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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Egli, M."

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Search Summary

This query matches 343 Structures.

Refinements

Structure Determination Methodology

experimental (343)

Scientific Name of Source Organism

	synthetic construct (102)
	Homo sapiens (78)
	Saccharolobus solfataricus P2 (47)
	Synechococcus elongatus PCC 7942 = FACHB-805 (15)
	Bos taurus (10)
	Halalkalibacterium halodurans (10)
	Saccharolobus solfataricus (9)
	Escherichia coli (6)
	Halalkalibacterium halodurans C-125 (5)
	Danio rerio (4)

More...

Taxonomy

	other sequences (102)
	Eukaryota (95)
	Archaea (57)
	Bacteria (42)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (340)
	SOLUTION NMR (3)
	NEUTRON DIFFRACTION (2)

Polymer Entity Type

	DNA (237)
	Protein (192)
	RNA (48)
	NA-hybrid (12)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (61)
	1.5 - 2.0 (117)
	2.0 - 2.5 (67)
	2.5 - 3.0 (68)
	3.0 - 3.5 (22)
	3.5 - 4.0 (4)

Release Date

	1990 - 1994 (10)
	1995 - 1999 (30)
	2000 - 2004 (42)
	2005 - 2009 (77)
	2010 - 2014 (77)
	2015 - 2019 (67)
	2020 - 2024 (40)

Enzyme Classification Name

	Transferases (146)
	Hydrolases (41)
	Lyases (11)
	Oxidoreductases (3)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (163)
	Cyclic (29)
	Dihedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (55)
	Alpha and beta proteins (a/b) (22)
	Multi-domain proteins (alpha and beta) (45)
	Artifacts (14)
	All alpha proteins (3)

AllSelected

1 to 25 of 343 Structures

Page 1 of 14

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131D \| pdb_0000131d	Download File View File

THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE

Bancroft, D., Williams, L.D., Rich, A., Egli, M.

(1994) Biochemistry 33: 1073-1086

Released	1993-10-15
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	DNA (5'-D(CPGPCPGPCPG)-3') (nucleic acid)
Unique Ligands	NA, SPM

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168D \| pdb_0000168d	Download File View File

STABILIZING EFFECTS OF THE RNA 2'-SUBSTITUENT: CRYSTAL STRUCTURE OF AN OLIGODEOXYNUCLEOTIDE DUPLEX CONTAINING 2'-O-METHYLATED ADENOSINES

Lubini, P., Zuercher, W., Egli, M.

(1994) Chem Biol 1: 39-45

Released	1994-08-31
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA/RNA (5'-D(GPCPGPTP)-R((A2M)P)-D(TPAPCPGPC)-3') (hybrid)

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1CS7 \| pdb_00001cs7	Download File View File

SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER

Lewis, F.D., Liu, X., Wu, Y., Miller, S.E., Wasielewski, M.R., Letsinger, R.L., Sanishvili, R., Joachimiak, A., Tereshko, V., Egli, M.

(1999) J Am Chem Soc 121: 9905-9906

Released	2001-10-19
Method	X-RAY DIFFRACTION 3.2 Å
Macromolecule	5'-D(GP(BRU)PTPTPTPGP(S02)CPAPAPAPAPC)-3' (nucleic acid)
Unique Ligands	SR

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1D14 \| pdb_00001d14	Download File View File

STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE

Williams, L.D., Egli, M., Ughetto, G., Van Der Marel, G.A., Van Boom, J.H., Quigley, G.J., Wang, A.H.-J., Rich, A., Frederick, C.A.

(1990) J Mol Biology 215: 313-320

Released	1990-10-15
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	DNA (5'-D(CPGPTP(AS)PCPG)-3') (nucleic acid)
Unique Ligands	DM3

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1D17 \| pdb_00001d17	Download File View File

DNA-NOGALAMYCIN INTERACTIONS

Egli, M., Williams, L.D., Frederick, C.A., Rich, A.

(1991) Biochemistry 30: 1364-1372

Released	1991-07-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D((5CM)PGPTPAP(5CM)PG)-3') (nucleic acid)
Unique Ligands	NGM

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1D32 \| pdb_00001d32	Download File View File

DRUG-INDUCED DNA REPAIR: X-RAY STRUCTURE OF A DNA-DITERCALINIUM COMPLEX

Gao, Q., Williams, L.D., Egli, M., Rabinovich, D., Chen, S.-L., Quigley, G.J., Rich, A.

(1991) Proc Natl Acad Sci U S A 88: 2422-2426

Released	1992-04-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D(CPGPCPG)-3') (nucleic acid)
Unique Ligands	DIT

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1D48 \| pdb_00001d48	Download File View File

STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION

Egli, M., Williams, L.D., Gao, Q., Rich, A.

(1991) Biochemistry 30: 11388-11402

Released	1992-04-15
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	DNA (5'-D(CPGPCPGPCPG)-3') (nucleic acid)
Unique Ligands	SPM

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1D87 \| pdb_00001d87	Download File View File

CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES

Egli, M., Usman, N., Rich, A.

(1993) Biochemistry 32: 3221-3237

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	DNA/RNA (5'-R(GP)-D(CPGPTPAPTPAPCPGP*C)-3') (hybrid)

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1D88 \| pdb_00001d88	Download File View File

CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES

Egli, M., Usman, N., Rich, A.

(1993) Biochemistry 32: 3221-3237

Released	1993-07-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA/RNA (5'-D(GPCPGPTP)-R(AP)-D(TPAPCPGPC)-3') (hybrid)

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1D8Y \| pdb_00001d8y	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I (protein) D(T)19 OLIGOMER (nucleic acid)
Unique Ligands	SO4, ZN

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1D9D \| pdb_00001d9d	Download File View File

CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3'

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I (protein) 5'-D(TPCPGP)-R(AP(U31)P*(C31))-3' (hybrid)
Unique Ligands	MG, SO4, ZN

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1D9F \| pdb_00001d9f	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I (protein) DNA/RNA (5'-D(TPTP)-R((U31)P)-D(T)-3') (hybrid)
Unique Ligands	SO4, ZN

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1D9H \| pdb_00001d9h	Download File View File

Structural origins of the exonuclease resistance of a zwitterionic RNA

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA/RNA (5'-D(GPCPGPTPAP)-R((U31)P)-D(APCPGPC)-3') (hybrid)

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1DAU \| pdb_00001dau	Download File View File

Analog of dickerson-drew DNA dodecamer with 6'-alpha-methyl carbocyclic thymidines, NMR, minimized average structure

Denisov, A., Bekiroglu, S., Maltseva, T., Sandstrom, A., Altmann, K.-H., Egli, M., Chattopadhyaya, J.

(1998) J Biomol Struct Dyn 16: 547-568

Released	1998-05-27
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPCPGPAPAP(T32)P(T32)PCPGPCPG)-3') (nucleic acid)

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1DPL \| pdb_00001dpl	Download File View File

A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE

Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.

(1998) Biopolymers 48: 234-252

Released	2000-04-04
Method	X-RAY DIFFRACTION 0.83 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	MG, SPM

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1DPN \| pdb_00001dpn	Download File View File

B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE

Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.

(1998) Biopolymers 48: 234-252

Released	2000-04-04
Method	X-RAY DIFFRACTION 0.95 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAP(TAF)PTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	MG

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1EH4 \| pdb_00001eh4	Download File View File

BINARY COMPLEX OF CASEIN KINASE-1 FROM S. POMBE WITH AN ATP COMPETITIVE INHIBITOR, IC261

Mashhoon, N., Demaggio, A.J., Tereshko, V., Bergmeier, S.C., Egli, M., Hoekstra, M.F., Kuret, J.

(2000) J Biological Chem 275: 20052-20060

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	CASEIN KINASE-1 (protein)
Unique Ligands	IC1, SO4

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1EI4 \| pdb_00001ei4	Download File View File

B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE

Minasov, G., Teplova, M., Nielsen, P., Wengel, J., Egli, M.

(2000) Biochemistry 39: 3525-3532

Released	2000-03-27
Method	X-RAY DIFFRACTION 1.43 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAP(TLC)P(TLC)PCPGPCPG)-3') (nucleic acid)
Unique Ligands	MG, SPM

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1EX2 \| pdb_00001ex2	Download File View File

CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAF PROTEIN

Minasov, G., Teplova, M., Stewart, G.C., Koonin, E.V., Anderson, W.F., Egli, M., Midwest Center for Structural Genomics (MCSG)

(2000) Proc Natl Acad Sci U S A 97: 6328-6333

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN MAF (protein)
Unique Ligands	PO4
Unique branched monosaccharides	FRU, GLC