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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chen, F."

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Search Summary

This query matches 92 Structures.

Refinements

Structure Determination Methodology

experimental (92)

Scientific Name of Source Organism

	Homo sapiens (43)
	Pseudomonas aeruginosa (5)
	Arabidopsis thaliana (4)
	Pseudomonas phage phiYY (4)
	Recombinant Hepatitis C virus HK6a/JFH-1 (4)
	synthetic construct (4)
	Selenomonas sp. (3)
	Bos taurus (2)
	Candidatus Cloacimonetes bacterium ADurb.Bin088 (2)
	Coxsackievirus A16 (2)

More...

Taxonomy

	Eukaryota (63)
	Bacteria (21)
	Riboviria (12)
	other sequences (4)
	unclassified sequences (2)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (75)
	ELECTRON MICROSCOPY (14)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (92)
	RNA (7)
	NA-hybrid (3)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (19)
	2.0 - 2.5 (25)
	2.5 - 3.0 (19)
	3.0 - 3.5 (13)
	3.5 - 4.0 (1)
	> 4.5 (3)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (18)
	2015 - 2019 (23)
	2020 - 2024 (46)

Enzyme Classification Name

	Oxidoreductases (11)
	Hydrolases (14)
	Transferases (9)
	Lyases (4)
	Ligases (3)

Membrane Protein Annotation

	MemProtMD (5)
	PDBTM (5)
	OPM (1)

Symmetry Type

	Asymmetric (63)
	Cyclic (26)
	Dihedral (3)
	Icosahedral (2)

SCOP Classification

	All beta proteins (11)
	All alpha proteins (6)
	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (3)
	Artifacts (1)

AllSelected

1 to 25 of 92 Structures

Page 1 of 4

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1JJR \| pdb_00001jjr	Download File View File

The Three-Dimensional Structure of the C-terminal DNA Binding Domain of Human Ku70

Zhang, Z., Chen, Y.

(2001) J Biological Chem 276: 38231-38236

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	THYROID AUTOANTIGEN (protein)

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2A7R \| pdb_00002a7r	Download File View File

Crystal structure of human Guanosine Monophosphate reductase 2 (GMPR2)

Li, J., Wei, Z., Zheng, M., Gu, X., Deng, Y., Qiu, R., Chen, F., Ji, C., Gong, W., Xie, Y., Mao, Y.

(2006) J Mol Biology 355: 980-988

Released	2006-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	GMP reductase 2 (protein)
Unique Ligands	5GP, SO4

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2KOU \| pdb_00002kou	Download File View File

DICER LIKE protein

Qin, H., Song, J., Yuan, Y.A.

(2010) RNA

Released	2010-02-16
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Dicer-like protein 4 (protein)

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2NQ3 \| pdb_00002nq3	Download File View File

Crystal structure of the C2 Domain of Human Itchy Homolog E3 Ubiquitin Protein Ligase

Walker, J.R., Avvakumov, G.V., Xue, S., Butler-Cole, C., Finerty Jr., P.J., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Itchy homolog E3 ubiquitin protein ligase (protein)
Unique Ligands	CL

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2NSQ \| pdb_00002nsq	Download File View File

Crystal structure of the C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein

To be published

Released	2006-12-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase NEDD4-like protein (protein)
Unique Ligands	EDO, GOL

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3B5I \| pdb_00003b5i	Download File View File

Crystal structure of Indole-3-acetic Acid Methyltransferase

Ferrer, J.-L., Noel, J.P.

(2008) Plant Physiol 146: 455-467

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Arabidopsis thaliana
Macromolecule	S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein (protein)
Unique Ligands	MG, SAH

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3KYS \| pdb_00003kys	Download File View File

Crystal structure of human YAP and TEAD complex

Li, Z., Zhao, B., Wang, P., Chen, F., Dong, Z., Yang, H., Guan, K.L., Xu, Y.

(2010) Genes Dev 24: 235-240

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	65 kDa Yes-associated protein (protein) Transcriptional enhancer factor TEF-1 (protein)

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3QCW \| pdb_00003qcw	Download File View File

Structure of neurexin 1 alpha (domains LNS1-LNS6), no splice inserts

Rudenko, G.

(2011) Structure 19: 779-789

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bos taurus
Macromolecule	Neurexin-1-alpha (protein)
Unique branched monosaccharides	NAG

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3R05 \| pdb_00003r05	Download File View File

Structure of neurexin 1 alpha (domains LNS1-LNS6), with splice insert SS3

Venugopal, V., Rudenko, G.

(2011) Structure 19: 779-789

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Bos taurus
Macromolecule	Neurexin-1-alpha (protein)
Unique branched monosaccharides	NAG

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3VAX \| pdb_00003vax	Download File View File

Crystal structure of DndA from streptomyces lividans

Zhang, Z., Chen, F., Lin, K., Wu, G.

(2012) PLoS One 7: e36635-e36635

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces lividans
Macromolecule	Putative uncharacterized protein dndA (protein)
Unique Ligands	PLP

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4GU0 \| pdb_00004gu0	Download File View File

Crystal structure of LSD2 with H3

Chen, F., Yang, H., Dong, Z., Fang, J., Zhu, T., Gong, W., Xu, Y.

(2013) Cell Res 23: 306-309

Released	2013-02-13
Method	X-RAY DIFFRACTION 3.103 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.3 (protein) Lysine-specific histone demethylase 1B (protein)
Unique Ligands	FAD, ZN

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4GU1 \| pdb_00004gu1	Download File View File

Crystal structure of LSD2

Chen, F., Dong, Z., Fang, J., Yang, Y., Li, Z., Xu, Y., Yang, H., Wang, P., Fang, R., Shi, Y., Xu, Y.

(2013) Mol Cell 49: 558-570

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.939 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1B (protein)
Unique Ligands	CL, FAD, NA, ZN

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4GUR \| pdb_00004gur	Download File View File

Crystal structure of LSD2-NPAC with H3 in space group P21

Chen, F., Dong, Z., Fang, J., Yang, Y., Li, Z., Xu, Y., Yang, H., Wang, P., Fang, R., Shi, Y., Xu, Y.

(2013) Mol Cell 49: 558-570

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.3 (protein) Lysine-specific histone demethylase 1B (protein) Putative oxidoreductase GLYR1 (protein)
Unique Ligands	FAD, GOL, ZN

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4GUS \| pdb_00004gus	Download File View File

Crystal structure of LSD2-NPAC with H3 in space group P3221

Chen, F., Dong, Z., Fang, J., Yang, Y., Li, Z., Xu, Y., Yang, H., Wang, P., Fang, R., Shi, Y., Xu, Y.

(2013) Mol Cell 49: 558-570

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.3 (protein) Lysine-specific histone demethylase 1B (protein) Putative oxidoreductase GLYR1 (protein)
Unique Ligands	FAD, GOL, IOD, ZN

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4GUT \| pdb_00004gut	Download File View File

Crystal structure of LSD2-NPAC

Chen, F., Dong, Z., Fang, J., Yang, Y., Li, Z., Xu, Y., Yang, H., Wang, P., Fang, R., Shi, Y., Xu, Y.

(2013) Mol Cell 49: 558-570

Released	2013-01-16
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1B (protein) Putative oxidoreductase GLYR1 (protein)
Unique Ligands	FAD, GOL, PGE, ZN

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4GUU \| pdb_00004guu	Download File View File

Crystal structure of LSD2-NPAC with tranylcypromine

Chen, F., Dong, Z., Fang, J., Yang, Y., Li, Z., Xu, Y., Yang, H., Wang, P., Xu, Y.

(2013) Mol Cell 49: 558-570

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.302 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1B (protein) Putative oxidoreductase GLYR1 (protein)
Unique Ligands	FA9, ZN

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4GY5 \| pdb_00004gy5	Download File View File

Crystal structure of the tandem tudor domain and plant homeodomain of UHRF1 with Histone H3K9me3

Cheng, J., Yang, Y., Fang, J., Xiao, J., Zhu, T., Chen, F., Wang, P., Xu, Y.

(2013) J Biological Chem 288: 1329-1339

Released	2012-11-14
Method	X-RAY DIFFRACTION 2.956 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UHRF1 (protein) Peptide from Histone H3.3 (protein)
Unique Ligands	ZN

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4HSU \| pdb_00004hsu	Download File View File

Crystal structure of LSD2-NPAC with H3(1-26)in space group P21

Chen, F., Dong, Z., Fang, J., Xu, Y.

(2013) Cell Res 23: 306-309

Released	2013-02-13
Method	X-RAY DIFFRACTION 1.988 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Histone H3 (protein) Lysine-specific histone demethylase 1B (protein) Putative oxidoreductase GLYR1 (protein)
Unique Ligands	FAD, ZN

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4N5G \| pdb_00004n5g	Download File View File

Crystal Structure of RXRa LBD complexed with a synthetic modulator K8012

Aleshin, A.E., Su, Y., Zhang, X., Liddington, R.C.

(2014) Chem Biol 21: 596-607

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	K09

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4N8R \| pdb_00004n8r	Download File View File

Crystal structure of RXRa LBD complexed with a synthetic modulator K-8008

Aleshin, A.E., Su, Y., Zhang, X., Liddington, R.C.

(2014) Chem Biol 21: 596-607

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	K08

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4QBA \| pdb_00004qba	Download File View File

Crystal structure of the effector-binding domain of S. aureus CcpE

Liu, X., Lan, L., Yang, C.G.

(2014) Proc Natl Acad Sci U S A 111: E4981-E4990

Released	2014-11-19
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Staphylococcus aureus subsp. aureus MSSA476
Macromolecule	LysR family regulatory protein (protein)
Unique Ligands	CL

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4RBW \| pdb_00004rbw	Download File View File

Crystal structure of human alpha-defensin 5, HD5 (Thr7Arg Glu21Arg mutant)

Pazgier, M., Gohain, N., Tolbert, W.D.

(2015) J Med Chem 58: 3083-3093

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Defensin-5 (protein)
Unique Ligands	CL, SO4

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4RBX \| pdb_00004rbx	Download File View File

Crystal structure of human alpha-defensin 5, HD5 (Glu21Arg mutant)

Pazgier, M., Gohain, N., Tolbert, W.D.

(2015) J Med Chem 58: 3083-3093

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Defensin-5 (protein)
Unique Ligands	SO4

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4RQT \| pdb_00004rqt	Download File View File

Alcohol Dehydrogenase Crystal Structure

Xu, Y.W.

(2014) Biochimie 108C: 33-39

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Alcohol dehydrogenase class-P (protein)
Unique Ligands	ACY, SO4, ZN