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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cheng, S."

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Search Summary

This query matches 51 Structures.

Refinements

Structure Determination Methodology

experimental (51)

Scientific Name of Source Organism

	Homo sapiens (15)
	Caenorhabditis elegans (8)
	Drosophila melanogaster (7)
	synthetic construct (5)
	Camelus bactrianus (4)
	Rattus norvegicus (3)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (3)
	Variovorax paradoxus (3)
	Anaplasma marginale (2)
	Camelus dromedarius (2)

More...

Taxonomy

	Eukaryota (41)
	Bacteria (11)
	other sequences (5)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (42)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (51)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (16)
	2.0 - 2.5 (11)
	2.5 - 3.0 (10)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (3)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (2)
	2015 - 2019 (14)
	2020 - 2024 (33)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (3)
	Lyases (4)
	Oxidoreductases (3)

Membrane Protein Annotation

	mpstruc (6)
	MemProtMD (2)
	PDBTM (2)
	OPM (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (7)
	All beta proteins (3)
	Artifacts (3)

AllSelected

1 to 25 of 51 Structures

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1OZ1 \| pdb_00001oz1	Download File View File

P38 MITOGEN-ACTIVATED KINASE IN COMPLEX WITH 4-AZAINDOLE INHIBITOR

Lovejoy, B., Villasenor, A., Browner, M., Dunten, P.

(2003) J Med Chem 46: 4702-4713

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	FPH

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4P2S \| pdb_00004p2s	Download File View File

Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment

Sinha, S., Cheng, S., Sung, Y.W., McNamara, D.E., Sawaya, M.R., Yeates, T.O., Bobik, T.A.

(2014) J Mol Biology 426: 2328

Released	2014-05-14
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26
Macromolecule	Putative propanediol utilization protein PduA (protein)
Unique Ligands	GOL, SO4, TRS

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4PPD \| pdb_00004ppd	Download File View File

PduA K26A, crystal form 2

McNamara, D.E., Sawaya, M.R., Bobik, T.A., Yeates, T.O.

(2014) J Mol Biology 426: 2328-2345

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Propanediol utilization protein PduA (protein)
Unique Ligands	GOL, SO4

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5KWR \| pdb_00005kwr	Download File View File

Crystal structure of rat Cerebellin-1

Cheng, S., Ozkan, E.

(2016) Structure 24: 2163-2173

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.795 Å
Organisms	Rattus norvegicus
Macromolecule	Cerebellin-1 (protein)
Unique branched monosaccharides	FUC, NAG

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5L2E \| pdb_00005l2e	Download File View File

Crystal structure of rat Glutamate receptor delta-2 extracellular domain

Cheng, S., Ozkan, E.

(2016) Structure 24: 2163-2173

Released	2016-12-28
Method	X-RAY DIFFRACTION 4.152 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor ionotropic, delta-2,Glutamate receptor ionotropic, delta-2 (protein)

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6IEW \| pdb_00006iew	Download File View File

The crystal structure of the dNxf2 UBA domain in complex with Panoramix

Huang, Y., Cheng, S.

(2019) Nat Cell Biol 21: 1261-1272

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Drosophila melanogaster
Macromolecule	Fusion protein of Nuclear RNA export factor 2 and Protein panoramix (protein)
Unique Ligands	GOL

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6IHJ \| pdb_00006ihj	Download File View File

Crystal structure of Drosophila Nxf1 NTF2 domain in complex with Nxt1/p15

Huang, Y., Yuan, X.

(2019) Nat Cell Biol 21: 1261-1272

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	NTF2-related export protein (protein) Nuclear RNA export factor 1 (protein)

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6IR1 \| pdb_00006ir1	Download File View File

Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution

Ding, Y., Wang, Z.Y., Hu, R.T., Chen, X.

(2021) Protein Sci 30: 2298-2309

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.919 Å
Organisms	Anaplasma marginale Camelus bactrianus
Macromolecule	MCherry fluorescent protein (protein) mCherry's nanobody LaM4 (protein)

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6IR2 \| pdb_00006ir2	Download File View File

Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM2 at 1.4 Angstron resolution

Ding, Y., Wang, Z.Y., Hu, R.T., Chen, X.

(2021) Protein Sci 30: 2298-2309

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.393 Å
Organisms	Anaplasma marginale Camelus bactrianus
Macromolecule	MCherry fluorescent protein (protein) mCherry's nanobody LaM2 (protein)

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6K2U \| pdb_00006k2u	Download File View File

Crystal structure of Thr66 ADP-ribosylated ubiquitin

Wang, X., Zhou, Y., Zhu, Y.

(2020) Mol Cell 78: 641-652.e9

Released	2020-03-18
Method	X-RAY DIFFRACTION 2.554 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-C (protein)
Unique Ligands	APR, MG, ZN

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6NRQ \| pdb_00006nrq	Download File View File

Crystal structure of Dpr10 IG1 bound to DIP-alpha IG1

Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.

(2019) Elife 8:

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Defective proboscis extension response 10, isoform A (protein) Dpr-interacting protein alpha, isoform A (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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6NRR \| pdb_00006nrr	Download File View File

Crystal structure of Dpr11 IG1 bound to DIP-gamma IG+IG2

Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.

(2019) Elife 8:

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Drosophila melanogaster
Macromolecule	Defective proboscis extension response 11, isoform B (protein) Dpr-interacting protein gamma (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	BMA, FUC, NAG

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6NRW \| pdb_00006nrw	Download File View File

Crystal structure of Dpr1 IG1 bound to DIP-eta IG1

Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.

(2019) Elife 8:

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	DPR1 (protein) Dpr-interacting protein eta, isoform B (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, FUC, NAG

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6NRX \| pdb_00006nrx	Download File View File

Crystal structure of DIP-eta IG1 homodimer

Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.

(2019) Elife 8:

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Drosophila melanogaster
Macromolecule	Dpr-interacting protein eta, isoform B (protein)
Unique Ligands	GOL, NAG

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6NS1 \| pdb_00006ns1	Download File View File

Crystal structure of DIP-gamma IG1+IG2

Cheng, S., Park, Y.J., Kurleto, J.D., Ozkan, E.

(2019) Elife 8:

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Drosophila melanogaster
Macromolecule	Dpr-interacting protein gamma (protein)
Unique branched monosaccharides	FUC, NAG

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6ON6 \| pdb_00006on6	Download File View File

Crystal Structure of the RIG-5 IG1 homodimer

Cheng, S., Kurleto, J.D., Ozkan, E.

(2019) Proc Natl Acad Sci U S A 116: 9837-9842

Released	2019-05-15
Method	X-RAY DIFFRACTION 1.423 Å
Organisms	Caenorhabditis elegans
Macromolecule	NeuRonal IgCAM-5 (protein)
Unique Ligands	GOL, NAG

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6ON9 \| pdb_00006on9	Download File View File

Crystal Structure of the ZIG-8-RIG-5 IG1-IG1 heterodimer, tetragonal form

Cheng, S., Kurleto, J.D., Ozkan, E.

(2019) Proc Natl Acad Sci U S A 116: 9837-9842

Released	2019-05-15
Method	X-RAY DIFFRACTION 1.995 Å
Organisms	Caenorhabditis elegans
Macromolecule	NeuRonal IgCAM-5 (protein) Zwei Ig domain protein zig-8 (protein)
Unique Ligands	NA, SO4
Unique branched monosaccharides	FUC, NAG

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6ONB \| pdb_00006onb	Download File View File

Crystal Structure of the ZIG-8-RIG-5 IG1-IG1 heterodimer, monoclinic form

Cheng, S., Kurleto, J.D., Ozkan, E.

(2019) Proc Natl Acad Sci U S A 116: 9837-9842

Released	2019-05-15
Method	X-RAY DIFFRACTION 1.696 Å
Organisms	Caenorhabditis elegans
Macromolecule	NeuRonal IgCAM-5 (protein) Zwei Ig domain protein zig-8 (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	NAG

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6PLL \| pdb_00006pll	Download File View File

Crystal structure of the ZIG-8 IG1 homodimer

Cheng, S., Ozkan, E.

(2019) Proc Natl Acad Sci U S A 116: 9837-9842

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.693 Å
Organisms	Caenorhabditis elegans
Macromolecule	Zwei Ig domain protein zig-8 (protein)
Unique Ligands	NAG, SO4

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6VYD \| pdb_00006vyd	Download File View File

Terpenoid Cyclase FgGS in Complex with Mg, Inorganic Pyrophosphate, and Benzyltriethylammonium cation

Herbst-Gervasoni, C.J., Christianson, D.W.

(2020) Nat Commun 11: 3958-3958

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Fusarium graminearum PH-1
Macromolecule	Terpenoid cyclase FgGS (protein)
Unique Ligands	BTM, CL, EDO, MG, NA, POP, SO4

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6W26 \| pdb_00006w26	Download File View File

Terpenoid Cyclase FgGS in Complex with Mg, Inorganic Pyrophosphate, and Imidazole

Herbst-Gervasoni, C.J., Christianson, D.W.

(2020) Nat Commun 11: 3958-3958

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Fusarium graminearum PH-1
Macromolecule	Terpenoid cyclase FgGS (protein)
Unique Ligands	EDO, GOL, IMD, MG, NA, POP, SO4

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7DN8 \| pdb_00007dn8	Download File View File

Crystal structure of Salmonella effector SopF in complex with ARF1

Ding, J., Shao, F.

(2022) Nat Struct Mol Biol 29: 67-77

Released	2021-12-15
Method	X-RAY DIFFRACTION 2.6084 Å
Organisms	Homo sapiens Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	ADP-ribosylation factor 1 (protein) Putative cytoplasmic protein (protein)
Unique Ligands	GDP, MG

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7DN9 \| pdb_00007dn9	Download File View File

Crystal structure of Salmonella effector in complex with NAD and host co-factor ARF1

Ding, J., Shao, F.

(2022) Nat Struct Mol Biol 29: 67-77

Released	2021-12-15
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Homo sapiens Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	ADP-ribosylation factor 1 (protein) Putative cytoplasmic protein (protein)
Unique Ligands	GDP, MG, NAD

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7DRT \| pdb_00007drt	Download File View File

Human Wntless in complex with Wnt3a

Zhong, Q., Zhao, Y., Ye, F., Xiao, Z., Huang, G., Zhang, Y., Lu, P., Xu, W., Zhou, Q., Ma, D.

(2021) Nat Commun 12: 4541-4541

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Homo sapiens
Macromolecule	Protein Wnt-3a (protein) Protein wntless homolog (protein)
Unique Ligands	CLR, LPE, PAM, PCW
Unique branched monosaccharides	NAG

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7E53 \| pdb_00007e53	Download File View File

Crystal structure of sfGFP complexed with the nanobody nb2 at 2.2 Angstron resolution

Ding, Y., Zhong, P.Y.

(2021) Biochem Biophys Res Commun 565: 57-63

Released	2021-10-13
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Aequorea victoria Camelus bactrianus
Macromolecule	Green fluorescent protein (protein) Green fluorescent protein's nanobody nb2 (protein)

1 to 25 of 51 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1OZ1 | pdb_00001oz1

4P2S | pdb_00004p2s

4PPD | pdb_00004ppd

5KWR | pdb_00005kwr

5L2E | pdb_00005l2e

6IEW | pdb_00006iew

6IHJ | pdb_00006ihj

6IR1 | pdb_00006ir1

6IR2 | pdb_00006ir2

6K2U | pdb_00006k2u

6NRQ | pdb_00006nrq

6NRR | pdb_00006nrr

6NRW | pdb_00006nrw

6NRX | pdb_00006nrx

6NS1 | pdb_00006ns1

6ON6 | pdb_00006on6

6ON9 | pdb_00006on9

6ONB | pdb_00006onb

6PLL | pdb_00006pll

6VYD | pdb_00006vyd

6W26 | pdb_00006w26

7DN8 | pdb_00007dn8

7DN9 | pdb_00007dn9

7DRT | pdb_00007drt

7E53 | pdb_00007e53