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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Deng, H."

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Search Summary

This query matches 136 Structures.

Refinements

Structure Determination Methodology

experimental (136)

Scientific Name of Source Organism

	Homo sapiens (55)
	Streptantibioticus cattleyicolor (9)
	Arabidopsis thaliana (7)
	Escherichia coli (6)
	Mus musculus (6)
	Mycobacterium tuberculosis (6)
	synthetic construct (6)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Escherichia coli K-12 (4)
	Klebsiella pneumoniae (4)

More...

Taxonomy

	Eukaryota (74)
	Bacteria (44)
	Riboviria (19)
	other sequences (6)
	Archaea (3)
	Duplodnaviria (2)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (97)
	ELECTRON MICROSCOPY (36)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (126)
	RNA (15)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (27)
	2.0 - 2.5 (28)
	2.5 - 3.0 (30)
	3.0 - 3.5 (23)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (15)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (21)
	2010 - 2014 (32)
	2015 - 2019 (30)
	2020 - 2024 (49)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (44)
	Transferases (35)
	Ligases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (5)
	mpstruc (4)
	MemProtMD (2)
	OPM (2)

Symmetry Type

	Asymmetric (85)
	Cyclic (33)
	Dihedral (18)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	All beta proteins (21)
	Alpha and beta proteins (a/b) (15)
	Multi-domain proteins (alpha and beta) (6)
	Artifacts (8)
	All alpha proteins (4)

AllSelected

1 to 25 of 136 Structures

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1DRO \| pdb_00001dro	Download File View File

NMR STRUCTURE OF THE CYTOSKELETON/SIGNAL TRANSDUCTION PROTEIN

Zhang, P., Talluri, S., Deng, H., Branton, D., Wagner, G.

(1995) Structure 3: 1185-1195

Released	1996-04-03
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	BETA-SPECTRIN (protein)

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1RQP \| pdb_00001rqp	Download File View File

Crystal structure and mechanism of a bacterial fluorinating enzyme

Dong, C., Huang, F., Deng, H., Schaffrath, C., Spencer, J.B., O'Hagan, D., Naismith, J.H.

(2004) Nature 427: 561-565

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-fluoro-5'-deoxyadenosine synthase (protein)
Unique Ligands	SAM

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1RQR \| pdb_00001rqr	Download File View File

Crystal structure and mechanism of a bacterial fluorinating enzyme, product complex

Dong, C., Huang, F., Deng, H., Schaffrath, C., Spencer, J.B., O'Hagan, D., Naismith, J.H.

(2004) Nature 427: 561-565

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-fluoro-5'-deoxyadenosine synthase (protein)
Unique Ligands	5FD, MET

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1ZOM \| pdb_00001zom	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with a peptidomimetic Inhibitor

Lin, J., Deng, H., Jin, L., Pandey, P., Rynkiewicz, M., Bibbins, F., Cantin, S., Quinn, J., Magee, S., Gorga, J.

(2006) J Med Chem 49: 7781-7791

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	339, SO4

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1ZPB \| pdb_00001zpb	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 4-Methyl-pentanoic acid {1-[4-guanidino-1-(thiazole-2-carbonyl)-butylcarbamoyl]-2-methyl-propyl}-amide

Deng, H., Bannister, T.D., Jin, L., Nagafuji, P., Celatka, C.A., Lin, J., Lazarova, T.I., Rynkiewicz, M.J., Quinn, J., Bibbins, F., Pandey, P., Gorga, J., Babine, R.E., Meyers, H.V., Abdel-Meguid, S.S., Strickler, J.E.

(2006) Bioorg Med Chem Lett 16: 3049-3054

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	995, SO4

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1ZPC \| pdb_00001zpc	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-[2-(3-Chloro-phenyl)-2-hydroxy-acetylamino]-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-3-methyl-butyramide

(2006) Bioorg Med Chem Lett 16: 3049-3054

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	716, SO4

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1ZPZ \| pdb_00001zpz	Download File View File

Factor XI catalytic domain complexed with N-((R)-1-(4-bromophenyl)ethyl)urea-Asn-Val-Arg-alpha-ketothiazole

Lin, J., Deng, H., Jin, L., Prandey, P., Rynkiewicz, M.J., Bibbins, F., Cantin, S., Quinn, J., Magee, S., Gorga, J.

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	BUK, SO4

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2C2W \| pdb_00002c2w	Download File View File

The fluorinase from Streptomyces cattleya is also a chlorinase. Structure of 5'-chloro-5'-deoxyadenosine crystallised in the fluorinase.

McEwan, A.R., Naismith, J.H., O'Hagan, D.

(2006) Angew Chem Int Ed Engl 45: 759-762

Released	2005-12-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	5CD, CL

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2C4T \| pdb_00002c4t	Download File View File

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from Streptomyces cattleya complexed with an inhibitor, an analogue of S- adenosyl methionine

McEwan, A.R., Deng, H., McGlinchey, R.P., Robinson, D.R., O'Hagan, D., Naismith, J.H.

To be published

Released	2007-03-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	CL, SA8

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2C4U \| pdb_00002c4u	Download File View File

Crystal structure of the apo form of the 5'-Fluoro-5'-deoxyadenosine synthase enzyme from Streptomyces cattleya

McEwan, A.R., Deng, H., Robinson, D.A., DeLaurentis, W., McGlinchey, R.P., O'Hagan, D., Naismith, J.H.

(2006) Org Biomol Chem 4: 1458-1460

Released	2006-04-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	GOL

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2C5B \| pdb_00002c5b	Download File View File

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from Streptomyces cattleya complexed with 2'deoxy-5'deoxy-fluoroadenosine.

McEwan, A.R., Deng, H., McGlinchey, R.P., Robinson, D.A., O'Hagan, D., Naismith, J.H., Spencer, J.

(2006) Org Biomol Chem 4: 1458

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	5F1, MET

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2C5H \| pdb_00002c5h	Download File View File

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from Streptomyces cattleya complexed with 2'deoxy-adenosine

McEwan, A.R., Deng, H., McGlinchey, R.P., Robinson, D.R., O'Hagan, D., Naismith, J.H., Spencer, J.

To be published

Released	2006-10-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	3D1, CL, MET

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2CBX \| pdb_00002cbx	Download File View File

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from Streptomyces cattleya complexed with beta-D-erythrofuranosyl- adenosine

McEwan, A.R., Cadicamo, C.D., Deng, H., McGlinchey, R.P., Robinson, D.R., O'Hagan, D., Naismith, J.H., Spencer, J.

(2006) Org Biomol Chem 4: 1458-1460

Released	2007-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	CC5, GOL

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2CC2 \| pdb_00002cc2	Download File View File

X-ray crystal structure of 5'-fluorodeoxyadenosine synthase from Streptomyces cattleya complexed with 5'deoxyadenosine

Mcewan, A.R., Deng, H., McGlinchey, R.P., Robinson, D.R., O'Hagan, D., Spencer, J., Naismith, J.H.

(2006) Org Biomol Chem 4: 1458-1460

Released	2007-03-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptantibioticus cattleyicolor
Macromolecule	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE (protein)
Unique Ligands	5AD, CL

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2FDA \| pdb_00002fda	Download File View File

Crystal Structure of the Catalytic Domain of Human Coagulation Factor XIa in Complex with alpha-Ketothiazole Arginine Derived Ligand

Jin, L., Pandey, P., Babine, R.E., Weaver, D.T., Abdel-Meguid, S.S., Strickler, J.E.

(2006) Bioorg Med Chem Lett 16: 3049-3054

Released	2006-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	682, BCT, SO4

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2I4T \| pdb_00002i4t	Download File View File

Crystal structure of Purine Nucleoside Phosphorylase from Trichomonas vaginalis with Imm-A

Rinaldo-Matthis, A., Schramm, V.L., Almo, S.C.

(2007) Biochemistry 46: 659-668

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Trichomonas vaginalis
Macromolecule	Trichomonas vaginalis purine nucleoside phosphorylase (protein)
Unique Ligands	PO4, UA2

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2ISC \| pdb_00002isc	Download File View File

Crystal structure of Purine Nucleoside Phosphorylase from Trichomonas vaginalis with DADMe-Imm-A

Rinaldo-Matthis, A., Almo, S.C., Schramm, V.L.

(2007) Biochemistry 46: 659-668

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Trichomonas vaginalis
Macromolecule	purine nucleoside phosphorylase (protein)
Unique Ligands	223, PO4

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2LWF \| pdb_00002lwf	Download File View File

Structure of N-terminal domain of a plant Grx

Feng, Y.

(2013) Proc Natl Acad Sci U S A 110: 9565-9570

Released	2013-05-22
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Monothiol glutaredoxin-S16, chloroplastic (protein)

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2N5C \| pdb_00002n5c	Download File View File

Solution NMR structure of the lasso peptide chaxapeptin

Elsayed, S.S., Trusch, F., Deng, H., Raab, A., Prokes, I., Busarakam, K., Asenjo, J.A., Andrews, B.A., van West, P., Bull, A.T., Goodfellow, M., Yi, Y., Ebel, R., Jaspars, M., Rateb, M.E.

(2015) J Org Chem 80: 10252-10260

Released	2015-10-07
Method	SOLUTION NMR
Organisms	Streptomyces leeuwenhoekii
Macromolecule	chaxapeptin (protein)

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2OA5 \| pdb_00002oa5	Download File View File

Crystal structure of ORF52 from Murid herpesvirus (MUHV-4) (Murine gammaherpesvirus 68) at 2.1 A resolution. Northeast Structural Genomics Consortium target MHR28B.

Benach, J., Chen, Y., Seetharaman, J., Janjua, H., Xiao, R., Cunningham, K., Ma, L.-C., Ho, C.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) J Biological Chem 282: 31534-31541

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Murid gammaherpesvirus 4
Macromolecule	Hypothetical protein BQLF2 (protein)
Unique Ligands	PE5

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2OYP \| pdb_00002oyp	Download File View File

T Cell Immunoglobulin Mucin-3 Crystal Structure Revealed a Galectin-9-independent Binding Surface

Cao, E., Ramagopal, U.A., Fedorov, A.A., Fedorov, E.V., Nathenson, S.G., Almo, S.C.

(2007) Immunity 26: 311-321

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.952 Å
Organisms	Mus musculus
Macromolecule	Hepatitis A virus cellular receptor 2 (protein)
Unique Ligands	SO4

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2WR8 \| pdb_00002wr8	Download File View File

Structure of Pyrococcus horikoshii SAM hydroxide adenosyltransferase in complex with SAH

McMahon, S.A., Deng, H., O'Hagan, D., Johnson, K.A., Naismith, J.H.

(2009) Chembiochem 10: 2455

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	PUTATIVE UNCHARACTERIZED PROTEIN PH0463 (protein)
Unique Ligands	SAH

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3H6F \| pdb_00003h6f	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Proteasome Modified by inhibitor HT1171

Li, D., Li, H., Lin, G.

(2009) Nature 461: 621-626

Released	2009-09-15
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome (Alpha subunit) PrcA (protein) Proteasome (Beta subunit) PrcB (protein)
Unique Ligands	DMF

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3H6I \| pdb_00003h6i	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Proteasome Modified by inhibitor GL1

Li, D., Li, H., Lin, G.

(2009) Nature 461: 621-626

Released	2009-09-15
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome (Alpha subunit) PrcA (protein) Proteasome (Beta subunit) PrcB (protein)
Unique Ligands	DMF

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3HF9 \| pdb_00003hf9	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Proteasome open-gate mutant modified by inhibitor GL1

Li, D., Li, H.

(2009) Nature 461: 621-626

Released	2009-09-15
Method	X-RAY DIFFRACTION 2.878 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Proteasome (Alpha subunit) PrcA (protein) Proteasome (Beta subunit) PrcB (protein)

1 to 25 of 136 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DRO | pdb_00001dro

1RQP | pdb_00001rqp

1RQR | pdb_00001rqr

1ZOM | pdb_00001zom

1ZPB | pdb_00001zpb

1ZPC | pdb_00001zpc

1ZPZ | pdb_00001zpz

2C2W | pdb_00002c2w

2C4T | pdb_00002c4t

2C4U | pdb_00002c4u

2C5B | pdb_00002c5b

2C5H | pdb_00002c5h

2CBX | pdb_00002cbx

2CC2 | pdb_00002cc2

2FDA | pdb_00002fda

2I4T | pdb_00002i4t

2ISC | pdb_00002isc

2LWF | pdb_00002lwf

2N5C | pdb_00002n5c

2OA5 | pdb_00002oa5

2OYP | pdb_00002oyp

2WR8 | pdb_00002wr8

3H6F | pdb_00003h6f

3H6I | pdb_00003h6i

3HF9 | pdb_00003hf9