (protein) PROTEIN (CD8A OR LYT2 OR LYT-2) (protein) PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) (protein) PROTEIN (VSV8) (protein)
Unique Ligands	NAG

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1CE0 \| pdb_00001ce0	Download File View File

TRIMERIZATION SPECIFICITY IN HIV-1 GP41: ANALYSIS WITH A GCN4 LEUCINE ZIPPER MODEL

Shu, W., Ji, H., Lu, M.

(1999) Biochemistry 38: 5378-5385

Released	1999-03-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (LEUCINE ZIPPER MODEL H38-P1) (protein)

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1CLK \| pdb_00001clk	Download File View File

CRYSTAL STRUCTURE OF STREPTOMYCES DIASTATICUS NO.7 STRAIN M1033 XYLOSE ISOMERASE AT 1.9 A RESOLUTION WITH PSEUDO-I222 SPACE GROUP

Niu, L., Teng, M., Zhu, X., Gong, W.

(2000) Acta Crystallogr D Biol Crystallogr 56: 129-136

Released	2000-05-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces diastaticus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	CO, MG

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1D9K \| pdb_00001d9k	Download File View File

CRYSTAL STRUCTURE OF COMPLEX BETWEEN D10 TCR AND PMHC I-AK/CA

Reinherz, E.L., Tan, K., Tang, L., Kern, P., Liu, J.-H., Xiong, Y., Hussey, R.E., Smolyar, A., Hare, B., Zhang, R., Joachimiak, A., Chang, H.-C., Wagner, G., Wang, J.-H.

(1999) Science 286: 1913-1921

Released	1999-12-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	CONALBUMIN PEPTIDE (protein) MHC I-AK A CHAIN (ALPHA CHAIN) (protein) MHC I-AK B CHAIN (BETA CHAIN) (protein) T-CELL RECEPTOR D10 (ALPHA CHAIN) (protein) T-CELL RECEPTOR D10 (BETA CHAIN) (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, NDG

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1DLB \| pdb_00001dlb	Download File View File

HELICAL INTERACTIONS IN THE HIV-1 GP41 CORE REVEALS STRUCTURAL BASIS FOR THE INHIBITORY ACTIVITY OF GP41 PEPTIDES

Shu, W., Liu, J., Ji, H., Rading, L., Jiang, S., Lu, M.

(2000) Biochemistry 39: 1634-1642

Released	1999-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 ENVELOPE GLYCOPROTEIN GP41 (protein)

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1EI8 \| pdb_00001ei8	Download File View File

STRUCTURAL CONSEQUENCES OF A DISCONTINUITY IN THE REPEATING TRIPEPTIDE SEQUENCE OF A COLLAGEN-LIKE TRIPLE-HELICAL PEPTIDE

Berman, H.M., Liu, J.

(2006) J Mol Biology 362: 298-311

Released	2003-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	COLLAGEN-LIKE PEPTIDE (PRO-HYP-GLY)4-PG-(PRO-HYP-GLY)5 (protein)

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1EQ7 \| pdb_00001eq7	Download File View File

CORE STRUCTURE OF THE OUTER MEMBRANE LIPOPROTEIN FROM ESCHERICHIA COLI AT 1.9 ANGSTROM RESOLUTION

Shu, W., Liu, J., Ji, H., Lu, M.

(2000) J Mol Biology 299: 1101-1112

Released	2000-06-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	OUTER MEMBRANE LIPOPROTEIN (protein)

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1F23 \| pdb_00001f23	Download File View File

CONTRIBUTION OF A BURIED HYDROGEN BOND TO HIV-1 ENVELOPE GLYCOPROTEIN STRUCTURE AND FUNCTION

Liu, J., Shu, W., Fagan, M., Nunberg, J.H., Lu, M.

(2001) Biochemistry 40: 2797-2807

Released	2001-06-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (protein)

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1FNN \| pdb_00001fnn	Download File View File

CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM

Liu, J., Smith, C.L., DeRyckere, D., DeAngelis, K., Martin, G.S., Berger, J.M.

(2000) Mol Cell 6: 637-648

Released	2000-10-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	CELL DIVISION CONTROL PROTEIN 6 (protein)
Unique Ligands	ADP, MG

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1H22 \| pdb_00001h22	Download File View File

Structure of acetylcholinesterase (E.C. 3.1.1.7) complexed with (S,S)-(-)-bis(10)-hupyridone at 2.15A resolution

Wong, D.M., Greenblatt, H.M., Carlier, P.R., Han, Y.-F., Pang, Y.-P., Silman, I., Sussman, J.L.

(2003) J Am Chem Soc 125: 363

Released	2002-12-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Tetronarce californica
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	E10, NAG

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1H23 \| pdb_00001h23	Download File View File

Structure of acetylcholinesterase (E.C. 3.1.1.7) complexed with (S,S)-(-)-bis(12)-hupyridone at 2.15A resolution

Wong, D.M., Greenblatt, H.M., Carlier, P.R., Han, Y.F., Pang, Y.P., Silman, I., Sussman, J.L.

(2003) J Am Chem Soc 125: 363

Released	2002-12-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Tetronarce californica
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	E12, NAG

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1HUO \| pdb_00001huo	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPC)-3' (nucleic acid)
Unique Ligands	CR, TTE

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1HUZ \| pdb_00001huz	Download File View File

CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP

Arndt, J.W., Gong, W., Zhong, X., Showalter, A.K., Liu, J., Lin, Z., Paxson, C., Tsai, M.-D., Chan, M.K.

(2001) Biochemistry 40: 5368-5375

Released	2001-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	DNA POLYMERASE BETA (protein) 5'-D(APAPTPAPGPGPCPGPTPCPG)-3' (nucleic acid) 5'-D(PCPGPAPCPGPCPCP*T)-3' (nucleic acid)
Unique Ligands	CR, MDN

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1I5X \| pdb_00001i5x	Download File View File

HIV-1 GP41 CORE

Liu, J., Lu, M.

(2001) J Virol 75: 11146-11156

Released	2002-09-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (GP41) (protein)
Unique Ligands	SO4

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1I5Y \| pdb_00001i5y	Download File View File

HIV-1 GP41 CORE

Liu, J., Lu, M.

(2001) J Virol 75: 11146-11156

Released	2002-09-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (GP41) (protein)
Unique Ligands	SO4

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1IG3 \| pdb_00001ig3	Download File View File

Mouse Thiamin Pyrophosphokinase Complexed with Thiamin

Timm, D.E., Liu, J., Baker, L.-J., Harris, R.A.

(2001) J Mol Biology 310: 195-204

Released	2001-04-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	thiamin pyrophosphokinase (protein)
Unique Ligands	SO4, VIB

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1IMX \| pdb_00001imx	Download File View File

1.8 Angstrom crystal structure of IGF-1

Vajdos, F.F., Ultsch, M., Schaffer, M.L., Deshayes, K.D., Liu, J., Skelton, N.J., de Vos, A.M.

(2001) Biochemistry 40: 11022-11029

Released	2001-09-05
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Insulin-like Growth Factor 1A (protein)
Unique Ligands	BR, CPQ

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1J4J \| pdb_00001j4j	Download File View File

Crystal Structure of Tabtoxin Resistance Protein (form II) complexed with an Acyl Coenzyme A

He, H., Ding, Y., Bartlam, M., Zhang, R., Duke, N., Joachimiak, A., Shao, Y., Cao, Z., Tang, H., Liu, Y., Jiang, F., Liu, J., Zhao, N., Rao, Z.

(2003) J Mol Biology 325: 1019-1030

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pseudomonas amygdali pv. tabaci
Macromolecule	TABTOXIN RESISTANCE PROTEIN (protein)
Unique Ligands	ACO